Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0121291 Helianthus annuus HOM05D004959 ORTHO05D005961 0.0e+00 1999.2 1034 100.0
HanXRQChr12g0366411 Helianthus annuus HOM05D004959 ORTHO05D005961 0.0e+00 1852.0 1039 91.2
ECA233G2209 Erigeron canadensis HOM05D004959 ORTHO05D005961 0.0e+00 1409.4 1060 69.3
Lsat_1_v5_gn_8_33541 Lactuca sativa HOM05D004959 ORTHO05D005961 0.0e+00 1096.6 1046 57.3
Dinv04263 Davidia involucrata HOM05D004959 ORTHO05D005961 3.2e-222 776.2 1117 42.3
Dinv06304 Davidia involucrata HOM05D004959 ORTHO05D005961 9.7e-219 764.6 1118 42.0
Hma1.2p1_0137F.1_g062550 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.8e-210 735.7 1104 40.9
GSVIVG01032944001 Vitis vinifera HOM05D004959 ORTHO05D005961 6.1e-205 718.8 1112 39.7
Lj3A850G96 Lonicera japonica HOM05D004959 ORTHO05D005961 2.2e-202 710.3 1133 40.5
Cfa000659 Carpinus fangiana HOM05D004959 ORTHO05D005961 2.6e-195 686.8 1114 38.8
Actinidia07601 Actinidia chinensis HOM05D004959 ORTHO05D005961 3.4e-195 686.4 1118 40.5
QL04p014830 Quercus lobata HOM05D004959 ORTHO05D005961 9.8e-195 684.9 1117 37.4
QL04p014466 Quercus lobata HOM05D004959 ORTHO05D005961 1.3e-194 684.5 1117 37.3
Cpa.g.sc30.122 Carica papaya HOM05D004959 ORTHO05D005961 1.8e-185 654.1 1094 37.8
Rhsim02G0134800 Rhododendron simsii HOM05D004959 ORTHO05D005961 5.9e-184 649.0 1107 38.8
Rhsim01G0101500 Rhododendron simsii HOM05D004959 ORTHO05D005961 2.5e-182 643.7 1126 38.4
vmacro15931 Vaccinium macrocarpon HOM05D004959 ORTHO05D005961 3.0e-180 636.7 1140 37.6
Thecc.02G004800 Theobroma cacao HOM05D004959 ORTHO05D005961 1.3e-178 631.3 1096 37.2
Sabra18G0102400 Salix brachista HOM05D004959 ORTHO05D005961 2.9e-178 630.2 1117 35.9
Potri.018G118800 Populus trichocarpa HOM05D004959 ORTHO05D005961 6.4e-178 629.0 1116 35.9
TWI63G1138 Tripterygium wilfordii HOM05D004959 ORTHO05D005961 2.0e-176 624.0 1119 35.6
Manes.16G050600 Manihot esculenta HOM05D004959 ORTHO05D005961 4.6e-176 622.9 1126 37.9
Nitab4.5_0010326g0010 Nicotiana tabacum HOM05D004959 ORTHO05D005961 3.3e-174 616.7 1123 35.8
Migut.E00705 Erythranthe guttata HOM05D004959 ORTHO05D005961 3.5e-168 596.7 1128 37.3
Migut.E00612 Erythranthe guttata HOM05D004959 ORTHO05D005961 1.0e-167 595.1 1125 38.7
Nitab4.5_0000036g0080 Nicotiana tabacum HOM05D004959 ORTHO05D005961 1.0e-167 595.1 1123 35.4
PGSC0003DMG400003329 Solanum tuberosum HOM05D004959 ORTHO05D005961 2.3e-167 594.0 1126 35.4
Nn3g21093 Nelumbo nucifera HOM05D004959 ORTHO05D005961 6.6e-167 592.4 1113 36.9
Sopen02g014720 Solanum pennellii HOM05D004959 ORTHO05D005961 2.1e-165 587.4 1126 35.1
Prupe.3G104300 Prunus persica HOM05D004959 ORTHO05D005961 4.7e-165 586.3 1105 35.7
Sed0018634 Sechium edule HOM05D004959 ORTHO05D005961 1.1e-164 585.1 1111 34.1
COL.COLO4_18025 Corchorus olitorius HOM05D004959 ORTHO05D005961 6.8e-164 582.4 1094 34.5
Oeu021359.1 Olea europaea HOM05D004959 ORTHO05D005961 6.8e-164 582.4 1117 35.9
Solyc02g064590.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.9e-162 577.0 1124 35.1
Solyc02g064620.2 Solanum lycopersicum HOM05D004959 ORTHO05D005961 2.9e-162 577.0 1124 35.1
DCAR_026905 Daucus carota HOM05D004959 ORTHO05D005961 4.9e-162 576.2 1117 35.4
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 5.4e-161 572.8 1105 33.7
Gohir.A12G049000 Gossypium hirsutum HOM05D004959 ORTHO05D005961 1.3e-159 568.2 1093 34.6
Duzib248G0683 Durio zibethinus HOM05D004959 ORTHO05D005961 1.7e-159 567.8 1084 35.4
Gorai.008G050400 Gossypium raimondii HOM05D004959 ORTHO05D005961 6.6e-159 565.8 1094 34.3
PGR142G3977 Punica granatum HOM05D004959 ORTHO05D005961 1.9e-158 564.3 1109 36.5
Gohir.D12G047700 Gossypium hirsutum HOM05D004959 ORTHO05D005961 5.6e-158 562.8 1094 34.1
MD13G1224700 Malus domestica HOM05D004959 ORTHO05D005961 5.6e-158 562.8 1103 35.0
FvH4_4g05080 Fragaria vesca HOM05D004959 ORTHO05D005961 1.4e-156 558.1 1097 34.8
CsaV3_5G015760 Cucumis sativus L. HOM05D004959 ORTHO05D005961 8.9e-156 555.4 1110 33.4
CANSAT25G2352 Cannabis sativa HOM05D004959 ORTHO05D005961 1.2e-155 555.1 1079 36.3
Aqoxy5G03195 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 5.8e-155 552.7 1124 34.9
Cc04_g10880 Coffea canephora HOM05D004959 ORTHO05D005961 3.8e-154 550.1 1125 34.0
MELO3C026444.2 Cucumis melo HOM05D004959 ORTHO05D005961 3.8e-154 550.1 1111 33.5
Aqoxy3G03508 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.6e-152 544.7 1124 34.5
FAN12G3376 Fragaria x ananassa HOM05D004959 ORTHO05D005961 4.6e-152 543.1 1106 34.4
TAR622G1187 Trochodendron aralioides HOM05D004959 ORTHO05D005961 1.3e-151 541.6 1003 36.7
Glyma.19G032700 Glycine max HOM05D004959 ORTHO05D005961 5.6e-150 536.2 1099 33.9
CARHR226870 Cardamine hirsuta HOM05D004959 ORTHO05D005961 8.1e-149 532.3 1103 33.5
AT4G20060 Arabidopsis thaliana HOM05D004959 ORTHO05D005961 2.4e-148 530.8 1101 33.3
PSO478G1937 Papaver somniferum HOM05D004959 ORTHO05D005961 8.9e-148 528.9 1114 34.3
Haze_06165 Corylus avellana HOM05D004959 ORTHO05D005961 2.0e-147 527.7 1098 33.9
PSO017G0156 Papaver somniferum HOM05D004959 ORTHO05D005961 7.6e-147 525.8 1117 34.3
RcHm_v2.0_Chr4g0396011 Rosa chinensis HOM05D004959 ORTHO05D005961 7.6e-147 525.8 1101 33.7
FAN22G0965 Fragaria x ananassa HOM05D004959 ORTHO05D005961 8.4e-146 522.3 1073 34.7
Aa31LG6G2470 Aethionema arabicum HOM05D004959 ORTHO05D005961 1.4e-145 521.5 1096 33.9
BolC1t01373H Brassica oleracea HOM05D004959 ORTHO05D005961 4.2e-145 520.0 1098 34.0
AL7G33790 Arabidopsis lyrata HOM05D004959 ORTHO05D005961 9.3e-145 518.8 1101 32.8
Phvul.004G026300 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.2e-144 518.5 1105 33.3
C01p14060 Brassica napus HOM05D004959 ORTHO05D005961 3.5e-144 516.9 1097 33.7
BraA01t01128Z Brassica rapa HOM05D004959 ORTHO05D005961 7.8e-144 515.8 1097 33.6
BcaNung06192 Brassica carinata HOM05D004959 ORTHO05D005961 1.7e-143 514.6 1093 34.2
Eucgr.I01567 Eucalyptus grandis HOM05D004959 ORTHO05D005961 6.6e-143 512.7 1105 32.9
Thhalv10024260m.g Eutrema salsugineum HOM05D004959 ORTHO05D005961 1.5e-142 511.5 1109 32.5
Sc10g0002790 Simmondsia chinensis HOM05D004959 ORTHO05D005961 1.3e-141 508.4 1106 32.5
Carub.0007s2107 Capsella rubella HOM05D004959 ORTHO05D005961 1.6e-141 508.1 1105 33.2
FAN17G1136 Fragaria x ananassa HOM05D004959 ORTHO05D005961 3.6e-141 506.9 1097 33.5
VMungo0464G0163 Vigna mungo HOM05D004959 ORTHO05D005961 4.8e-141 506.5 1099 32.9
MBI07_g42017_MAGBIO Magnolia biondii HOM05D004959 ORTHO05D005961 5.8e-139 499.6 1211 31.7
SGA_v2.0_scaffold36G14263 Striga asiatica HOM05D004959 ORTHO05D005961 8.4e-138 495.7 1081 33.7
A01p11860 Brassica napus HOM05D004959 ORTHO05D005961 1.1e-137 495.4 1097 34.3
CiPaw.10G061900 Carya illinoinensis HOM05D004959 ORTHO05D005961 4.3e-134 483.4 933 35.8
Sp7g18520 Schrenkiella parvula HOM05D004959 ORTHO05D005961 9.0e-132 475.7 1103 32.2
AUR62012329 Chenopodium quinoa HOM05D004959 ORTHO05D005961 9.3e-129 465.7 1102 31.6
EL10Ac2g04300 Beta vulgaris HOM05D004959 ORTHO05D005961 2.1e-128 464.5 1114 31.5
SGA_v2.0_scaffold99G29470 Striga asiatica HOM05D004959 ORTHO05D005961 4.6e-128 463.4 1067 33.5
AUR62022971 Chenopodium quinoa HOM05D004959 ORTHO05D005961 1.8e-127 461.5 1104 31.5
Atru.chr8.666 Acer truncatum HOM05D004959 ORTHO05D005961 1.3e-125 455.3 940 33.7
Ciclev10014195m.g Citrus clementina HOM05D004959 ORTHO05D005961 1.0e-122 445.7 911 33.5
ATR0037G053 Amborella trichopoda HOM05D004959 ORTHO05D005961 9.3e-121 439.1 1158 29.7
Hma1.2p1_0286F.1_g114200 Hydrangea macrophylla HOM05D004959 ORTHO05D005961 4.3e-118 430.3 660 39.7
CSS0032692 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.4e-116 424.5 893 33.8
MD16G1229900 Malus domestica HOM05D004959 ORTHO05D005961 2.9e-114 417.5 979 33.1
Ah.09g226960 Amaranthus hybridus HOM05D004959 ORTHO05D005961 3.0e-111 407.5 1101 31.1
Aqoxy7G01840 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.5e-110 405.2 933 32.9
Glyma.13G054500 Glycine max HOM05D004959 ORTHO05D005961 2.6e-107 394.4 952 31.0
HPP92_024644 Vanilla planifolia HOM05D004959 ORTHO05D005961 3.2e-105 387.5 1146 27.7
Peaxi162Scf00449g00320 Petunia axillaris HOM05D004959 ORTHO05D005961 1.4e-97 362.1 894 30.4
SEGI_31831 Sequoiadendron giganteum HOM05D004959 ORTHO05D005961 1.1e-94 352.4 1211 26.0
Zm00001eb126950 Zea mays HOM05D004959 ORTHO05D005961 2.9e-90 337.8 1170 26.1
SHI28141 Sapria himalayana HOM05D004959 ORTHO05D005961 2.1e-80 305.1 915 28.3
CAN.G370.71 Capsicum annuum HOM05D004959 ORTHO05D005961 3.4e-78 297.7 394 44.4
PSO161G0046 Papaver somniferum HOM05D004959 ORTHO05D005961 3.5e-67 261.2 807 29.2
Oeu021362.1 Olea europaea HOM05D004959 ORTHO05D005961 1.0e-63 249.6 428 36.2
Pp3c21_2460 Physcomitrium patens HOM05D004959 ORTHO05D005961 9.8e-54 216.5 1206 21.8
LjContig00564g0005645 Lotus japonicus HOM05D004959 ORTHO05D005961 4.1e-52 211.1 250 46.0
Mapoly0306s0002 Marchantia polymorpha HOM05D004959 ORTHO05D005961 2.0e-51 208.8 1221 22.9
Lalb_Chr19g0135221 Lupinus albus HOM05D004959 ORTHO05D005961 5.0e-50 204.1 259 43.6
LjContig00564g0002415 Lotus japonicus HOM05D004959 ORTHO05D005961 1.5e-49 202.6 250 44.8
CDE04G1301 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 4.3e-49 201.1 411 32.4
Medtr4g078330 Medicago truncatula HOM05D004959 ORTHO05D005961 4.3e-49 201.1 260 44.6
Psat7g167160 Pisum sativum HOM05D004959 ORTHO05D005961 4.3e-49 201.1 260 45.4
Ca_18944_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 5.2e-47 194.1 250 44.4
Lj3g0004583 Lotus japonicus HOM05D004959 ORTHO05D005961 6.8e-47 193.7 250 48.8
Peaxi162Scf00449g00321 Petunia axillaris HOM05D004959 ORTHO05D005961 4.4e-46 191.0 224 49.1
CSS0018526 Camellia sinensis var. sinensis HOM05D004959 ORTHO05D005961 2.1e-43 182.2 188 56.9
BcaB03g11657 Brassica carinata HOM05D004959 ORTHO05D005961 1.8e-39 169.1 304 37.2
arahy.Tifrunner.gnm1.ann1.C6XSUD Arachis hypogaea HOM05D004959 ORTHO05D005961 1.1e-36 159.8 247 36.4
arahy.Tifrunner.gnm1.ann1.WXF40H Arachis hypogaea HOM05D004959 ORTHO05D005961 1.1e-36 159.8 267 34.1
Atru.chr8.667 Acer truncatum HOM05D004959 ORTHO05D005961 1.0e-34 153.3 126 54.8
Phvul.005G124450 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.3e-33 148.3 121 60.3
LjContig00564g0005363 Lotus japonicus HOM05D004959 ORTHO05D005961 1.4e-31 142.9 122 55.7
CDE04G0396 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 3.1e-31 141.7 188 39.9
PSO478G4754 Papaver somniferum HOM05D004959 ORTHO05D005961 6.9e-31 140.6 124 54.8
unitig_46.g18488 Utricularia gibba HOM05D004959 ORTHO05D005961 1.2e-30 139.8 249 37.8
AagrBONN_evm.TU.Sc2ySwM_228.5373 Anthoceros agrestis HOM05D004959 ORTHO05D005961 2.0e-30 139.0 251 33.5
SMO111G0127 Selaginella moellendorffii HOM05D004959 ORTHO05D005961 3.4e-30 138.3 952 21.6
BcaNung06193 Brassica carinata HOM05D004959 ORTHO05D005961 1.1e-28 133.3 132 49.2
SHI28139 Sapria himalayana HOM05D004959 ORTHO05D005961 1.4e-28 132.9 126 49.2
TPR.G23000 Trifolium pratense HOM05D004959 ORTHO05D005961 2.3e-26 125.6 113 55.8
Aqoxy5G03191 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 6.6e-26 124.0 452 28.1
Phvul.005G124551 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 3.5e-19 101.7 277 31.0
Phvul.005G124501 Phaseolus vulgaris HOM05D004959 ORTHO05D005961 1.1e-17 96.7 286 26.2
Psat2g088000 Pisum sativum HOM05D004959 ORTHO05D005961 1.1e-17 96.7 131 44.3
Ca_14573_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.9e-17 95.9 105 47.6
Ca_14572_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.3e-16 93.2 106 47.2
CBR_g16049 Chara braunii HOM05D004959 ORTHO05D005961 6.2e-16 90.9 269 24.2
CDE04G2317 Ceratophyllum demersum HOM05D004959 ORTHO05D005961 1.8e-15 89.4 392 25.0
Atru.chr10.384 Acer truncatum HOM05D004959 ORTHO05D005961 5.3e-15 87.8 227 26.9
Aqoxy5G03189 Aquilegia oxysepala HOM05D004959 ORTHO05D005961 1.4e-12 79.7 211 28.0
Ca_14567_v3 Cicer arietinum L. HOM05D004959 ORTHO05D005961 1.9e-12 79.3 89 49.4
Os01g0188200 Oryza sativa ssp. japonica HOM05D004959 ORTHO05D005961 7.4e-09 67.4 181 27.1


User provided reference genes

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