Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 7.3e-142 507.3 269 100.0
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 5.0e-127 458.0 269 81.8
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 2.0e-123 446.0 266 82.0
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 2.7e-120 435.6 269 78.4
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 3.0e-119 432.2 268 77.2
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.8e-117 425.6 269 76.6
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 3.6e-117 425.2 268 77.2
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 1.4e-116 423.3 267 77.2
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 1.4e-116 423.3 269 75.1
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 1.4e-116 423.3 269 75.8
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 2.3e-116 422.5 269 76.2
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 3.1e-116 422.2 269 76.2
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 4.0e-116 421.8 269 75.8
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 5.2e-116 421.4 269 75.8
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.2e-115 420.2 269 75.5
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.5e-115 419.9 269 76.2
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.6e-115 419.1 269 74.7
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 2.6e-115 419.1 269 74.3
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 2.6e-115 419.1 269 75.8
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 3.4e-115 418.7 269 74.3
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 3.4e-115 418.7 270 76.3
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 4.4e-115 418.3 269 74.7
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 5.8e-115 417.9 271 75.3
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 5.8e-115 417.9 269 74.0
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 5.8e-115 417.9 269 74.3
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 5.8e-115 417.9 270 75.6
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 5.8e-115 417.9 270 75.6
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 7.6e-115 417.5 269 74.3
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 9.9e-115 417.2 269 75.8
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 1.3e-114 416.8 269 74.3
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 2.2e-114 416.0 269 74.3
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 2.9e-114 415.6 269 74.7
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 2.9e-114 415.6 269 73.6
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 6.4e-114 414.5 269 74.0
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 1.1e-113 413.7 269 76.2
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 1.1e-113 413.7 269 73.2
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.1e-113 413.7 269 73.6
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 2.4e-113 412.5 269 73.2
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.2e-113 412.1 269 79.2
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 3.2e-113 412.1 269 73.2
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 4.1e-113 411.8 269 72.1
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 5.4e-113 411.4 269 73.2
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 5.4e-113 411.4 269 73.2
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 9.2e-113 410.6 271 74.2
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 9.2e-113 410.6 269 73.6
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-112 410.2 269 73.6
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-112 409.8 269 72.9
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.6e-112 409.8 271 74.5
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 2.1e-112 409.5 263 73.8
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 3.5e-112 408.7 269 72.9
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.5e-112 408.7 269 72.5
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 6.0e-112 407.9 269 73.6
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 7.8e-112 407.5 269 72.5
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.8e-112 407.5 269 72.5
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 7.8e-112 407.5 269 73.2
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 1.0e-111 407.1 274 74.5
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 1.0e-111 407.1 306 67.6
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-111 406.0 269 71.7
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 2.3e-111 406.0 269 72.9
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.3e-111 406.0 269 72.9
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.3e-111 406.0 269 72.9
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 3.0e-111 405.6 269 72.1
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 3.0e-111 405.6 269 73.2
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 3.0e-111 405.6 269 72.5
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 3.9e-111 405.2 271 73.4
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 3.9e-111 405.2 269 74.0
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 6.6e-111 404.4 269 71.7
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 8.6e-111 404.1 269 71.4
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 8.6e-111 404.1 269 71.4
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.1e-110 403.7 269 72.1
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.5e-110 403.3 269 71.4
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.5e-110 403.3 269 72.1
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.9e-110 402.9 275 71.3
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-110 402.5 275 71.3
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 3.3e-110 402.1 269 71.4
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-110 401.7 269 71.0
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.3e-110 401.0 275 70.9
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 9.6e-110 400.6 269 71.7
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.2e-109 400.2 267 71.5
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 1.6e-109 399.8 269 71.0
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 2.8e-109 399.1 269 74.3
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 2.8e-109 399.1 268 72.0
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 1.4e-108 396.7 269 71.4
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.4e-108 396.7 281 68.0
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-108 396.7 269 70.6
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 1.4e-108 396.7 268 70.9
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 2.4e-108 396.0 269 69.1
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 4.0e-108 395.2 267 71.5
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 6.9e-108 394.4 269 70.3
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 8.9e-108 394.0 269 72.1
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.5e-107 393.3 270 70.0
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 2.0e-107 392.9 270 70.4
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 2.6e-107 392.5 270 70.4
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 1.3e-106 390.2 270 70.0
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.8e-106 388.7 269 69.1
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.1e-105 387.1 269 68.4
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 5.4e-105 384.8 269 69.1
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 1.2e-104 383.6 266 69.5
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 1.2e-104 383.6 269 70.3
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 1.6e-104 383.3 269 70.6
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 3.5e-104 382.1 286 66.4
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 3.5e-104 382.1 261 68.2
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 4.6e-104 381.7 269 69.1
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 6.0e-104 381.3 269 69.9
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 7.8e-104 380.9 269 67.7
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 1.0e-103 380.6 268 66.8
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.3e-103 379.4 267 68.9
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 8.7e-103 377.5 275 68.7
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 2.5e-102 375.9 269 66.5
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 3.3e-102 375.6 269 69.9
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 2.4e-100 369.4 244 73.4
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 2.4e-100 369.4 269 66.5
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 2.4e-100 369.4 268 64.9
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.1e-100 369.0 269 66.9
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 5.3e-100 368.2 269 69.1
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 9.0e-100 367.5 269 66.2
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 2.6e-99 365.9 252 71.4
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.4e-99 365.5 270 66.7
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 5.8e-99 364.8 269 67.3
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 9.9e-99 364.0 265 66.4
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 2.4e-97 359.4 269 65.4
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.4e-97 358.2 269 65.1
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.2e-96 357.1 269 65.1
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 3.5e-96 355.5 269 65.8
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 3.5e-96 355.5 267 63.7
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.9e-96 354.4 276 62.7
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-95 353.2 270 63.3
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.3e-95 352.8 270 63.3
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.0e-95 352.4 276 61.6
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 8.7e-95 350.9 212 77.8
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 8.7e-95 350.9 270 64.4
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-94 350.5 271 62.0
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.5e-94 350.1 270 62.2
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.5e-94 349.4 269 62.8
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 5.6e-94 348.2 271 61.6
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.6e-94 348.2 271 63.5
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.4e-94 347.8 276 61.6
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 9.6e-94 347.4 218 74.3
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.6e-94 347.4 271 61.6
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 6.9e-92 341.3 272 64.3
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.9e-90 335.1 211 77.7
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.6e-88 330.1 197 79.7
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 6.0e-88 328.2 218 72.0
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 6.0e-88 328.2 270 59.3
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 1.0e-87 327.4 271 59.8
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.0e-87 325.9 249 64.7
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 3.9e-87 325.5 270 59.3
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 1.5e-86 323.6 271 58.3
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 2.2e-82 309.7 187 77.5
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.9e-82 309.3 189 75.1
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 3.2e-81 305.8 295 55.3
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 5.0e-74 282.0 217 64.1
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.1e-73 280.8 269 53.2
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 2.6e-59 233.0 188 61.7
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-53 213.8 133 72.9
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 3.7e-53 212.6 181 60.2
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 4.1e-52 209.1 136 71.3
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 3.8e-50 202.6 270 40.7
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 1.0e-47 194.5 143 67.8
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.5e-46 190.7 271 39.1
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 2.3e-39 166.8 188 52.7
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-34 150.2 138 55.1
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 9.5e-33 144.8 278 34.2
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 1.4e-31 141.0 269 36.8
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 2.3e-31 140.2 88 72.7
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 2.6e-30 136.7 82 78.0
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.8e-29 133.3 77 80.5
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 1.8e-20 104.0 67 64.2
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 3.9e-18 96.3 109 49.5
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 7.3e-17 92.0 70 62.9
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-15 87.0 68 64.7
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 1.3e-13 81.3 65 64.6
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 2.9e-13 80.1 68 57.4
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 1.4e-12 77.8 49 69.4
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 1.4e-12 77.8 49 69.4
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 3.5e-11 73.2 69 53.6
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 6.0e-11 72.4 108 39.8
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 3.9e-10 69.7 60 58.3
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 6.6e-10 68.9 60 56.7
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.0e-07 59.7 40 62.5
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 6.8e-07 58.9 53 56.6


User provided reference genes

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