Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0125291 Helianthus annuus HOM05D007364 ORTHO05D009275 2.2e-64 248.8 129 100.0
Lsat_1_v5_gn_4_106261 Lactuca sativa HOM05D007364 ORTHO05D009275 4.5e-33 144.8 129 65.9
ECA232G2752 Erigeron canadensis HOM05D007364 ORTHO05D009275 1.1e-26 123.6 109 65.1
Nitab4.5_0011805g0010 Nicotiana tabacum HOM05D007364 ORTHO05D009275 3.3e-23 112.1 124 50.8
Peaxi162Scf00062g00099 Petunia axillaris HOM05D007364 ORTHO05D009275 8.0e-22 107.5 147 44.9
PGSC0003DMG400004654 Solanum tuberosum HOM05D007364 ORTHO05D009275 3.4e-20 102.1 123 47.2
Sopen12g034580 Solanum pennellii HOM05D007364 ORTHO05D009275 4.4e-20 101.7 123 46.3
TWI38G2254 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 4.4e-20 101.7 125 48.0
Solyc12g099960.1 Solanum lycopersicum HOM05D007364 ORTHO05D009275 7.5e-20 100.9 122 46.7
Ah.15g094280 Amaranthus hybridus HOM05D007364 ORTHO05D009275 8.3e-19 97.4 122 45.9
CAN.G484.12 Capsicum annuum HOM05D007364 ORTHO05D009275 8.3e-19 97.4 123 45.5
Gohir.D05G115800 Gossypium hirsutum HOM05D007364 ORTHO05D009275 8.3e-19 97.4 125 44.8
Cc09_g07400 Coffea canephora HOM05D007364 ORTHO05D009275 1.4e-18 96.7 122 46.7
Gorai.009G119800 Gossypium raimondii HOM05D007364 ORTHO05D009275 1.4e-18 96.7 125 44.8
Nitab4.5_0001925g0240 Nicotiana tabacum HOM05D007364 ORTHO05D009275 1.4e-18 96.7 107 47.7
TPR.G6288 Trifolium pratense HOM05D007364 ORTHO05D009275 1.4e-18 96.7 120 48.3
AUR62025707 Chenopodium quinoa HOM05D007364 ORTHO05D009275 3.2e-18 95.5 123 46.3
TWI63G0101 Tripterygium wilfordii HOM05D007364 ORTHO05D009275 4.1e-18 95.1 125 45.6
EL10Ac7g18129 Beta vulgaris HOM05D007364 ORTHO05D009275 7.0e-18 94.4 121 46.3
AUR62001324 Chenopodium quinoa HOM05D007364 ORTHO05D009275 7.0e-18 94.4 123 46.3
Gohir.A05G115400 Gossypium hirsutum HOM05D007364 ORTHO05D009275 7.0e-18 94.4 125 44.0
Thecc.06G054700 Theobroma cacao HOM05D007364 ORTHO05D009275 9.2e-18 94.0 140 42.1
TAR625G0136 Trochodendron aralioides HOM05D007364 ORTHO05D009275 9.2e-18 94.0 136 44.9
Haze_16200 Corylus avellana HOM05D007364 ORTHO05D009275 1.2e-17 93.6 124 45.2
Duzib235G1177 Durio zibethinus HOM05D007364 ORTHO05D009275 1.2e-17 93.6 128 43.0
Lalb_Chr07g0185511 Lupinus albus HOM05D007364 ORTHO05D009275 1.2e-17 93.6 120 47.5
CANSAT78G1269 Cannabis sativa HOM05D007364 ORTHO05D009275 1.6e-17 93.2 118 45.8
Glyma.05G173100 Glycine max HOM05D007364 ORTHO05D009275 2.7e-17 92.4 120 46.7
Lj4g0012611 Lotus japonicus HOM05D007364 ORTHO05D009275 2.7e-17 92.4 120 46.7
Manes.14G008700 Manihot esculenta HOM05D007364 ORTHO05D009275 4.6e-17 91.7 118 43.2
Cfa003431 Carpinus fangiana HOM05D007364 ORTHO05D009275 5.9e-17 91.3 136 41.9
arahy.Tifrunner.gnm1.ann1.A7U39C Arachis hypogaea HOM05D007364 ORTHO05D009275 7.8e-17 90.9 120 44.2
arahy.Tifrunner.gnm1.ann1.TFQ65X Arachis hypogaea HOM05D007364 ORTHO05D009275 7.8e-17 90.9 120 44.2
BcaB03g13030 Brassica carinata HOM05D007364 ORTHO05D009275 1.0e-16 90.5 130 40.0
Migut.I01209 Erythranthe guttata HOM05D007364 ORTHO05D009275 1.3e-16 90.1 127 43.3
FvH4_6g36820 Fragaria vesca HOM05D007364 ORTHO05D009275 1.3e-16 90.1 115 47.0
FAN02G1908 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.3e-16 90.1 115 47.0
FAN05G2474 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.3e-16 90.1 115 47.0
FAN14G5026 Fragaria x ananassa HOM05D007364 ORTHO05D009275 1.3e-16 90.1 115 47.0
Psat7g058640 Pisum sativum HOM05D007364 ORTHO05D009275 1.3e-16 90.1 120 45.0
PSO063G5199 Papaver somniferum HOM05D007364 ORTHO05D009275 1.7e-16 89.7 115 41.7
Prupe.3G024300 Prunus persica HOM05D007364 ORTHO05D009275 2.3e-16 89.4 117 44.4
Ca_17791_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 3.0e-16 89.0 120 42.5
Ca_29552_v3 Cicer arietinum L. HOM05D007364 ORTHO05D009275 3.0e-16 89.0 120 42.5
Phvul.002G258200 Phaseolus vulgaris HOM05D007364 ORTHO05D009275 3.0e-16 89.0 121 47.9
TAR636G2112 Trochodendron aralioides HOM05D007364 ORTHO05D009275 3.9e-16 88.6 136 42.6
Actinidia21894 Actinidia chinensis HOM05D007364 ORTHO05D009275 5.0e-16 88.2 121 45.5
Glyma.08G130400 Glycine max HOM05D007364 ORTHO05D009275 5.0e-16 88.2 120 45.0
unitig_26.g10058 Utricularia gibba HOM05D007364 ORTHO05D009275 5.0e-16 88.2 130 44.6
Lj9P543T41 Lonicera japonica HOM05D007364 ORTHO05D009275 8.6e-16 87.4 95 56.8
Aqoxy5G03758 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 1.1e-15 87.0 117 43.6
RcHm_v2.0_Chr2g0149211 Rosa chinensis HOM05D007364 ORTHO05D009275 1.1e-15 87.0 115 45.2
Sc15g0001160 Simmondsia chinensis HOM05D000912 ORTHO05D008392 1.1e-15 87.0 114 39.5
VMungo0251G1224 Vigna mungo HOM05D007364 ORTHO05D009275 1.1e-15 87.0 121 47.1
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 1.5e-15 86.7 130 36.9
THA.LOC104812333 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 1.5e-15 86.7 130 40.8
CARHR017250 Cardamine hirsuta HOM05D007364 ORTHO05D009275 1.9e-15 86.3 130 37.7
ClCG07G014710 Citrullus lanatus HOM05D007364 ORTHO05D009275 1.9e-15 86.3 121 40.5
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 2.5e-15 85.9 130 38.5
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 2.5e-15 85.9 130 38.5
Oeu047568.2 Olea europaea HOM05D007364 ORTHO05D009275 2.5e-15 85.9 112 45.5
AT1G16790 Arabidopsis thaliana HOM05D007364 ORTHO05D009275 3.3e-15 85.5 123 39.0
AL1G28960 Arabidopsis lyrata HOM05D007364 ORTHO05D009275 4.3e-15 85.1 130 36.9
BcaC07g38817 Brassica carinata HOM05D007364 ORTHO05D009275 4.3e-15 85.1 130 38.5
Potri.010G254100 Populus trichocarpa HOM05D007364 ORTHO05D009275 4.3e-15 85.1 126 40.5
PGR031G1732 Punica granatum HOM05D007364 ORTHO05D009275 4.3e-15 85.1 137 38.0
FAN09G0058 Fragaria x ananassa HOM05D007364 ORTHO05D009275 5.6e-15 84.7 102 48.0
DCAR_001424 Daucus carota HOM05D007364 ORTHO05D009275 9.5e-15 84.0 121 41.3
Atru.chr1.2614 Acer truncatum HOM05D007364 ORTHO05D009275 1.2e-14 83.6 122 37.7
Thhalv10009015m.g Eutrema salsugineum HOM05D007364 ORTHO05D009275 1.2e-14 83.6 129 38.0
Sed0001602 Sechium edule HOM05D007364 ORTHO05D009275 1.2e-14 83.6 106 42.5
MELO3C010416.2 Cucumis melo HOM05D007364 ORTHO05D009275 1.6e-14 83.2 146 38.4
SGA_v2.0_scaffold71G23970 Striga asiatica HOM05D007364 ORTHO05D009275 2.1e-14 82.8 128 39.8
Aa31LG7G1240 Aethionema arabicum HOM05D007364 ORTHO05D009275 3.6e-14 82.0 132 38.6
Carub.0001s1652 Capsella rubella HOM05D007364 ORTHO05D009275 4.7e-14 81.6 129 35.7
MD09G1166600 Malus domestica HOM05D007364 ORTHO05D009275 4.7e-14 81.6 121 41.3
PSO170G0377 Papaver somniferum HOM05D007364 ORTHO05D009275 4.7e-14 81.6 108 41.7
SalBow6G2338 Salvia bowleyana HOM05D007364 ORTHO05D009275 4.7e-14 81.6 115 43.5
Ciclev10013953m.g Citrus clementina HOM05D007364 ORTHO05D009275 6.2e-14 81.3 142 36.6
Sp1g14930 Schrenkiella parvula HOM05D007364 ORTHO05D009275 6.2e-14 81.3 129 38.0
Hma1.2p1_0191F.1_g083440 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.4e-13 80.1 128 38.3
Hma1.2p1_3076F.1_g332395 Hydrangea macrophylla HOM05D007364 ORTHO05D009275 1.4e-13 80.1 128 38.3
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 1.8e-13 79.7 112 40.2
QL05p088447 Quercus lobata HOM05D007364 ORTHO05D009275 1.8e-13 79.7 124 40.3
Actinidia38815 Actinidia chinensis HOM05D007364 ORTHO05D009275 3.1e-13 79.0 111 44.1
Eucgr.J03185 Eucalyptus grandis HOM05D007364 ORTHO05D009275 3.1e-13 79.0 137 40.1
MBI16_g18204_MAGBIO Magnolia biondii HOM05D007364 ORTHO05D009275 1.2e-12 77.0 125 39.2
THA.LOC104808105 Tarenaya hassleriana HOM05D007364 ORTHO05D009275 1.5e-12 76.6 114 37.7
CsaV3_4G028750 Cucumis sativus L. HOM05D007364 ORTHO05D009275 2.6e-12 75.9 86 45.3
HPP92_017109 Vanilla planifolia HOM05D007364 ORTHO05D009275 3.4e-12 75.5 140 35.7
A06p12720 Brassica napus HOM05D007364 ORTHO05D009275 4.4e-12 75.1 124 35.5
BraA06t24432Z Brassica rapa HOM05D007364 ORTHO05D009275 7.5e-12 74.3 124 35.5
HPP92_017099 Vanilla planifolia HOM05D007364 ORTHO05D009275 1.7e-11 73.2 136 35.3
BcaC05g25538 Brassica carinata HOM05D007364 ORTHO05D009275 2.9e-11 72.4 98 39.8
C05p15020 Brassica napus HOM05D007364 ORTHO05D009275 6.4e-11 71.2 130 35.4
BolC5t30217H Brassica oleracea HOM05D007364 ORTHO05D009275 6.4e-11 71.2 130 35.4
COL.COLO4_38285 Corchorus olitorius HOM05D007364 ORTHO05D009275 3.5e-09 65.5 104 41.3
Aqoxy2G03840 Aquilegia oxysepala HOM05D007364 ORTHO05D009275 7.8e-09 64.3 101 41.6
CiPaw.01G207600 Carya illinoinensis HOM05D007364 ORTHO05D009275 1.1e-07 60.5 51 54.9
LjContig00484g0025496 Lotus japonicus HOM05D007364 ORTHO05D009275 1.1e-07 60.5 90 44.4
CiPaw.01G094100 Carya illinoinensis HOM05D007364 ORTHO05D009275 5.6e-07 58.2 92 38.0
BcaB02g06675 Brassica carinata HOM05D007364 ORTHO05D009275 7.3e-07 57.8 87 37.9
SalBow7G1183 Salvia bowleyana HOM05D003223 ORTHO05D004865 1.2e-06 57.0 101 39.6


User provided reference genes

Program Settings