Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 2.1e-45 185.3 88 100.0
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 6.2e-42 173.7 87 95.4
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 1.5e-40 169.1 87 93.1
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 9.3e-38 159.8 87 86.2
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 8.1e-34 146.7 87 80.5
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 9.0e-33 143.3 87 74.7
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 9.0e-33 143.3 87 74.7
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 1.2e-32 142.9 87 75.9
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 2.0e-32 142.1 87 75.9
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 2.6e-32 141.7 87 72.4
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 3.4e-32 141.4 87 72.4
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 4.5e-32 141.0 87 72.4
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 4.5e-32 141.0 87 71.3
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 4.5e-32 141.0 87 74.7
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 5.8e-32 140.6 87 77.0
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 5.8e-32 140.6 87 75.9
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 7.6e-32 140.2 87 72.4
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 7.6e-32 140.2 87 75.9
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 7.6e-32 140.2 87 72.4
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 7.6e-32 140.2 87 73.6
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 9.9e-32 139.8 87 73.6
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 9.9e-32 139.8 87 71.3
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.3e-31 139.4 87 71.3
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.3e-31 139.4 87 71.3
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.7e-31 139.0 87 71.3
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 2.2e-31 138.7 87 74.7
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 2.2e-31 138.7 87 72.4
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.2e-31 138.7 87 72.4
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 2.2e-31 138.7 87 74.7
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 2.2e-31 138.7 87 72.4
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 2.9e-31 138.3 87 71.3
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 2.9e-31 138.3 87 70.1
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 3.8e-31 137.9 87 66.7
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 3.8e-31 137.9 87 73.6
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 4.9e-31 137.5 87 73.6
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 4.9e-31 137.5 87 73.6
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.9e-31 137.5 87 72.4
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 4.9e-31 137.5 87 69.0
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.4e-31 137.1 87 71.3
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 6.4e-31 137.1 87 71.3
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 6.4e-31 137.1 87 70.1
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 6.4e-31 137.1 87 69.0
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 6.4e-31 137.1 87 72.4
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 8.4e-31 136.7 87 69.0
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 8.4e-31 136.7 87 72.4
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.1e-30 136.3 87 67.8
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.1e-30 136.3 87 71.3
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.4e-30 136.0 87 71.3
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.4e-30 136.0 87 65.5
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.9e-30 135.6 87 69.0
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 1.9e-30 135.6 87 70.1
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 1.9e-30 135.6 87 72.4
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.9e-30 135.6 87 71.3
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.9e-30 135.6 87 72.4
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 1.9e-30 135.6 87 72.4
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.5e-30 135.2 87 71.3
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 2.5e-30 135.2 86 72.1
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 2.5e-30 135.2 87 64.4
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.2e-30 134.8 87 70.1
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 4.2e-30 134.4 87 64.4
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 4.2e-30 134.4 87 67.8
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 5.5e-30 134.0 87 66.7
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 5.5e-30 134.0 87 70.1
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 7.1e-30 133.7 87 66.7
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 7.1e-30 133.7 87 70.1
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 9.3e-30 133.3 87 66.7
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.2e-29 132.9 87 67.8
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 1.2e-29 132.9 87 69.0
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.2e-29 132.9 86 73.3
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.2e-29 132.9 87 71.3
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.2e-29 132.9 87 69.0
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.6e-29 132.5 87 67.8
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.1e-29 132.1 87 70.1
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.1e-29 132.1 87 67.8
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 2.1e-29 132.1 87 69.0
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 2.7e-29 131.7 86 69.8
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.7e-29 131.7 87 70.1
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.7e-29 131.7 87 67.8
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 3.5e-29 131.3 87 65.5
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 3.5e-29 131.3 87 69.0
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 4.6e-29 131.0 87 67.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 4.6e-29 131.0 87 65.5
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 4.6e-29 131.0 87 70.1
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 4.6e-29 131.0 87 65.5
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 6.0e-29 130.6 87 65.5
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 6.0e-29 130.6 87 65.5
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 7.9e-29 130.2 87 64.4
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.0e-28 129.8 87 64.4
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 1.0e-28 129.8 87 63.2
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.3e-28 129.4 87 64.4
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.3e-28 129.4 87 69.0
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.3e-28 129.4 87 66.7
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.8e-28 129.0 87 62.1
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.0e-28 128.3 87 64.4
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 5.1e-28 127.5 87 62.1
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 5.1e-28 127.5 87 62.1
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 5.1e-28 127.5 87 62.1
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 5.1e-28 127.5 87 62.1
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 5.1e-28 127.5 87 63.2
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 6.7e-28 127.1 87 66.7
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 6.7e-28 127.1 87 63.2
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 8.7e-28 126.7 87 63.2
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.1e-27 126.3 87 62.1
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.5e-27 125.9 87 62.1
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 1.5e-27 125.9 86 67.4
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.9e-27 125.6 87 66.7
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.9e-27 125.6 87 62.1
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 3.3e-27 124.8 87 70.1
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 4.3e-27 124.4 87 64.4
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 6.2e-26 120.6 87 62.1
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.1e-25 118.2 87 59.8
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 6.9e-25 117.1 87 59.8
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 2.6e-24 115.2 87 57.5
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 3.8e-23 111.3 87 59.8
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 9.3e-22 106.7 87 54.0
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 2.7e-21 105.1 76 60.5
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 2.7e-21 105.1 78 64.1
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 3.9e-20 101.3 59 74.6
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 8.7e-20 100.1 87 49.4
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 1.9e-19 99.0 87 50.6
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 5.7e-19 97.4 87 49.4
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 8.2e-18 93.6 87 51.7
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.1e-17 93.2 87 46.0
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.1e-14 83.2 87 48.3
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 1.4e-14 82.8 87 44.8
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 7.2e-14 80.5 81 49.4
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 2.5e-11 72.0 78 47.4
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 4.3e-11 71.2 75 49.3
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 7.7e-08 60.5 76 38.2
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.3e-07 59.7 87 40.2


User provided reference genes

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