Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0126041 Helianthus annuus HOM05D003814 ORTHO05D004399 9.3e-206 719.9 350 100.0
HanXRQChr11g0341161 Helianthus annuus HOM05D003814 ORTHO05D004399 2.2e-138 496.1 356 73.6
HanXRQChr04g0110661 Helianthus annuus HOM05D003814 ORTHO05D004399 8.9e-132 474.2 294 78.6
HanXRQChr04g0126191 Helianthus annuus HOM05D003814 ORTHO05D004399 4.9e-122 441.8 353 64.3
Lsat_1_v5_gn_6_92600 Lactuca sativa HOM05D003814 ORTHO05D004399 1.7e-95 353.6 356 53.1
Lsat_1_v5_gn_1_71940 Lactuca sativa HOM05D003814 ORTHO05D004399 2.6e-83 313.2 360 48.1
Lsat_1_v5_gn_8_86340 Lactuca sativa HOM05D003814 ORTHO05D004399 4.8e-77 292.4 361 48.8
HanXRQChr04g0107941 Helianthus annuus HOM05D003814 ORTHO05D004399 4.8e-69 265.8 359 44.8
ECA236G4439 Erigeron canadensis HOM05D003814 ORTHO05D004399 8.2e-61 238.4 343 44.9
ECA246G3486 Erigeron canadensis HOM05D003814 ORTHO05D004399 2.3e-55 220.3 327 42.2
ECA236G4104 Erigeron canadensis HOM05D003814 ORTHO05D004399 6.3e-53 212.2 354 38.4
Hma1.2p1_0169F.1_g074710 Hydrangea macrophylla HOM05D003814 ORTHO05D004399 7.9e-48 195.3 359 33.1
Dinv25578 Davidia involucrata HOM05D003814 ORTHO05D004399 8.8e-47 191.8 359 34.8
Prupe.7G202800 Prunus persica HOM05D003814 ORTHO05D004399 1.1e-46 191.4 350 36.3
QL05p073999 Quercus lobata HOM05D003814 ORTHO05D004399 1.4e-44 184.5 360 33.3
Ciclev10007128m.g Citrus clementina HOM05D003814 ORTHO05D004399 9.1e-44 181.8 361 32.7
CiPaw.01G298600 Carya illinoinensis HOM05D003814 ORTHO05D004399 2.6e-43 180.3 369 34.7
TWI53G0525 Tripterygium wilfordii HOM05D003814 ORTHO05D004399 2.6e-43 180.3 357 32.5
FvH4_1g08170 Fragaria vesca HOM05D003814 ORTHO05D004399 3.8e-42 176.4 363 33.3
FAN19G0873 Fragaria x ananassa HOM05D003814 ORTHO05D004399 3.8e-42 176.4 363 33.3
FAN26G3410 Fragaria x ananassa HOM05D003814 ORTHO05D004399 4.2e-41 172.9 363 33.6
FAN26G2103 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.2e-40 171.4 363 33.6
Haze_11118 Corylus avellana HOM05D003814 ORTHO05D004399 2.1e-40 170.6 361 30.5
Lsat_1_v5_gn_8_83741 Lactuca sativa HOM05D003814 ORTHO05D004399 6.1e-40 169.1 256 34.8
Nitab4.5_0000073g0260 Nicotiana tabacum HOM05D003814 ORTHO05D004399 2.3e-39 167.2 376 31.9
MD15G1214200 Malus domestica HOM05D003814 ORTHO05D004399 3.0e-39 166.8 382 34.3
Haze_08071 Corylus avellana HOM05D003814 ORTHO05D004399 8.8e-39 165.2 309 33.3
Potri.008G038000 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.1e-38 164.9 367 30.8
Potri.010G224400 Populus trichocarpa HOM05D003814 ORTHO05D004399 3.3e-38 163.3 363 31.4
Duzib187G0024 Durio zibethinus HOM05D003814 ORTHO05D004399 2.8e-37 160.2 368 31.0
Thecc.09G080800 Theobroma cacao HOM05D003814 ORTHO05D004399 4.8e-37 159.5 372 32.0
DCAR_028786 Daucus carota HOM05D003814 ORTHO05D004399 6.3e-37 159.1 357 32.8
FAN23G2856 Fragaria x ananassa HOM05D003814 ORTHO05D004399 8.2e-37 158.7 351 32.8
Cc08_g07160 Coffea canephora HOM05D003814 ORTHO05D004399 1.4e-36 157.9 377 32.1
Duzib168G0557 Durio zibethinus HOM05D003814 ORTHO05D004399 2.4e-36 157.1 370 31.4
Lsat_1_v5_gn_8_99821 Lactuca sativa HOM05D002339 ORTHO05D004399 4.1e-36 156.4 257 33.1
Manes.04G143500 Manihot esculenta HOM05D003814 ORTHO05D004399 1.6e-35 154.5 353 31.7
RcHm_v2.0_Chr2g0094241 Rosa chinensis HOM05D003814 ORTHO05D004399 2.0e-35 154.1 358 30.4
Thecc.06G118300 Theobroma cacao HOM05D003814 ORTHO05D004399 2.0e-35 154.1 354 30.5
Prupe.7G202900 Prunus persica HOM05D003814 ORTHO05D004399 4.5e-35 152.9 359 32.0
TAR636G0432 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.5e-33 147.1 360 30.6
Migut.E01439 Erythranthe guttata HOM05D003814 ORTHO05D004399 4.2e-33 146.4 402 29.4
FAN28G0169 Fragaria x ananassa HOM05D003814 ORTHO05D004399 4.2e-33 146.4 275 35.6
Potri.008G214000 Populus trichocarpa HOM05D003814 ORTHO05D004399 5.5e-33 146.0 301 31.9
Potri.014G187100 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.6e-32 144.4 300 30.7
Peaxi162Scf00928g00024 Petunia axillaris HOM05D003814 ORTHO05D004399 1.8e-31 141.0 371 31.5
Cfa001318 Carpinus fangiana HOM05D003814 ORTHO05D004399 4.0e-31 139.8 364 29.7
PGSC0003DMG400041501 Solanum tuberosum HOM05D003814 ORTHO05D004399 5.2e-31 139.4 379 29.6
ClCG10G017950 Citrullus lanatus HOM05D003814 ORTHO05D004399 1.2e-30 138.3 307 31.9
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 7.5e-30 135.6 354 28.2
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 9.7e-30 135.2 272 32.7
Nitab4.5_0000343g0080 Nicotiana tabacum HOM05D003814 ORTHO05D004399 1.7e-29 134.4 326 28.5
Sabra10G0173600 Salix brachista HOM05D001546 ORTHO05D004399 1.7e-29 134.4 312 30.8
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.7e-29 134.4 354 28.2
Potri.017G066400 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.2e-29 134.0 285 30.9
Sabra16G0039400 Salix brachista HOM05D003814 ORTHO05D004399 6.3e-29 132.5 292 31.2
Lsat_1_v5_gn_2_42360 Lactuca sativa HOM05D003814 ORTHO05D004399 8.3e-29 132.1 285 29.5
Potri.007G037500 Populus trichocarpa HOM05D003814 ORTHO05D004399 8.3e-29 132.1 303 28.7
AL2G10680 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 1.1e-28 131.7 330 27.0
Sed0024854 Sechium edule HOM05D003814 ORTHO05D004399 1.1e-28 131.7 369 29.3
PGR004G1882 Punica granatum HOM05D003814 ORTHO05D004399 5.3e-28 129.4 369 28.5
Gohir.A07G014250 Gossypium hirsutum HOM05D003814 ORTHO05D004399 9.1e-28 128.6 393 25.2
TAR374G0716 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.6e-27 127.9 353 27.8
Gohir.A07G014200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.0e-27 127.5 392 25.8
TAR626G0622 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.7e-27 127.1 353 27.5
SGA_v2.0_scaffold4G02155 Striga asiatica HOM05D003814 ORTHO05D004399 3.5e-27 126.7 365 29.0
Carub.0002s0052 Capsella rubella HOM05D003814 ORTHO05D004399 4.5e-27 126.3 354 26.0
Potri.006G167500 Populus trichocarpa HOM05D003814 ORTHO05D004399 5.9e-27 125.9 302 29.5
Gohir.D04G023700 Gossypium hirsutum HOM05D003814 ORTHO05D004399 7.7e-27 125.6 378 25.7
CAN.G625.43 Capsicum annuum HOM05D003814 ORTHO05D004399 1.0e-26 125.2 386 28.2
CARHR050300 Cardamine hirsuta HOM05D003814 ORTHO05D004399 1.0e-26 125.2 361 28.8
Peaxi162Scf00047g10141 Petunia axillaris HOM05D003814 ORTHO05D004399 1.0e-26 125.2 304 30.3
PGR004G0767 Punica granatum HOM05D003814 ORTHO05D004399 1.7e-26 124.4 354 29.4
PGSC0003DMG400046351 Solanum tuberosum HOM05D003814 ORTHO05D004399 3.8e-26 123.2 275 30.2
BcaB07g31514 Brassica carinata HOM05D003814 ORTHO05D004399 5.0e-26 122.9 353 26.3
Gorai.012G033100 Gossypium raimondii HOM05D003814 ORTHO05D004399 6.5e-26 122.5 380 25.0
Gohir.A05G386550 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.5e-25 121.3 373 24.9
Gohir.D04G029200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.9e-25 120.9 380 25.8
A09p14840 Brassica napus HOM05D003814 ORTHO05D004399 3.2e-25 120.2 362 26.0
BcaB07g31449 Brassica carinata HOM05D003814 ORTHO05D004399 5.5e-25 119.4 369 25.7
BcaC04g22552 Brassica carinata HOM05D003814 ORTHO05D004399 7.2e-25 119.0 366 26.2
BolC9t54693H Brassica oleracea HOM05D003814 ORTHO05D004399 7.2e-25 119.0 366 26.2
BraA09t37130Z Brassica rapa HOM05D003814 ORTHO05D004399 7.2e-25 119.0 366 26.2
Haze_11116 Corylus avellana HOM05D003054 ORTHO05D003376 7.2e-25 119.0 287 28.2
C09p17970 Brassica napus HOM05D003814 ORTHO05D004399 9.4e-25 118.6 366 26.2
Gohir.D07G013832 Gossypium hirsutum HOM05D003814 ORTHO05D004399 9.4e-25 118.6 354 25.7
Potri.001G462650 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.7e-24 117.1 330 25.8
MELO3C009576.2 Cucumis melo HOM05D003814 ORTHO05D004399 3.6e-24 116.7 374 28.9
Thhalv10023822m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 3.6e-24 116.7 353 27.2
ClCG10G017770 Citrullus lanatus HOM05D003814 ORTHO05D004399 8.0e-24 115.5 360 27.5
Aqoxy5G02065 Aquilegia oxysepala HOM05D003814 ORTHO05D004399 1.0e-23 115.2 357 27.2
FAN26G3081 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.3e-23 114.0 352 28.7
Gorai.001G014600 Gossypium raimondii HOM05D003814 ORTHO05D004399 2.3e-23 114.0 354 25.1
Sp1g34730 Schrenkiella parvula HOM05D003814 ORTHO05D004399 3.0e-23 113.6 365 26.0
AL2G10650 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 4.0e-23 113.2 355 24.8
COL.COLO4_18129 Corchorus olitorius HOM05D003814 ORTHO05D004399 5.2e-23 112.8 352 25.6
AT1G64290 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 6.8e-23 112.5 376 27.1
Carub.0002s0053 Capsella rubella HOM05D003814 ORTHO05D004399 6.8e-23 112.5 289 29.1
CARHR290110 Cardamine hirsuta HOM05D003814 ORTHO05D004399 8.8e-23 112.1 374 26.2
unitig_22.g5424 Utricularia gibba HOM05D003814 ORTHO05D004399 2.6e-22 110.5 359 28.4
MD02G1086300 Malus domestica HOM05D003814 ORTHO05D004399 3.4e-22 110.2 368 29.9
AT1G64295 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 4.4e-22 109.8 352 25.3
Gohir.D04G024036 Gossypium hirsutum HOM05D003814 ORTHO05D004399 5.7e-22 109.4 320 25.0
PGSC0003DMG400037022 Solanum tuberosum HOM05D003814 ORTHO05D004399 5.7e-22 109.4 269 27.5
Peaxi162Scf00067g00233 Petunia axillaris HOM05D003814 ORTHO05D004399 9.8e-22 108.6 239 31.8
Thhalv10028265m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 1.3e-21 108.2 328 25.9
Gohir.A02G162300 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.3e-21 108.2 345 26.1
Gohir.D03G018133 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.3e-21 108.2 381 25.2
Gorai.003G018500 Gossypium raimondii HOM05D003814 ORTHO05D004399 1.3e-21 108.2 381 25.2
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 1.7e-21 107.8 353 27.5
A04p14880 Brassica napus HOM05D003814 ORTHO05D004399 2.2e-21 107.5 282 25.2
BraA04t17126Z Brassica rapa HOM05D003814 ORTHO05D004399 2.2e-21 107.5 282 25.2
FvH4_1g08161 Fragaria vesca HOM05D003814 ORTHO05D004399 4.8e-21 106.3 241 28.6
Aa31LG2G1300 Aethionema arabicum HOM05D003814 ORTHO05D004399 1.1e-20 105.1 360 25.3
Sp1g34780 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.1e-20 105.1 292 28.1
Lsat_1_v5_gn_4_158900 Lactuca sativa HOM05D003814 ORTHO05D004399 4.1e-20 103.2 155 33.5
FAN28G0704 Fragaria x ananassa HOM05D003814 ORTHO05D004399 7.0e-20 102.4 344 27.6
Lsat_1_v5_gn_5_64781 Lactuca sativa HOM05D003814 ORTHO05D004399 1.6e-19 101.3 143 36.4
CiPaw.04G145600 Carya illinoinensis HOM05D003814 ORTHO05D004399 2.0e-19 100.9 152 39.5
Haze_11119 Corylus avellana HOM05D003814 ORTHO05D004399 2.0e-19 100.9 189 34.4
SpUn1086_0010 Schrenkiella parvula HOM05D003814 ORTHO05D004399 3.5e-19 100.1 221 29.4
Carub.0007s3375 Capsella rubella HOM05D003814 ORTHO05D004399 5.9e-19 99.4 337 26.1
BcaC04g22634 Brassica carinata HOM05D003814 ORTHO05D004399 1.3e-18 98.2 338 25.1
CARHR272950 Cardamine hirsuta HOM05D003814 ORTHO05D004399 2.9e-18 97.1 291 24.4
Lsat_1_v5_gn_7_15380 Lactuca sativa HOM05D003814 ORTHO05D004399 8.6e-18 95.5 193 29.5
PSO017G6459 Papaver somniferum HOM05D003814 ORTHO05D004399 2.5e-17 94.0 301 29.6
TAR624G1176 Trochodendron aralioides HOM05D003814 ORTHO05D004399 3.3e-17 93.6 251 27.1
Migut.E01447 Erythranthe guttata HOM05D003814 ORTHO05D004399 9.5e-17 92.0 228 30.7
MD15G1214100 Malus domestica HOM05D003814 ORTHO05D004399 1.2e-16 91.7 174 33.9
Carub.0007s3374 Capsella rubella HOM05D003814 ORTHO05D004399 8.0e-16 89.0 293 26.6
Sp7g03960 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.0e-15 88.6 291 27.5
Zm00001eb202740 Zea mays HOM05D003814 ORTHO05D004399 1.4e-15 88.2 374 25.1
FAN23G1165 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.2e-15 86.3 190 32.1
FAN19G3124 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.2e-14 85.1 217 27.2
Carub.0007s3376 Capsella rubella HOM05D003814 ORTHO05D004399 2.8e-13 80.5 304 24.3
PGSC0003DMG400035508 Solanum tuberosum HOM05D003814 ORTHO05D004399 1.4e-12 78.2 152 31.6
Thhalv10028201m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 3.2e-12 77.0 228 25.9
PSO478G3480 Papaver somniferum HOM05D003814 ORTHO05D004399 7.0e-12 75.9 292 27.4
FAN26G2210 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.0e-11 74.3 270 26.3
Sp1g34880 Schrenkiella parvula HOM05D003814 ORTHO05D004399 4.5e-11 73.2 174 25.3
C04p48950 Brassica napus HOM05D003814 ORTHO05D004399 3.9e-10 70.1 133 28.6
BolC4t26476H Brassica oleracea HOM05D003814 ORTHO05D004399 3.9e-10 70.1 133 28.6
Lsat_1_v5_gn_8_2320 Lactuca sativa HOM05D003814 ORTHO05D004399 6.6e-10 69.3 119 31.9
Lsat_1_v5_gn_1_81281 Lactuca sativa HOM05D003814 ORTHO05D004399 1.1e-09 68.6 145 30.3
PSO170G5919 Papaver somniferum HOM05D003814 ORTHO05D004399 1.9e-09 67.8 326 20.2
Lsat_1_v5_gn_2_16460 Lactuca sativa HOM05D003814 ORTHO05D004399 2.5e-09 67.4 106 33.0
TAR371G0430 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.5e-09 67.4 295 24.7
Lsat_1_v5_gn_2_46441 Lactuca sativa HOM05D002730 ORTHO05D011082 3.3e-09 67.0 89 34.8
C02p17570 Brassica napus HOM05D003814 ORTHO05D004399 4.3e-09 66.6 267 24.7
FAN28G0391 Fragaria x ananassa HOM05D000007 ORTHO05D015648 4.3e-09 66.6 287 26.5
Thhalv10011009m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 7.3e-09 65.9 299 26.1
Lsat_1_v5_gn_3_98060 Lactuca sativa HOM05D003814 ORTHO05D004399 9.5e-09 65.5 94 34.0
AT2G05360 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 1.2e-08 65.1 152 28.3
Lsat_1_v5_gn_5_52401 Lactuca sativa HOM05D001639 ORTHO05D004140 1.2e-08 65.1 123 32.5
TAR371G0593 Trochodendron aralioides HOM05D000007 ORTHO05D007252 1.6e-08 64.7 295 25.4
TAR371G0448 Trochodendron aralioides HOM05D000007 ORTHO05D007252 2.1e-08 64.3 296 25.3
PSO801G0304 Papaver somniferum HOM05D003814 ORTHO05D004399 3.6e-08 63.5 182 29.7
Lsat_1_v5_gn_2_122201 Lactuca sativa HOM05D003814 ORTHO05D004399 4.7e-08 63.2 106 29.2
TAR371G0292 Trochodendron aralioides HOM05D000007 ORTHO05D007252 4.7e-08 63.2 295 23.7
A09p14250 Brassica napus HOM05D002195 ORTHO05D002898 8.0e-08 62.4 158 27.8
TAR371G0093 Trochodendron aralioides HOM05D000007 ORTHO05D007252 8.0e-08 62.4 303 25.7
TAR636G1188 Trochodendron aralioides HOM05D003814 ORTHO05D004399 8.0e-08 62.4 86 39.5
Lsat_1_v5_gn_1_107740 Lactuca sativa HOM05D001862 ORTHO05D015698 1.4e-07 61.6 89 31.5
FAN26G1160 Fragaria x ananassa HOM05D000007 ORTHO05D015648 1.8e-07 61.2 293 24.2
SalBow1G2869 Salvia bowleyana HOM05D001856 ORTHO05D001959 3.1e-07 60.5 189 29.1
BcaB06g27653 Brassica carinata HOM05D003814 ORTHO05D004399 1.2e-06 58.5 126 28.6
AT5G41720 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 1.5e-06 58.2 166 27.1
Thhalv10012279m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 2.0e-06 57.8 273 24.5
QL04p012713 Quercus lobata HOM05D002420 ORTHO05D002422 2.6e-06 57.4 333 24.9
QL04p013477 Quercus lobata HOM05D002420 ORTHO05D002422 2.6e-06 57.4 333 24.9
Sabra02G0022400 Salix brachista HOM05D003814 ORTHO05D004399 5.8e-06 56.2 94 36.2
vmacro20419 Vaccinium macrocarpon HOM05D002420 ORTHO05D002422 5.8e-06 56.2 254 24.0
ECA236G1426 Erigeron canadensis HOM05D000214 ORTHO05D000131 7.5e-06 55.8 48 52.1


User provided reference genes

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