Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 4.2e-292 1007.3 510 100.0
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 2.4e-226 788.9 511 80.4
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 2.1e-211 739.2 519 75.1
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 1.5e-193 679.9 514 71.2
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 4.5e-193 678.3 511 71.0
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 7.4e-188 661.0 516 70.5
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 1.3e-187 660.2 516 70.5
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 2.8e-187 659.1 514 70.2
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 8.2e-187 657.5 511 69.9
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 9.1e-186 654.1 513 69.2
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.2e-185 653.7 517 68.9
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 3.5e-185 652.1 511 67.7
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 4.5e-185 651.7 516 69.8
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 7.7e-185 651.0 512 69.1
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.0e-184 650.6 509 68.8
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.7e-184 649.8 518 68.7
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.2e-183 645.6 521 68.9
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 7.2e-183 644.4 513 69.4
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.2e-182 643.7 517 68.5
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 1.6e-182 643.3 512 68.9
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 1.6e-182 643.3 517 68.9
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 2.1e-182 642.9 514 68.1
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.6e-182 642.1 517 68.9
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 4.7e-182 641.7 516 69.4
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 6.1e-182 641.3 519 68.4
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 8.0e-182 641.0 537 67.0
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 2.3e-181 639.4 516 68.6
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 4.0e-181 638.6 516 69.2
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.2e-180 637.1 522 68.2
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 5.7e-180 634.8 516 67.2
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.8e-179 632.5 521 66.8
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 3.7e-179 632.1 511 68.9
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 3.7e-179 632.1 513 68.4
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 8.2e-179 630.9 519 68.2
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 3.1e-178 629.0 510 67.3
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 3.1e-178 629.0 514 66.1
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 3.5e-177 625.5 518 66.2
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 3.8e-176 622.1 530 65.3
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 6.5e-176 621.3 513 66.7
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 6.5e-176 621.3 513 66.1
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 8.5e-176 620.9 518 65.3
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 7.2e-175 617.8 510 66.9
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 9.4e-175 617.5 513 66.1
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 9.4e-175 617.5 525 63.8
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.2e-174 617.1 515 66.8
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 4.7e-174 615.1 514 65.6
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.0e-173 614.0 520 63.1
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 5.2e-173 611.7 513 65.1
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 3.7e-171 605.5 515 64.9
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 4.8e-171 605.1 510 66.1
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 4.8e-171 605.1 468 68.6
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.4e-170 603.6 525 64.4
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 5.4e-170 601.7 524 64.3
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 3.5e-169 599.0 515 64.5
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 5.9e-169 598.2 517 64.6
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 7.7e-169 597.8 523 64.1
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 1.0e-168 597.4 516 64.1
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 1.3e-168 597.0 512 65.6
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.3e-168 597.0 524 64.5
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 2.3e-168 596.3 517 63.8
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 6.5e-168 594.7 520 64.2
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 8.6e-168 594.3 512 65.8
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 8.6e-168 594.3 515 64.5
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 1.1e-167 594.0 516 64.1
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.5e-167 593.6 515 65.0
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 2.5e-167 592.8 518 63.1
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 3.2e-167 592.4 519 64.0
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 4.2e-167 592.0 518 64.1
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.5e-167 591.7 508 64.2
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 7.2e-167 591.3 509 64.4
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 9.5e-167 590.9 511 65.4
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 9.5e-167 590.9 517 63.1
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.2e-166 590.5 508 65.0
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 2.8e-166 589.3 508 64.0
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 3.6e-166 589.0 515 64.3
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.1e-166 588.2 508 64.0
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.0e-165 587.4 520 64.8
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 2.3e-165 586.3 518 63.1
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 4.0e-165 585.5 509 64.8
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 1.2e-164 583.9 515 63.7
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 1.5e-164 583.6 515 64.5
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.5e-164 583.6 513 63.5
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 3.4e-164 582.4 519 63.0
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 7.5e-164 581.3 517 63.2
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 1.3e-163 580.5 513 64.1
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 4.9e-163 578.6 518 63.5
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 2.4e-162 576.2 514 63.6
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 7.0e-162 574.7 507 63.9
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 6.6e-160 568.2 514 64.4
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 5.6e-159 565.1 509 63.7
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 4.7e-158 562.0 509 63.7
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.2e-157 558.5 505 63.0
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.4e-156 555.4 531 60.8
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 5.7e-156 555.1 516 61.2
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 8.3e-155 551.2 507 62.5
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.1e-154 550.8 472 65.0
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 2.7e-153 546.2 507 62.1
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 7.8e-153 544.7 509 61.7
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 1.7e-152 543.5 531 59.9
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 6.6e-152 541.6 506 63.2
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.5e-151 540.4 506 63.0
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 2.5e-151 539.7 525 59.4
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 3.2e-146 522.7 456 63.8
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 1.3e-139 500.7 514 57.8
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 7.1e-138 495.0 522 55.7
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.6e-134 483.8 518 55.6
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 8.9e-133 478.0 519 55.1
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 2.0e-132 476.9 519 54.9
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 1.6e-129 467.2 482 58.1
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 3.9e-128 462.6 532 53.0
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 5.1e-120 435.6 543 51.9
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 6.6e-120 435.3 533 50.8
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 9.6e-119 431.4 513 53.0
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 6.2e-110 402.1 307 67.1
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.5e-108 397.5 509 48.1
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 5.1e-104 382.5 512 50.0
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 2.5e-90 337.0 510 46.3
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 4.1e-85 319.7 584 40.6
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 6.7e-80 302.4 289 58.5
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 7.7e-76 288.9 280 59.3
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 3.8e-51 206.8 334 41.9
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 4.7e-49 199.9 198 59.1
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 3.6e-33 147.1 273 37.4
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.4e-24 118.6 499 26.9
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 4.1e-21 107.1 103 66.0
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 2.3e-19 101.3 529 25.5
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.6e-17 95.1 108 56.5
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.3e-14 85.5 72 59.7
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-14 85.5 81 54.3
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 8.7e-11 72.8 54 59.3
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 3.3e-10 70.9 170 33.5
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.4e-08 64.7 63 52.4


User provided reference genes

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