Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 1.9e-44 182.2 95 100.0
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.2e-29 132.1 98 75.5
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 8.0e-27 123.6 97 63.9
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 1.7e-24 115.9 96 67.7
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.1e-23 113.2 99 63.6
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 3.1e-23 111.7 98 60.2
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.6e-22 109.4 98 64.3
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.9e-21 105.1 100 59.0
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 6.5e-21 104.0 96 60.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 8.5e-21 103.6 96 61.5
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 3.2e-20 101.7 99 53.5
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 7.2e-20 100.5 94 55.3
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 6.1e-19 97.4 94 54.3
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 8.0e-19 97.1 98 54.1
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.3e-18 95.5 99 52.5
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 3.0e-18 95.1 101 52.5
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 4.0e-18 94.7 102 52.0
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 6.8e-18 94.0 95 52.6
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 6.8e-18 94.0 93 53.8
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 8.8e-18 93.6 104 51.0
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 8.8e-18 93.6 104 51.0
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.5e-17 92.8 97 56.7
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.5e-17 92.8 97 56.7
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.5e-17 92.8 104 50.0
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 2.6e-17 92.0 102 50.0
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 3.4e-17 91.7 96 58.3
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 4.4e-17 91.3 95 53.7
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.4e-17 91.3 101 50.5
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 4.4e-17 91.3 95 53.7
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 5.7e-17 90.9 99 52.5
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 5.7e-17 90.9 99 52.5
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 9.8e-17 90.1 102 52.9
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 9.8e-17 90.1 94 54.3
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.3e-16 89.7 100 53.0
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.7e-16 89.4 95 53.7
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.7e-16 89.4 102 48.0
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.7e-16 89.4 95 54.7
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.7e-16 89.4 101 47.5
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 3.7e-16 88.2 99 50.5
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 3.7e-16 88.2 99 49.5
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 4.8e-16 87.8 99 49.5
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 6.3e-16 87.4 100 49.0
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 1.1e-15 86.7 93 49.5
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.4e-15 86.3 94 48.9
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.8e-15 85.9 99 49.5
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 1.8e-15 85.9 95 49.5
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.4e-15 85.5 100 50.0
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.4e-15 85.5 100 50.0
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.4e-15 85.5 94 47.9
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 3.1e-15 85.1 103 48.5
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.1e-15 85.1 94 47.9
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.1e-15 85.1 101 43.6
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 5.4e-15 84.3 91 51.6
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 5.4e-15 84.3 103 48.5
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 7.0e-15 84.0 98 52.0
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.0e-15 84.0 105 47.6
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 7.0e-15 84.0 90 51.1
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 9.1e-15 83.6 104 43.3
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.2e-14 83.2 110 43.6
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 1.2e-14 83.2 98 50.0
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 2.7e-14 82.0 114 44.7
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 4.5e-14 81.3 93 48.4
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 4.5e-14 81.3 101 48.5
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 5.9e-14 80.9 99 48.5
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 5.9e-14 80.9 93 48.4
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 7.7e-14 80.5 96 49.0
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.0e-13 80.1 92 56.5
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 1.0e-13 80.1 108 44.4
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 1.3e-13 79.7 104 43.3
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.3e-13 79.7 100 49.0
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.3e-13 79.7 100 49.0
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 1.3e-13 79.7 89 52.8
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 1.3e-13 79.7 100 49.0
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.7e-13 79.3 84 48.8
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.7e-13 79.3 100 45.0
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.7e-13 79.3 99 47.5
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.9e-13 78.6 99 44.4
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.9e-13 78.6 101 48.5
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.9e-13 78.6 90 45.6
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 3.8e-13 78.2 101 46.5
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 5.0e-13 77.8 105 45.7
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 6.5e-13 77.4 99 47.5
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.6e-13 77.0 95 45.3
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-12 76.6 101 47.5
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.1e-12 76.6 101 47.5
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.1e-12 76.6 101 47.5
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.5e-12 76.3 95 44.2
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-12 76.3 97 47.4
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 3.2e-12 75.1 101 41.6
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 7.2e-12 73.9 91 49.5
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 7.2e-12 73.9 114 37.7
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 7.2e-12 73.9 88 48.9
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 1.6e-11 72.8 78 50.0
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.6e-11 72.8 100 44.0
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.6e-11 71.6 85 43.5
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 4.7e-11 71.2 117 37.6
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.0e-11 70.5 103 39.8
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 8.0e-11 70.5 103 39.8
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 1.4e-10 69.7 100 41.0
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.8e-10 69.3 108 40.7
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.8e-10 69.3 96 46.9
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 1.8e-10 69.3 95 43.2
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 3.0e-10 68.6 104 39.4
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 4.0e-10 68.2 93 44.1
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 4.0e-10 68.2 93 40.9
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 6.8e-10 67.4 99 41.4
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 6.8e-10 67.4 93 40.9
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 6.8e-10 67.4 98 40.8
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 6.8e-10 67.4 93 40.9
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 6.8e-10 67.4 98 40.8
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 8.8e-10 67.0 93 45.2
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 8.8e-10 67.0 104 39.4
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.2e-09 66.6 88 40.9
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.5e-09 66.2 91 42.9
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.5e-09 66.2 97 42.3
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 2.0e-09 65.9 98 39.8
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 2.0e-09 65.9 96 40.6
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.6e-09 65.5 98 39.8
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 4.4e-09 64.7 98 38.8
MBI16_g31702_MAGBIO Magnolia biondii HOM05D005150 ORTHO05D006070 4.4e-09 64.7 97 40.2
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 4.4e-09 64.7 93 39.8
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 7.5e-09 63.9 93 38.7
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 7.5e-09 63.9 96 38.5
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.7e-08 62.8 103 39.8
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.2e-08 62.4 93 37.6
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.2e-08 62.4 93 37.6
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.2e-08 62.4 88 40.9
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 2.2e-08 62.4 95 42.1
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 2.8e-08 62.0 106 41.5
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 3.7e-08 61.6 93 40.9
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 6.3e-08 60.8 88 42.0
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 8.3e-08 60.5 93 40.9
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 2.4e-07 58.9 91 39.6
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 2.4e-07 58.9 82 39.0
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 2.4e-07 58.9 78 44.9
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 1.2e-06 56.6 91 39.6
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.2e-06 56.6 93 37.6
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.2e-06 56.6 95 41.1
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 2.7e-06 55.5 94 39.4
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 3.5e-06 55.1 100 36.0
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.5e-06 55.1 99 35.4


User provided reference genes

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