Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.3e-140 503.1 249 100.0
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 1.5e-128 463.0 248 92.3
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 2.8e-124 448.7 250 90.8
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 1.2e-119 433.3 248 84.3
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 3.1e-115 418.7 249 81.1
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 8.0e-111 404.1 250 77.2
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 2.3e-110 402.5 250 76.0
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 3.0e-110 402.1 249 77.1
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.9e-108 394.8 250 74.0
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 1.1e-107 393.7 250 73.6
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.1e-107 393.7 250 74.4
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 3.1e-107 392.1 250 74.0
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 9.2e-107 390.6 250 73.2
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 2.0e-106 389.4 250 74.8
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 3.5e-106 388.7 250 72.0
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 4.5e-106 388.3 250 72.4
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 7.8e-106 387.5 250 74.0
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.0e-105 387.1 250 72.0
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 1.0e-105 387.1 250 72.4
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 1.0e-105 387.1 250 72.4
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 2.3e-105 386.0 250 74.0
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 2.9e-105 385.6 250 73.2
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 3.8e-105 385.2 250 72.8
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 3.8e-105 385.2 251 73.7
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 3.8e-105 385.2 250 72.8
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 8.6e-105 384.0 250 70.8
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 8.6e-105 384.0 250 72.0
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 8.6e-105 384.0 250 71.2
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 1.1e-104 383.6 250 72.0
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.5e-104 383.3 250 73.6
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 1.5e-104 383.3 250 74.0
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 3.3e-104 382.1 250 70.8
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 3.3e-104 382.1 250 72.0
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 7.3e-104 380.9 250 71.6
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 7.3e-104 380.9 250 73.2
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 7.3e-104 380.9 250 72.8
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.5e-104 380.6 250 70.8
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 1.2e-103 380.2 250 70.4
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.2e-103 380.2 250 70.8
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 1.6e-103 379.8 250 70.8
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 2.8e-103 379.0 250 71.6
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 6.1e-103 377.9 250 71.6
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 8.0e-103 377.5 250 72.0
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.0e-102 375.6 250 71.2
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 5.2e-102 374.8 250 68.8
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 5.2e-102 374.8 250 71.6
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 6.8e-102 374.4 250 70.8
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 8.9e-102 374.0 250 70.8
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 8.9e-102 374.0 250 72.4
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 1.5e-101 373.2 250 70.8
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 3.4e-101 372.1 250 68.8
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 3.4e-101 372.1 250 71.6
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 3.4e-101 372.1 250 68.8
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 4.4e-101 371.7 250 69.2
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 5.7e-101 371.3 250 70.8
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 7.5e-101 370.9 250 68.4
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 7.5e-101 370.9 250 68.4
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 9.8e-101 370.5 250 69.6
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 1.7e-100 369.8 249 68.3
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 1.7e-100 369.8 250 68.0
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 2.2e-100 369.4 250 69.2
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 4.9e-100 368.2 250 70.4
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 8.3e-100 367.5 250 67.2
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 2.4e-99 365.9 250 69.2
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 3.2e-99 365.5 249 68.7
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 3.2e-99 365.5 250 70.0
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 5.4e-99 364.8 251 70.1
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 7.0e-99 364.4 250 70.0
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 7.0e-99 364.4 250 71.6
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 9.2e-99 364.0 250 70.0
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 1.6e-98 363.2 250 66.8
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.3e-97 360.1 250 68.0
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 2.3e-97 359.4 242 71.1
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 3.0e-97 359.0 250 68.0
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 3.0e-97 359.0 253 69.2
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 3.0e-97 359.0 250 71.2
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 3.9e-97 358.6 252 67.9
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 5.0e-97 358.2 250 68.8
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 1.1e-96 357.1 250 66.4
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 9.5e-96 354.0 249 67.1
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 2.8e-95 352.4 250 65.6
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 4.7e-95 351.7 249 65.1
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 4.7e-95 351.7 250 67.6
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 6.2e-95 351.3 249 65.5
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 8.0e-95 350.9 250 69.6
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.1e-94 350.5 249 65.5
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 1.4e-94 350.1 249 65.1
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 3.1e-94 349.0 250 66.0
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 5.2e-94 348.2 249 65.5
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.0e-93 346.3 249 65.1
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 2.0e-93 346.3 250 66.0
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 4.4e-93 345.1 249 63.9
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 1.7e-92 343.2 249 63.9
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 1.7e-92 343.2 249 63.5
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 6.4e-92 341.3 249 63.9
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 6.4e-92 341.3 249 63.9
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 6.4e-92 341.3 249 63.9
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 9.2e-91 337.4 251 64.9
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 9.2e-91 337.4 248 64.9
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 1.6e-90 336.7 253 64.8
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 1.0e-89 334.0 250 63.6
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 5.0e-89 331.6 251 62.5
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 9.5e-88 327.4 252 63.1
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 6.2e-87 324.7 248 62.5
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.1e-86 323.9 215 70.7
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 3.1e-86 322.4 249 61.4
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 5.8e-85 318.2 250 62.0
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 7.1e-83 311.2 250 60.8
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 2.7e-82 309.3 252 61.1
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 4.0e-78 295.4 248 60.1
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 4.4e-77 292.0 196 69.4
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 5.8e-77 291.6 248 55.2
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 5.1e-73 278.5 250 55.2
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 1.1e-72 277.3 250 57.6
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.8e-70 270.0 252 52.4
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 2.1e-66 256.5 248 48.8
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 3.6e-63 245.7 147 78.2
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 9.9e-61 237.7 248 53.6
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 2.2e-60 236.5 247 47.8
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.7e-52 210.3 198 54.5
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.2e-51 206.1 151 63.6
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 7.4e-48 194.9 136 68.4
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 6.2e-47 191.8 253 41.5
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 6.9e-46 188.3 155 63.9
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 5.8e-45 185.3 124 70.2
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 5.8e-45 185.3 236 45.8
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 2.2e-44 183.3 168 54.8
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 7.4e-40 168.3 320 34.4
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 6.3e-39 165.2 269 38.3
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 1.1e-35 154.5 351 31.3
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 6.7e-33 145.2 102 68.6
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.9e-32 143.7 102 67.6
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 2.0e-29 133.7 121 57.9
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 5.5e-27 125.6 232 34.9
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 1.2e-26 124.4 80 68.8
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 4.8e-23 112.5 85 64.7
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 7.2e-19 98.6 90 56.7
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 2.0e-16 90.5 68 67.6
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 2.6e-16 90.1 58 75.9
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 4.0e-09 66.2 56 53.6
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 1.1e-06 58.2 31 80.6


User provided reference genes

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