Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 3.4e-28 128.3 66 100.0
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.3e-16 89.7 55 81.8
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 1.5e-15 86.3 62 71.0
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 5.6e-15 84.3 53 81.1
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 7.4e-15 84.0 56 73.2
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 1.3e-14 83.2 53 81.1
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 1.3e-14 83.2 53 79.2
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.6e-14 82.8 54 74.1
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.6e-14 82.8 51 80.4
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 2.1e-14 82.4 54 75.9
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 2.8e-14 82.0 57 73.7
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 3.7e-14 81.6 57 71.9
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 3.7e-14 81.6 57 71.9
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 3.7e-14 81.6 57 71.9
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 4.8e-14 81.3 49 81.6
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 6.2e-14 80.9 57 71.9
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.2e-14 80.9 50 80.0
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.2e-14 80.9 54 75.9
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 6.2e-14 80.9 57 75.4
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 8.1e-14 80.5 54 75.9
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 8.1e-14 80.5 56 73.2
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 1.1e-13 80.1 57 68.4
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 1.1e-13 80.1 54 74.1
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 1.1e-13 80.1 56 73.2
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 1.8e-13 79.3 54 72.2
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 2.4e-13 79.0 52 76.9
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 2.4e-13 79.0 48 83.3
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 2.4e-13 79.0 56 73.2
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 2.4e-13 79.0 54 74.1
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 3.1e-13 78.6 52 75.0
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 3.1e-13 78.6 58 69.0
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 3.1e-13 78.6 54 75.9
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 3.1e-13 78.6 54 70.4
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 4.0e-13 78.2 56 71.4
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 4.0e-13 78.2 54 74.1
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 4.0e-13 78.2 62 67.7
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 4.0e-13 78.2 49 71.4
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 5.3e-13 77.8 52 75.0
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 6.9e-13 77.4 50 72.0
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 6.9e-13 77.4 57 70.2
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 9.0e-13 77.0 54 72.2
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 9.0e-13 77.0 54 70.4
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 1.2e-12 76.6 60 68.3
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 1.2e-12 76.6 54 74.1
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.2e-12 76.6 54 74.1
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 1.2e-12 76.6 56 71.4
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 1.2e-12 76.6 53 75.5
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 1.5e-12 76.3 65 63.1
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.5e-12 76.3 61 67.2
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 2.0e-12 75.9 50 78.0
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 2.0e-12 75.9 61 65.6
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 2.0e-12 75.9 51 72.5
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 2.6e-12 75.5 49 77.6
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 3.4e-12 75.1 44 86.4
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 4.5e-12 74.7 56 69.6
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 4.5e-12 74.7 56 69.6
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 5.8e-12 74.3 50 74.0
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 1.3e-11 73.2 45 84.4
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.2e-11 72.4 54 68.5
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 2.2e-11 72.4 51 70.6
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.2e-11 72.4 42 83.3
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.2e-11 72.4 48 77.1
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 2.9e-11 72.0 54 68.5
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 4.9e-11 71.2 44 79.5
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 4.9e-11 71.2 51 68.6
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 6.5e-11 70.9 55 67.3
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 6.5e-11 70.9 56 66.1
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 6.5e-11 70.9 51 68.6
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 1.9e-10 69.3 61 59.0
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 2.5e-10 68.9 44 79.5
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.5e-10 68.9 61 60.7
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 3.2e-10 68.6 62 62.9
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 3.2e-10 68.6 45 75.6
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 4.2e-10 68.2 54 66.7
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 4.2e-10 68.2 56 69.6
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 9.3e-10 67.0 53 67.9
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 9.3e-10 67.0 54 66.7
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.6e-09 66.2 54 66.7
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 2.7e-09 65.5 44 75.0
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 3.5e-09 65.1 53 58.5
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 7.9e-09 63.9 56 60.7
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 1.3e-08 63.2 49 65.3
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.3e-08 62.4 43 74.4
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 2.3e-08 62.4 48 64.6
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 3.9e-08 61.6 37 81.1
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 8.7e-08 60.5 43 72.1
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 8.7e-08 60.5 57 52.6
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 8.7e-08 60.5 57 52.6
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 2.5e-07 58.9 54 63.0
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 2.5e-07 58.9 54 59.3


User provided reference genes

Program Settings