Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0126441 Helianthus annuus HOM05D004177 ORTHO05D004826 9.3e-59 229.9 112 100.0
HanXRQChr09g0263461 Helianthus annuus HOM05D004177 ORTHO05D004826 7.9e-50 200.3 100 98.0
Phvul.004G172700 Phaseolus vulgaris HOM05D004177 ORTHO05D004826 1.5e-48 196.1 100 94.0
VMungo0464G2175 Vigna mungo HOM05D004177 ORTHO05D004826 1.5e-48 196.1 100 94.0
ECA233G2252 Erigeron canadensis HOM05D004177 ORTHO05D004826 1.9e-48 195.7 100 94.0
arahy.Tifrunner.gnm1.ann1.H1EJ8W Arachis hypogaea HOM05D004177 ORTHO05D004826 2.5e-48 195.3 100 94.0
arahy.Tifrunner.gnm1.ann1.TIR1N2 Arachis hypogaea HOM05D004177 ORTHO05D004826 2.5e-48 195.3 100 94.0
Lj1g0019759 Lotus japonicus HOM05D004177 ORTHO05D004826 2.5e-48 195.3 100 94.0
Psat7g081120 Pisum sativum HOM05D004177 ORTHO05D004826 2.5e-48 195.3 100 94.0
Rhsim03G0234600 Rhododendron simsii HOM05D004177 ORTHO05D004826 2.5e-48 195.3 100 93.0
Aqoxy2G03855 Aquilegia oxysepala HOM05D004177 ORTHO05D004826 3.3e-48 194.9 100 93.0
Prupe.7G214500 Prunus persica HOM05D004177 ORTHO05D004826 3.3e-48 194.9 100 93.0
Hma1.2p1_0663F.1_g198701 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 4.3e-48 194.5 100 92.0
TPR.G38463 Trifolium pratense HOM05D004177 ORTHO05D004826 4.3e-48 194.5 100 93.0
Actinidia29891 Actinidia chinensis HOM05D004177 ORTHO05D004826 5.7e-48 194.1 100 93.0
Lsat_1_v5_gn_8_88081 Lactuca sativa HOM05D004177 ORTHO05D004826 5.7e-48 194.1 100 93.0
Ah.09g228420 Amaranthus hybridus HOM05D004177 ORTHO05D004826 7.4e-48 193.7 100 91.0
QL02p063435 Quercus lobata HOM05D004177 ORTHO05D004826 7.4e-48 193.7 100 93.0
GSVIVG01008468001 Vitis vinifera HOM05D004177 ORTHO05D004826 7.4e-48 193.7 100 92.0
CiPaw.03G219400 Carya illinoinensis HOM05D004177 ORTHO05D004826 9.7e-48 193.4 100 93.0
HanXRQChr04g0112631 Helianthus annuus HOM05D004177 ORTHO05D004826 9.7e-48 193.4 101 95.0
Lalb_Chr24g0393931 Lupinus albus HOM05D004177 ORTHO05D004826 9.7e-48 193.4 110 88.2
MELO3C005126.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.3e-47 193.0 100 90.0
Dinv42291 Davidia involucrata HOM05D004177 ORTHO05D004826 1.3e-47 193.0 100 92.0
TAR636G0014 Trochodendron aralioides HOM05D004177 ORTHO05D004826 1.3e-47 193.0 100 92.0
vmacro00113 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 1.3e-47 193.0 100 92.0
CANSAT11G0575 Cannabis sativa HOM05D004177 ORTHO05D004826 2.2e-47 192.2 100 90.0
Gohir.D10G201600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.2e-47 192.2 100 90.0
Hma1.2p1_1074F.1_g254310 Hydrangea macrophylla HOM05D004177 ORTHO05D004826 2.2e-47 192.2 100 90.0
Cfa003130 Carpinus fangiana HOM05D004177 ORTHO05D004826 2.8e-47 191.8 100 91.0
AUR62007842 Chenopodium quinoa HOM05D004177 ORTHO05D004826 2.8e-47 191.8 100 92.0
DCAR_012005 Daucus carota HOM05D004177 ORTHO05D004826 2.8e-47 191.8 100 92.0
Glyma.07G127600 Glycine max HOM05D004177 ORTHO05D004826 2.8e-47 191.8 100 92.0
Nn6g35409 Nelumbo nucifera HOM05D004177 ORTHO05D004826 2.8e-47 191.8 100 91.0
SalBow6G4427 Salvia bowleyana HOM05D004177 ORTHO05D004826 2.8e-47 191.8 100 93.0
EL10Ac6g14643 Beta vulgaris HOM05D004177 ORTHO05D004826 3.7e-47 191.4 100 90.0
AUR62003036 Chenopodium quinoa HOM05D004177 ORTHO05D004826 3.7e-47 191.4 100 92.0
ClCG01G007700 Citrullus lanatus HOM05D004177 ORTHO05D004826 3.7e-47 191.4 100 90.0
CsaV3_5G024780 Cucumis sativus L. HOM05D004177 ORTHO05D004826 3.7e-47 191.4 100 89.0
ECA236G1557 Erigeron canadensis HOM05D004177 ORTHO05D004826 3.7e-47 191.4 100 91.0
Manes.15G104600 Manihot esculenta HOM05D004177 ORTHO05D004826 3.7e-47 191.4 100 91.0
AUR62027470 Chenopodium quinoa HOM05D004177 ORTHO05D004826 4.8e-47 191.0 100 90.0
Dinv36734 Davidia involucrata HOM05D004177 ORTHO05D004826 4.8e-47 191.0 100 91.0
SGA_v2.0_scaffold62G21577 Striga asiatica HOM05D004177 ORTHO05D004826 4.8e-47 191.0 100 91.0
THA.LOC104816571 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 4.8e-47 191.0 100 91.0
Actinidia25277 Actinidia chinensis HOM05D004177 ORTHO05D004826 6.3e-47 190.7 100 90.0
Ca_18171_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 6.3e-47 190.7 100 91.0
TWI09G1015 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 6.3e-47 190.7 100 89.0
CiPaw.12G022300 Carya illinoinensis HOM05D004177 ORTHO05D004826 8.2e-47 190.3 100 91.0
Ciclev10008698m.g Citrus clementina HOM05D004177 ORTHO05D004826 8.2e-47 190.3 100 90.0
Gohir.A10G194500 Gossypium hirsutum HOM05D004177 ORTHO05D004826 8.2e-47 190.3 100 89.0
Gorai.011G226300 Gossypium raimondii HOM05D004177 ORTHO05D004826 8.2e-47 190.3 100 89.0
Atru.chr7.1532 Acer truncatum HOM05D004177 ORTHO05D004826 1.1e-46 189.9 100 89.0
Potri.003G186900 Populus trichocarpa HOM05D004177 ORTHO05D004826 1.1e-46 189.9 100 91.0
PGR142G0935 Punica granatum HOM05D004177 ORTHO05D004826 1.1e-46 189.9 100 90.0
Sabra03G0136900 Salix brachista HOM05D004177 ORTHO05D004826 1.4e-46 189.5 100 90.0
Sed0022999 Sechium edule HOM05D004177 ORTHO05D004826 1.4e-46 189.5 100 89.0
Migut.J00439 Erythranthe guttata HOM05D004177 ORTHO05D004826 1.8e-46 189.1 100 90.0
PSO210G0074 Papaver somniferum HOM05D004177 ORTHO05D004826 1.8e-46 189.1 100 89.0
PSO210G7296 Papaver somniferum HOM05D004177 ORTHO05D004826 1.8e-46 189.1 100 89.0
THA.LOC104826863 Tarenaya hassleriana HOM05D004177 ORTHO05D004826 1.8e-46 189.1 100 90.0
MD15G1202800 Malus domestica HOM05D004177 ORTHO05D004826 2.4e-46 188.7 100 89.0
Duzib114G0142 Durio zibethinus HOM05D004177 ORTHO05D004826 3.1e-46 188.3 100 89.0
AT5G05920 Arabidopsis thaliana HOM05D004177 ORTHO05D004826 4.1e-46 188.0 99 89.9
BolC2t06219H Brassica oleracea HOM05D004177 ORTHO05D004826 4.1e-46 188.0 100 91.0
COL.COLO4_19342 Corchorus olitorius HOM05D004177 ORTHO05D004826 4.1e-46 188.0 100 88.0
FAN26G2529 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.1e-46 188.0 100 91.0
BraA02t04865Z Brassica rapa HOM05D004177 ORTHO05D004826 5.3e-46 187.6 100 90.0
Cpa.g.sc19.251 Carica papaya HOM05D004177 ORTHO05D004826 5.3e-46 187.6 100 90.0
FAN19G3030 Fragaria x ananassa HOM05D004177 ORTHO05D004826 5.3e-46 187.6 100 91.0
FAN23G1990 Fragaria x ananassa HOM05D004177 ORTHO05D004826 5.3e-46 187.6 100 90.0
BcaC06g32302 Brassica carinata HOM05D004177 ORTHO05D004826 6.9e-46 187.2 99 90.9
C09p70810 Brassica napus HOM05D004177 ORTHO05D004826 6.9e-46 187.2 99 90.9
Gohir.D10G201700 Gossypium hirsutum HOM05D004177 ORTHO05D004826 6.9e-46 187.2 100 88.0
Gorai.011G226400 Gossypium raimondii HOM05D004177 ORTHO05D004826 6.9e-46 187.2 100 88.0
Sp6g36980 Schrenkiella parvula HOM05D004177 ORTHO05D004826 6.9e-46 187.2 99 90.9
Sc14g0000820 Simmondsia chinensis HOM05D004177 ORTHO05D004826 6.9e-46 187.2 101 90.1
AL6G15840 Arabidopsis lyrata HOM05D004177 ORTHO05D004826 9.0e-46 186.8 99 89.9
MELO3C025268.2 Cucumis melo HOM05D004177 ORTHO05D004826 1.2e-45 186.4 100 89.0
BcaB05g21688 Brassica carinata HOM05D004177 ORTHO05D004826 1.5e-45 186.0 100 89.0
Ca_14076_v3 Cicer arietinum L. HOM05D004177 ORTHO05D004826 1.5e-45 186.0 100 90.0
FvH4_1g06830 Fragaria vesca HOM05D004177 ORTHO05D004826 1.5e-45 186.0 100 90.0
FAN28G1160 Fragaria x ananassa HOM05D004177 ORTHO05D004826 1.5e-45 186.0 100 90.0
Lsat_1_v5_gn_8_88021 Lactuca sativa HOM05D004177 ORTHO05D004826 1.5e-45 186.0 100 89.0
SEGI_08410 Sequoiadendron giganteum HOM05D004177 ORTHO05D004826 1.5e-45 186.0 100 88.0
CDE04G2922 Ceratophyllum demersum HOM05D004177 ORTHO05D004826 2.0e-45 185.7 110 82.7
Thecc.10G003500 Theobroma cacao HOM05D004177 ORTHO05D004826 2.0e-45 185.7 100 86.0
TWI12G1142 Tripterygium wilfordii HOM05D004177 ORTHO05D004826 2.0e-45 185.7 100 88.0
Gohir.A10G194600 Gossypium hirsutum HOM05D004177 ORTHO05D004826 2.6e-45 185.3 100 87.0
RcHm_v2.0_Chr2g0092611 Rosa chinensis HOM05D004177 ORTHO05D004826 2.6e-45 185.3 100 91.0
CARHR207300 Cardamine hirsuta HOM05D004177 ORTHO05D004826 4.5e-45 184.5 99 88.9
Cc06_g10990 Coffea canephora HOM05D004177 ORTHO05D004826 4.5e-45 184.5 100 89.0
Thhalv10013870m.g Eutrema salsugineum HOM05D004177 ORTHO05D004826 4.5e-45 184.5 99 88.9
Aa31LG11G6950 Aethionema arabicum HOM05D004177 ORTHO05D004826 7.6e-45 183.7 100 88.0
TPR.G9556 Trifolium pratense HOM05D004177 ORTHO05D004826 7.6e-45 183.7 101 90.1
AUR62031232 Chenopodium quinoa HOM05D004177 ORTHO05D004826 1.0e-44 183.3 100 87.0
SHI02807 Sapria himalayana HOM05D004177 ORTHO05D004826 1.0e-44 183.3 100 84.0
MSTRG.19533 Avicennia marina HOM05D004177 ORTHO05D004826 1.3e-44 183.0 101 88.1
Eucgr.C00926 Eucalyptus grandis HOM05D004177 ORTHO05D004826 1.3e-44 183.0 100 88.0
MBI04_g06223_MAGBIO Magnolia biondii HOM05D004177 ORTHO05D004826 1.3e-44 183.0 109 83.5
A10p30370 Brassica napus HOM05D004177 ORTHO05D004826 1.7e-44 182.6 100 90.0
MD02G1073000 Malus domestica HOM05D004177 ORTHO05D004826 2.2e-44 182.2 100 87.0
Oeu052128.1 Olea europaea HOM05D004177 ORTHO05D004826 2.2e-44 182.2 101 88.1
unitig_27.g24734 Utricularia gibba HOM05D001806 ORTHO05D004826 2.2e-44 182.2 103 85.4
Haze_25874 Corylus avellana HOM05D004177 ORTHO05D004826 2.9e-44 181.8 95 89.5
Pp3c2_9490 Physcomitrium patens HOM05D004177 ORTHO05D004826 5.0e-44 181.0 100 85.0
PSO596G0001 Papaver somniferum HOM05D004177 ORTHO05D004826 8.5e-44 180.3 100 87.0
vmacro06273 Vaccinium macrocarpon HOM05D004177 ORTHO05D004826 1.9e-43 179.1 91 92.3
AagrBONN_evm.TU.Sc2ySwM_344.1392 Anthoceros agrestis HOM05D004177 ORTHO05D004826 5.5e-43 177.6 100 82.0
Solyc02g080800.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 1.6e-42 176.0 109 80.7
Sopen02g025490 Solanum pennellii HOM05D004177 ORTHO05D004826 1.6e-42 176.0 109 80.7
BraA10t45083Z Brassica rapa HOM05D004177 ORTHO05D004826 2.1e-42 175.6 113 78.8
Carub.0006s0480 Capsella rubella HOM05D004177 ORTHO05D004826 2.1e-42 175.6 99 85.9
Os03g0740600 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 2.1e-42 175.6 110 77.3
HPP92_001732 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.1e-42 175.6 100 81.0
BolC9t59847H Brassica oleracea HOM05D004177 ORTHO05D004826 3.6e-42 174.9 120 75.0
HPP92_014582 Vanilla planifolia HOM05D004177 ORTHO05D004826 4.6e-42 174.5 100 81.0
CAN.G1014.11 Capsicum annuum HOM05D004177 ORTHO05D004826 1.0e-41 173.3 109 78.0
Peaxi162Scf00178g01719 Petunia axillaris HOM05D004177 ORTHO05D004826 1.0e-41 173.3 109 78.9
Nitab4.5_0002695g0050 Nicotiana tabacum HOM05D004177 ORTHO05D004826 1.3e-41 172.9 109 78.0
Nitab4.5_0007963g0020 Nicotiana tabacum HOM05D004177 ORTHO05D004826 1.3e-41 172.9 109 78.0
HPP92_011031 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.3e-41 172.2 100 82.0
Mapoly0001s0219 Marchantia polymorpha HOM05D004177 ORTHO05D004826 5.1e-41 171.0 100 82.0
AagrBONN_evm.TU.Sc2ySwM_344.3440 Anthoceros agrestis HOM05D004177 ORTHO05D004826 6.7e-41 170.6 100 77.0
HPP92_016636 Vanilla planifolia HOM05D004177 ORTHO05D004826 1.1e-40 169.9 100 82.0
Zm00001eb085620 Zea mays HOM05D004177 ORTHO05D004826 1.9e-40 169.1 100 77.0
SGA_v2.0_scaffold439G51638 Striga asiatica HOM05D004177 ORTHO05D004826 4.3e-40 167.9 86 93.0
Solyc02g080790.4 Solanum lycopersicum HOM05D004177 ORTHO05D004826 9.7e-40 166.8 106 78.3
ATR0789G091 Amborella trichopoda HOM05D004177 ORTHO05D004826 1.3e-39 166.4 100 84.0
SMO337G0022 Selaginella moellendorffii HOM05D004177 ORTHO05D004826 1.7e-39 166.0 100 78.0
Sopen02g025480 Solanum pennellii HOM05D004177 ORTHO05D004826 2.8e-39 165.2 106 77.4
HanXRQChr13g0409461 Helianthus annuus HOM05D004177 ORTHO05D004826 6.3e-39 164.1 104 79.8
Cre01.g018950 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 1.4e-38 162.9 99 75.8
AagrBONN_evm.TU.Sc2ySwM_362.473 Anthoceros agrestis HOM05D004177 ORTHO05D004826 2.4e-38 162.2 101 75.2
CSS0022162 Camellia sinensis var. sinensis HOM05D004177 ORTHO05D004826 1.2e-37 159.8 97 80.4
MCO16G096 Micromonas commoda HOM05D004177 ORTHO05D004826 1.3e-36 156.4 101 76.2
PRCOL_00001978 Prasinoderma coloniale HOM05D004177 ORTHO05D004826 1.3e-36 156.4 99 75.8
Hund18418 Selenicereus undatus HOM05D004177 ORTHO05D004826 8.5e-36 153.7 80 92.5
Zm00001eb215220 Zea mays HOM05D004177 ORTHO05D004826 1.1e-35 153.3 100 74.0
FAN26G0736 Fragaria x ananassa HOM05D004177 ORTHO05D004826 4.2e-35 151.4 82 90.2
Cre08.g369800 Chlamydomonas reinhardtii HOM05D004177 ORTHO05D004826 7.2e-35 150.6 99 68.7
Oeu062209.1 Olea europaea HOM05D004177 ORTHO05D004826 3.6e-34 148.3 106 74.5
Oeu062208.1 Olea europaea HOM05D004177 ORTHO05D004826 6.1e-34 147.5 106 73.6
Oeu062213.1 Olea europaea HOM05D004177 ORTHO05D004826 7.9e-34 147.1 106 73.6
Os09g0421100 Oryza sativa ssp. japonica HOM05D004177 ORTHO05D004826 3.0e-33 145.2 89 77.5
Oeu062211.1 Olea europaea HOM05D004177 ORTHO05D004826 3.3e-32 141.7 105 70.5
Haze_27186 Corylus avellana HOM05D004177 ORTHO05D004826 3.1e-30 135.2 110 61.8
Actinidia03786 Actinidia chinensis HOM05D004177 ORTHO05D004826 2.6e-29 132.1 78 84.6
Oeu039826.4 Olea europaea HOM05D002851 ORTHO05D003084 8.2e-23 110.5 63 84.1
Aa31sc206G30 Aethionema arabicum HOM05D005780 ORTHO05D004826 3.2e-19 98.6 102 51.0
Nn4g24830 Nelumbo nucifera HOM05D004177 ORTHO05D004826 2.0e-13 79.3 36 94.4
Actinidia39745 Actinidia chinensis HOM05D004177 ORTHO05D004826 2.2e-12 75.9 47 76.6
RcHm_v2.0_Chr6g0296851 Rosa chinensis HOM05D004177 ORTHO05D004826 5.0e-12 74.7 47 78.7
Oeu056107.1 Olea europaea HOM05D004177 ORTHO05D004826 1.5e-11 73.2 52 71.2
Peaxi162Scf00287g00176 Petunia axillaris HOM05D004177 ORTHO05D004826 5.5e-11 71.2 78 48.7
HPP92_016662 Vanilla planifolia HOM05D004177 ORTHO05D004826 2.1e-10 69.3 44 72.7


User provided reference genes

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