Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 9.8e-147 523.5 269 100.0
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 5.1e-119 431.4 266 77.1
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 2.8e-117 425.6 269 74.0
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.9e-113 412.9 269 74.3
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 5.4e-113 411.4 269 74.0
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 7.1e-113 411.0 269 73.6
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 6.0e-112 407.9 269 71.4
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 1.0e-111 407.1 269 74.0
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 1.3e-111 406.8 270 73.0
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.3e-111 406.0 269 72.1
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 2.3e-111 406.0 269 71.4
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 6.6e-111 404.4 269 71.7
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 1.1e-110 403.7 269 71.0
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 1.1e-110 403.7 269 70.6
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 1.5e-110 403.3 269 70.6
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 2.5e-110 402.5 269 71.4
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 3.3e-110 402.1 269 71.0
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 4.3e-110 401.7 263 72.2
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 4.3e-110 401.7 268 70.5
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 5.6e-110 401.4 268 71.6
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 7.3e-110 401.0 267 70.8
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 7.3e-110 401.0 270 72.6
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 9.6e-110 400.6 269 70.6
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 1.2e-109 400.2 269 70.6
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 1.6e-109 399.8 269 69.9
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 1.6e-109 399.8 269 70.6
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.1e-109 399.4 269 71.0
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 2.8e-109 399.1 269 70.6
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 3.6e-109 398.7 269 69.5
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.7e-109 398.3 269 69.9
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 4.7e-109 398.3 269 69.5
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 6.2e-109 397.9 269 69.9
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 6.2e-109 397.9 269 70.6
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 8.1e-109 397.5 271 70.1
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 8.1e-109 397.5 269 70.3
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-108 397.1 269 70.3
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 1.1e-108 397.1 269 69.9
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-108 397.1 269 69.9
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.4e-108 396.7 269 71.7
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.8e-108 396.4 269 70.3
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.8e-108 396.4 269 70.3
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 1.8e-108 396.4 270 70.7
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 1.8e-108 396.4 269 70.3
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 2.4e-108 396.0 267 70.4
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 2.4e-108 396.0 269 69.9
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 3.1e-108 395.6 269 70.6
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 3.1e-108 395.6 269 71.0
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 3.1e-108 395.6 269 69.9
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.0e-108 395.2 269 70.3
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 4.0e-108 395.2 269 69.9
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 5.2e-108 394.8 269 69.9
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 5.2e-108 394.8 269 69.5
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 8.9e-108 394.0 269 70.3
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 1.2e-107 393.7 268 70.1
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.5e-107 393.3 271 70.5
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 1.5e-107 393.3 269 68.8
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.0e-107 392.9 269 69.5
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.6e-107 392.5 275 68.7
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 3.4e-107 392.1 274 70.1
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.4e-107 392.1 275 68.7
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.8e-107 391.3 269 68.4
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 5.8e-107 391.3 269 67.3
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 7.6e-107 391.0 269 69.1
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 7.6e-107 391.0 269 69.1
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 9.9e-107 390.6 275 68.4
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.3e-106 390.2 271 69.0
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 1.7e-106 389.8 269 72.5
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 2.2e-106 389.4 269 68.4
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 2.9e-106 389.0 268 69.8
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 3.8e-106 388.7 271 68.3
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 3.8e-106 388.7 269 68.8
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.9e-106 388.3 269 68.4
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 6.4e-106 387.9 269 68.0
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 6.4e-106 387.9 269 68.4
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 8.4e-106 387.5 270 68.9
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 1.1e-105 387.1 269 68.4
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 1.1e-105 387.1 269 67.7
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 1.4e-105 386.7 269 68.8
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 1.4e-105 386.7 270 68.1
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 1.4e-105 386.7 269 67.3
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 1.4e-105 386.7 269 68.4
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 1.4e-105 386.7 269 68.4
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.9e-105 386.3 270 68.5
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 1.9e-105 386.3 306 63.7
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.4e-105 386.0 281 66.2
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 5.4e-105 384.8 269 72.5
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 7.1e-105 384.4 269 72.1
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 7.1e-105 384.4 269 68.8
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 1.2e-104 383.6 269 67.3
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 1.2e-104 383.6 270 68.1
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 1.2e-104 383.6 269 66.9
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 3.5e-104 382.1 269 69.5
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 6.0e-104 381.3 267 67.8
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 6.0e-104 381.3 269 70.3
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 7.8e-104 380.9 269 66.5
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 7.8e-104 380.9 269 66.5
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.7e-103 379.8 269 65.4
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 1.1e-102 377.1 269 66.2
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 2.5e-102 375.9 286 64.7
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 3.3e-102 375.6 267 67.4
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.3e-101 373.6 269 67.7
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 2.8e-101 372.5 269 66.9
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 1.1e-100 370.5 261 65.5
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.3e-100 368.2 269 67.7
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 9.0e-100 367.5 269 66.9
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 9.0e-100 367.5 269 67.3
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 2.0e-99 366.3 268 62.7
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 2.0e-99 366.3 269 68.0
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 3.4e-99 365.5 269 62.5
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.6e-99 364.4 269 68.0
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 1.3e-98 363.6 269 65.8
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.1e-97 360.5 269 67.3
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 3.2e-97 359.0 269 65.8
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 5.4e-97 358.2 266 64.7
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 2.1e-96 356.3 269 62.8
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 2.7e-96 355.9 269 66.5
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 3.5e-96 355.5 252 68.7
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 1.0e-95 354.0 269 64.7
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.0e-95 354.0 270 63.3
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 1.3e-95 353.6 275 64.0
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-95 352.8 244 70.1
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.0e-95 352.4 271 62.4
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 3.0e-95 352.4 268 61.2
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 1.5e-94 350.1 271 62.0
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.5e-94 349.4 271 62.0
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.6e-94 348.2 270 62.2
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.6e-94 348.2 270 62.2
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.4e-94 347.8 276 60.5
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.8e-93 345.9 276 60.5
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 8.1e-93 344.4 269 64.3
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.1e-92 344.0 270 61.1
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.4e-92 343.6 269 61.3
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.8e-92 343.2 267 60.7
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-92 342.8 276 60.1
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 2.2e-90 336.3 269 61.0
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 2.9e-90 335.9 270 60.4
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 1.4e-89 333.6 236 64.8
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.4e-89 333.6 271 61.3
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 5.5e-89 331.6 271 61.3
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 9.3e-89 330.9 270 58.9
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 4.6e-88 328.6 270 58.9
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-86 323.2 267 61.4
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 7.4e-86 321.2 235 66.8
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 3.1e-84 315.8 271 56.8
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.0e-84 315.5 249 61.0
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 7.6e-83 311.2 225 66.2
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 1.5e-78 297.0 211 70.6
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 3.4e-75 285.8 295 50.2
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.2e-73 278.9 197 68.0
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 7.2e-73 278.1 269 53.5
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 3.9e-71 272.3 217 61.8
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.8e-69 266.2 189 65.1
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 3.6e-64 249.2 187 63.1
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 3.0e-55 219.5 141 73.0
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 6.1e-48 195.3 271 38.4
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.6e-46 189.9 181 54.7
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 1.8e-44 183.7 118 72.9
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 1.2e-43 181.0 189 49.7
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 1.6e-43 180.6 188 53.2
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.0e-42 175.6 118 68.6
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 7.2e-41 171.8 271 35.4
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 5.2e-39 165.6 269 39.4
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 7.0e-36 155.2 278 34.9
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 1.3e-29 134.4 88 71.6
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 4.5e-27 125.9 82 73.2
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 1.7e-26 124.0 76 71.1
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 6.6e-26 122.1 94 57.4
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 6.6e-26 122.1 109 57.8
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 7.3e-25 118.6 68 79.4
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.7e-19 100.1 69 66.7
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 4.6e-19 99.4 108 48.1
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 9.2e-12 75.1 67 46.3
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 5.0e-10 69.3 68 52.9
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 6.8e-07 58.9 59 54.2
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 1.2e-06 58.2 59 52.5


User provided reference genes

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