Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 7.4e-83 310.5 154 100.0
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 1.5e-46 189.9 168 66.1
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 2.5e-38 162.5 168 54.2
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 8.9e-36 154.1 150 58.0
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 2.8e-29 132.5 170 48.8
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 6.2e-29 131.3 171 48.0
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 1.8e-28 129.8 137 49.6
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 1.1e-25 120.6 173 43.9
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 2.4e-25 119.4 113 57.5
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 4.2e-25 118.6 130 48.5
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 6.0e-24 114.8 159 47.2
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 1.7e-23 113.2 173 42.2
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.1e-22 110.5 138 49.3
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 7.3e-22 107.8 166 45.2
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 3.6e-21 105.5 160 42.5
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 6.2e-21 104.8 222 34.2
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.4e-20 103.6 139 47.5
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 1.4e-20 103.6 127 47.2
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 1.4e-20 103.6 125 48.8
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-19 100.1 125 46.4
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.5e-19 100.1 125 46.4
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 2.6e-19 99.4 196 38.3
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 3.4e-19 99.0 164 38.4
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 4.4e-19 98.6 133 40.6
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 9.9e-19 97.4 196 41.3
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 1.3e-18 97.1 166 39.8
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 2.2e-18 96.3 137 43.1
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 2.2e-18 96.3 138 44.2
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 2.2e-18 96.3 165 38.2
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 4.9e-18 95.1 176 40.9
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.9e-18 95.1 189 39.2
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 6.4e-18 94.7 137 44.5
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 6.4e-18 94.7 173 36.4
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 6.4e-18 94.7 146 41.8
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 8.4e-18 94.4 163 39.3
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 1.1e-17 94.0 139 43.9
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 1.1e-17 94.0 139 43.9
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.1e-17 94.0 166 38.0
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.4e-17 93.6 169 40.2
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 1.4e-17 93.6 189 39.2
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.4e-17 93.6 189 39.2
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.4e-17 93.6 189 39.2
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.9e-17 93.2 159 39.6
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.4e-17 92.8 147 41.5
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.4e-17 92.8 145 40.7
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 3.5e-16 89.0 162 37.7
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 3.5e-16 89.0 173 35.8
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 4.6e-16 88.6 122 41.8
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.0e-15 87.4 189 38.1
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 1.3e-15 87.0 176 36.9
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 3.0e-15 85.9 121 47.1
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 3.0e-15 85.9 169 36.7
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 3.9e-15 85.5 137 40.9
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 3.9e-15 85.5 168 37.5
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 3.9e-15 85.5 162 35.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 5.1e-15 85.1 183 36.1
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 5.1e-15 85.1 118 44.1
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 1.5e-14 83.6 129 40.3
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 1.5e-14 83.6 162 35.2
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 3.3e-14 82.4 85 54.1
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 4.3e-14 82.0 183 35.5
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 5.6e-14 81.6 58 67.2
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 9.6e-14 80.9 58 67.2
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 1.6e-13 80.1 58 65.5
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.6e-13 79.0 79 53.2
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 1.4e-12 77.0 144 36.8
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-12 77.0 144 36.8
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 1.4e-12 77.0 144 36.8
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.4e-12 77.0 69 56.5
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 1.8e-12 76.6 143 37.8
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 1.8e-12 76.6 143 37.8
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 2.4e-12 76.3 58 63.8
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 5.3e-12 75.1 71 56.3
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 6.9e-12 74.7 74 51.4
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 9.0e-12 74.3 153 35.9
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 9.0e-12 74.3 80 50.0
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.2e-11 73.9 52 65.4
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-11 73.6 134 39.6
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 2.0e-11 73.2 125 37.6
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 2.0e-11 73.2 182 33.0
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.6e-11 72.8 120 41.7
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 4.5e-11 72.0 171 31.0
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 5.8e-11 71.6 97 42.3
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 5.8e-11 71.6 101 44.6
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 7.6e-11 71.2 50 66.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 9.9e-11 70.9 63 54.0
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.7e-10 70.1 63 58.7
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 2.2e-10 69.7 125 36.8
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 2.2e-10 69.7 125 36.8
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 2.2e-10 69.7 125 36.8
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 2.2e-10 69.7 57 59.6
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 2.9e-10 69.3 56 55.4
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 2.9e-10 69.3 101 42.6
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 2.9e-10 69.3 169 33.1
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 2.9e-10 69.3 117 40.2
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 6.4e-10 68.2 63 57.1
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 6.4e-10 68.2 63 57.1
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 8.4e-10 67.8 108 40.7
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.4e-09 67.0 63 55.6
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 1.9e-09 66.6 55 60.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.9e-09 66.6 63 52.4
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 5.5e-09 65.1 97 40.2
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 5.5e-09 65.1 97 40.2
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 7.1e-09 64.7 254 26.8
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 9.3e-09 64.3 77 46.8
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.2e-08 63.9 50 62.0
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 1.6e-08 63.5 106 36.8
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 1.6e-08 63.5 79 45.6
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.1e-08 63.2 59 52.5
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.7e-08 62.8 114 37.7
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 1.0e-07 60.8 130 35.4
AUR62009849 Chenopodium quinoa HOM05D003238 ORTHO05D003571 1.3e-07 60.5 101 38.6
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.3e-07 60.5 199 29.6
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 1.8e-07 60.1 131 34.4
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 1.8e-07 60.1 106 34.9
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.8e-07 60.1 203 26.6
Lsat_1_v5_gn_5_142981 Lactuca sativa HOM05D003238 ORTHO05D003571 2.3e-07 59.7 62 53.2
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.3e-07 59.7 49 57.1
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.9e-07 58.9 126 33.3
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 6.7e-07 58.2 72 47.2
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 6.7e-07 58.2 71 45.1
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 8.7e-07 57.8 58 50.0
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 1.5e-06 57.0 96 38.5
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.5e-06 57.0 122 36.1
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.5e-06 57.0 108 35.2
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 1.9e-06 56.6 112 34.8
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 1.9e-06 56.6 60 46.7
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 1.9e-06 56.6 60 46.7
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 1.9e-06 56.6 60 46.7
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 1.9e-06 56.6 120 35.0
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 2.5e-06 56.2 106 37.7
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 2.5e-06 56.2 90 41.1
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 2.5e-06 56.2 106 35.8
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 2.5e-06 56.2 46 58.7
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.3e-06 55.8 58 50.0
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 3.3e-06 55.8 60 46.7
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 3.3e-06 55.8 60 46.7
Carub.0001s1726 Capsella rubella HOM05D003238 ORTHO05D003571 3.3e-06 55.8 64 45.3
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 3.3e-06 55.8 98 36.7
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 3.3e-06 55.8 115 34.8
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 3.3e-06 55.8 108 37.0
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 3.3e-06 55.8 98 37.8
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 3.3e-06 55.8 98 38.8
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 4.3e-06 55.5 60 46.7
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 4.3e-06 55.5 71 45.1
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 4.3e-06 55.5 112 33.9
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 5.6e-06 55.1 113 33.6
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 5.6e-06 55.1 98 38.8
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 5.6e-06 55.1 153 31.4
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 5.6e-06 55.1 98 37.8
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 5.6e-06 55.1 193 30.1
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 5.6e-06 55.1 142 31.7
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 5.6e-06 55.1 96 38.5
VMungo0720G2789 Vigna mungo HOM05D003238 ORTHO05D003571 7.4e-06 54.7 74 44.6
AT1G17490 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 9.6e-06 54.3 58 48.3
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 9.6e-06 54.3 173 28.3


User provided reference genes

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