Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 4.4e-180 634.4 302 100.0
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 1.4e-133 479.9 275 79.3
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 2.2e-123 446.0 302 68.5
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.0e-120 435.6 302 66.2
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 5.1e-120 434.9 303 65.7
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 1.1e-119 433.7 303 66.3
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.3e-119 431.8 302 65.6
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 7.4e-119 431.0 300 66.7
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 7.4e-119 431.0 301 64.8
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 7.4e-119 431.0 301 64.8
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 1.7e-118 429.9 276 69.2
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 2.8e-118 429.1 302 66.9
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 3.7e-118 428.7 302 66.9
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 8.2e-118 427.6 302 65.2
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 1.8e-117 426.4 302 66.2
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 5.3e-117 424.9 303 64.7
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 6.9e-117 424.5 302 65.2
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 9.1e-117 424.1 303 66.0
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 1.5e-116 423.3 306 62.7
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 4.5e-116 421.8 301 65.4
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 2.9e-115 419.1 304 63.8
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 5.0e-115 418.3 302 64.6
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 1.4e-114 416.8 305 63.0
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.4e-114 416.8 302 64.6
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 2.5e-114 416.0 302 65.2
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 1.2e-113 413.7 304 63.2
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 2.1e-113 412.9 304 62.2
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 2.1e-113 412.9 272 68.0
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 6.1e-113 411.4 274 69.7
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 7.9e-113 411.0 279 65.9
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 2.3e-112 409.5 277 67.9
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.3e-112 409.5 301 63.1
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 5.1e-112 408.3 270 68.1
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 8.8e-112 407.5 301 62.8
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.5e-111 406.8 302 62.6
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 3.3e-111 405.6 301 63.1
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.3e-111 405.6 301 62.1
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.3e-111 405.6 301 62.5
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 5.7e-111 404.8 245 75.9
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 5.7e-111 404.8 301 62.5
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 1.3e-110 403.7 312 61.9
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 1.7e-110 403.3 305 62.0
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 2.8e-110 402.5 302 62.3
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 1.1e-109 400.6 304 60.5
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.8e-109 399.8 302 61.9
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 2.4e-109 399.4 302 61.9
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 7.0e-109 397.9 272 64.7
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.5e-108 396.7 302 61.6
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 1.0e-107 394.0 312 60.6
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 1.3e-107 393.7 303 59.7
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 3.8e-107 392.1 290 61.7
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 8.5e-107 391.0 275 66.5
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 1.5e-106 390.2 304 59.9
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 3.2e-106 389.0 280 66.4
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 2.7e-105 386.0 270 63.7
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.0e-104 384.0 303 60.1
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 1.4e-104 383.6 302 60.9
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 6.7e-104 381.3 303 59.4
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 1.1e-103 380.6 303 59.7
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 4.4e-103 378.6 273 61.9
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 1.3e-102 377.1 282 64.2
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 2.2e-102 376.3 298 57.4
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.2e-102 376.3 298 57.7
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 2.8e-102 375.9 297 57.9
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 2.8e-102 375.9 301 56.5
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 2.8e-102 375.9 306 58.2
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 4.8e-102 375.2 320 56.9
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.4e-101 373.6 301 55.8
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 1.4e-101 373.6 278 62.2
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 9.1e-101 370.9 322 56.8
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 2.0e-100 369.8 298 57.0
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 1.3e-99 367.1 304 55.3
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 1.9e-98 363.2 301 55.5
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 5.5e-98 361.7 301 55.1
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 1.2e-97 360.5 300 56.3
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 4.7e-97 358.6 263 62.4
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 8.0e-97 357.8 302 57.9
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 6.8e-96 354.8 307 56.4
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 2.2e-94 349.7 280 57.9
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 3.7e-94 349.0 318 54.4
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 1.1e-93 347.4 308 56.5
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 4.5e-92 342.0 284 58.8
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 7.7e-92 341.3 270 60.0
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 6.8e-88 328.2 239 63.2
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.5e-87 327.0 272 55.5
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.6e-84 317.0 294 52.4
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 1.1e-82 310.8 316 49.4
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 3.0e-80 302.8 212 64.2
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 2.6e-79 299.7 339 47.2
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 3.7e-78 295.8 302 48.0
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.2e-77 292.7 275 50.9
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.2e-77 292.7 272 51.5
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 3.2e-77 292.7 232 58.2
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 3.5e-76 289.3 216 58.3
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 4.3e-74 282.3 319 48.3
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 8.0e-73 278.1 190 66.3
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 4.0e-72 275.8 190 65.3
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 5.2e-72 275.4 280 50.4
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 7.5e-71 271.6 189 62.4
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 9.8e-71 271.2 277 50.2
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 3.7e-70 269.2 254 51.6
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 2.4e-69 266.5 275 46.9
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 4.1e-69 265.8 178 65.2
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 3.9e-67 259.2 171 74.9
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 9.2e-61 238.0 247 44.1
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 1.3e-59 234.2 311 42.8
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 2.5e-58 229.9 273 44.0
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.2e-57 227.6 185 61.1
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.1e-56 224.6 188 59.6
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 1.4e-56 224.2 309 41.1
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 2.3e-56 223.4 192 57.8
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 3.4e-55 219.5 190 54.7
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 4.4e-55 219.2 190 54.7
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 1.2e-52 211.1 281 39.9
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.6e-49 200.7 325 33.8
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 3.6e-49 199.5 317 33.8
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 3.6e-49 199.5 283 38.5
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 1.2e-47 194.5 206 48.1
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 5.8e-47 192.2 135 67.4
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 1.1e-45 188.0 276 37.7
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 4.2e-45 186.0 221 45.2
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 6.6e-43 178.7 126 63.5
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 8.1e-41 171.8 119 64.7
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.4e-40 171.0 117 63.2
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 9.0e-40 168.3 256 36.7
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.3e-38 164.5 299 33.4
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 2.4e-37 160.2 119 58.0
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 4.8e-33 146.0 123 53.7
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 9.0e-32 141.7 119 50.4
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 1.5e-31 141.0 169 43.2
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 7.6e-31 138.7 113 56.6
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 2.9e-30 136.7 101 66.3
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 1.9e-26 124.0 112 57.1
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 1.9e-26 124.0 96 62.5
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 9.3e-21 105.1 142 40.8
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 6.0e-20 102.4 76 56.6
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 3.9e-19 99.8 62 66.1
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 9.6e-18 95.1 73 61.6
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.1e-17 94.0 64 65.6
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 6.3e-17 92.4 180 35.0
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 4.5e-15 86.3 65 63.1
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 4.5e-15 86.3 62 67.7
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 1.0e-11 75.1 53 54.7
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 6.7e-11 72.4 102 37.3
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 1.6e-09 67.8 86 41.9
MD07G1149100 Malus domestica HOM05D000590 ORTHO05D006825 1.2e-07 61.6 42 64.3
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 4.5e-07 59.7 56 50.0


User provided reference genes

Program Settings