Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 1.7e-48 195.7 99 100.0
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 2.3e-45 185.3 97 93.8
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 5.2e-45 184.1 95 96.8
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 6.8e-45 183.7 98 93.9
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 1.2e-44 183.0 95 96.8
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.5e-44 182.6 98 92.9
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 2.6e-44 181.8 95 95.8
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.6e-44 181.8 95 95.8
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 2.6e-44 181.8 95 95.8
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 3.4e-44 181.4 95 94.7
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 5.7e-44 180.6 98 91.8
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 5.7e-44 180.6 96 92.7
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 5.7e-44 180.6 96 91.7
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 5.7e-44 180.6 95 94.7
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 1.3e-43 179.5 92 97.8
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.3e-43 179.5 96 91.7
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 1.3e-43 179.5 95 93.7
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.3e-43 179.5 96 92.7
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.2e-43 178.7 94 94.7
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 2.8e-43 178.3 92 95.7
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 3.7e-43 177.9 92 94.6
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 3.7e-43 177.9 97 92.8
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 4.8e-43 177.6 92 95.7
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 4.8e-43 177.6 95 91.6
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 6.3e-43 177.2 92 95.7
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 6.3e-43 177.2 97 89.7
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 8.3e-43 176.8 95 92.6
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 8.3e-43 176.8 92 95.7
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.1e-42 176.4 92 95.7
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 1.1e-42 176.4 92 95.7
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.1e-42 176.4 92 95.7
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.1e-42 176.4 92 95.7
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.1e-42 176.4 92 95.7
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 1.4e-42 176.0 99 90.9
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.4e-42 176.0 92 94.6
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.4e-42 176.0 92 93.5
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 1.4e-42 176.0 92 93.5
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 1.4e-42 176.0 92 94.6
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 1.8e-42 175.6 92 94.6
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 2.4e-42 175.3 92 94.6
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 2.4e-42 175.3 92 94.6
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 3.1e-42 174.9 92 93.5
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 3.1e-42 174.9 92 93.5
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 4.1e-42 174.5 92 93.5
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 7.0e-42 173.7 95 94.7
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 7.0e-42 173.7 92 93.5
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 7.0e-42 173.7 92 93.5
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 9.1e-42 173.3 96 91.7
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.6e-41 172.6 92 92.4
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 1.6e-41 172.6 95 92.6
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 1.6e-41 172.6 95 91.6
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.6e-41 172.6 92 92.4
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.6e-41 172.6 92 92.4
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 1.6e-41 172.6 92 92.4
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.0e-41 172.2 98 85.7
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 2.7e-41 171.8 92 92.4
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 3.5e-41 171.4 95 90.5
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 3.5e-41 171.4 95 90.5
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 3.5e-41 171.4 95 90.5
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 3.5e-41 171.4 92 91.3
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 1.0e-40 169.9 90 93.3
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 2.9e-40 168.3 92 93.5
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.9e-40 168.3 94 87.2
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 6.5e-40 167.2 92 92.4
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 2.5e-39 165.2 90 93.3
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 3.2e-39 164.9 97 87.6
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 5.5e-39 164.1 98 89.8
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 2.8e-38 161.8 97 86.6
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 6.1e-38 160.6 95 90.5
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.4e-37 159.5 93 86.0
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.4e-37 159.5 93 86.0
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 5.2e-37 157.5 80 97.5
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 6.8e-37 157.1 121 71.1
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.8e-37 157.1 86 91.9
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.4e-36 154.5 85 87.1
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 5.7e-36 154.1 85 87.1
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.3e-35 152.9 84 88.1
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 8.3e-35 150.2 77 94.8
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 7.8e-33 143.7 77 93.5
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.2e-30 136.3 106 74.5
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 7.5e-28 127.1 105 70.5
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 9.8e-28 126.7 100 68.0
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 5.9e-25 117.5 183 43.7
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 1.3e-24 116.3 74 74.3
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 1.7e-24 115.9 105 62.9
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 6.6e-24 114.0 59 96.6
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 8.6e-24 113.6 177 44.6
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 1.2e-22 109.8 63 84.1
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 2.8e-22 108.6 55 98.2
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.1e-21 106.7 62 85.5
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 4.0e-21 104.8 58 89.7
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 5.2e-21 104.4 56 92.9
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.2e-20 103.2 52 98.1
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 1.2e-20 103.2 52 98.1
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 1.2e-20 103.2 52 98.1
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 1.2e-20 103.2 52 98.1
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 1.2e-20 103.2 52 98.1
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 2.0e-20 102.4 207 39.6
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 5.8e-20 100.9 52 94.2
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 5.8e-20 100.9 52 96.2
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 7.5e-20 100.5 52 96.2
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.4e-18 96.3 52 92.3
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 3.9e-16 88.2 45 93.3
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 6.6e-16 87.4 48 89.6
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 6.6e-16 87.4 48 89.6
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.3e-15 85.1 97 54.6
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 2.3e-13 79.0 40 90.0
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 8.9e-13 77.0 40 90.0
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 8.9e-13 77.0 40 97.5
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 8.9e-13 77.0 81 55.6
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 8.9e-13 77.0 40 90.0
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 7.5e-12 73.9 40 95.0
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 7.5e-12 73.9 42 81.0
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 1.7e-11 72.8 41 87.8
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 4.9e-11 71.2 49 77.6
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 3.5e-09 65.1 40 77.5
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 3.0e-08 62.0 35 88.6
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 3.9e-08 61.6 44 75.0
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 1.1e-07 60.1 72 51.4
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 8.1e-06 53.9 35 77.1


User provided reference genes

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