Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 2.1e-115 419.1 213 100.0
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 4.0e-111 404.8 212 97.2
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 2.5e-81 305.8 208 73.1
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 2.7e-75 285.8 208 68.8
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 1.6e-67 260.0 208 63.0
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 2.5e-65 252.7 212 60.8
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 4.3e-65 251.9 208 61.1
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.3e-64 250.4 208 63.5
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.2e-64 249.6 208 60.6
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 2.8e-64 249.2 208 61.5
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 2.8e-64 249.2 208 59.6
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 6.3e-64 248.1 208 62.0
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 3.1e-63 245.7 208 57.2
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 6.9e-63 244.6 208 60.1
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 1.5e-62 243.4 208 59.6
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 1.5e-62 243.4 205 57.6
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 1.7e-61 240.0 208 59.1
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 3.8e-61 238.8 208 56.7
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 8.5e-61 237.7 208 60.1
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.4e-60 236.9 209 59.3
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.5e-60 236.1 208 58.7
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 2.5e-60 236.1 210 55.7
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 7.2e-60 234.6 208 57.2
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 7.2e-60 234.6 208 57.2
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 7.2e-60 234.6 208 58.7
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 9.4e-60 234.2 208 58.2
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 1.2e-59 233.8 208 57.2
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 1.2e-59 233.8 208 58.7
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 1.2e-59 233.8 208 58.7
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 2.1e-59 233.0 212 55.7
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 3.6e-59 232.3 211 57.3
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.6e-59 232.3 208 57.2
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 3.6e-59 232.3 208 58.2
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 4.7e-59 231.9 208 58.2
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 7.9e-59 231.1 208 55.8
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 2.3e-58 229.6 208 55.3
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 2.3e-58 229.6 208 59.1
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 2.3e-58 229.6 208 58.7
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 3.9e-58 228.8 208 57.2
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 3.9e-58 228.8 208 55.3
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 6.7e-58 228.0 208 56.7
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 6.7e-58 228.0 208 52.4
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 7.4e-57 224.6 213 54.5
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 9.7e-57 224.2 209 56.0
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 1.7e-56 223.4 208 56.7
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 1.7e-56 223.4 208 54.8
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 2.2e-56 223.0 208 55.8
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 2.2e-56 223.0 208 55.3
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 2.2e-56 223.0 209 54.1
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 2.8e-56 222.6 219 53.4
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 3.7e-56 222.2 213 54.5
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 4.8e-56 221.9 209 54.5
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 6.3e-56 221.5 237 50.2
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.4e-55 220.3 208 55.3
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 2.4e-55 219.5 208 56.2
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 3.1e-55 219.2 208 53.8
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 7.0e-55 218.0 208 57.2
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 7.0e-55 218.0 237 50.6
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 9.1e-55 217.6 212 55.2
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 1.2e-54 217.2 209 54.1
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 1.6e-54 216.9 208 55.8
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 2.6e-54 216.1 208 53.4
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 4.5e-54 215.3 211 52.1
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 5.9e-54 214.9 213 53.1
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 5.9e-54 214.9 212 53.3
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 5.9e-54 214.9 212 53.3
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 1.0e-53 214.2 212 53.3
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.0e-53 214.2 208 51.0
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 1.3e-53 213.8 208 53.4
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.7e-53 213.4 212 53.3
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 1.7e-53 213.4 212 52.4
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 1.1e-52 210.7 212 53.3
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 1.9e-52 209.9 211 51.2
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 4.2e-52 208.8 212 53.3
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 4.2e-52 208.8 201 56.2
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 7.2e-52 208.0 212 53.3
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 1.6e-51 206.8 211 49.3
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.7e-51 206.1 208 55.3
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 6.1e-51 204.9 209 51.7
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 8.0e-51 204.5 212 52.8
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 1.4e-50 203.8 212 52.4
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 2.3e-50 203.0 212 52.4
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 3.0e-50 202.6 213 52.1
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 6.7e-50 201.4 209 47.8
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 8.8e-50 201.1 212 51.4
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 8.8e-50 201.1 212 51.4
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.5e-49 200.3 212 53.8
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 1.5e-49 200.3 212 51.9
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 3.3e-49 199.1 212 46.2
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 4.4e-49 198.7 212 53.3
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 4.4e-49 198.7 208 48.1
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 4.4e-49 198.7 206 51.9
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 9.7e-49 197.6 209 52.2
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 1.3e-48 197.2 212 47.6
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 3.7e-48 195.7 213 52.1
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.6e-46 190.3 212 50.5
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 8.5e-45 184.5 211 47.9
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.1e-44 184.1 184 54.9
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.1e-43 179.9 212 47.2
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 1.0e-42 177.6 166 56.0
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 8.8e-42 174.5 185 47.0
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 3.5e-38 162.5 213 43.2
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 1.6e-27 127.1 152 48.7
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 7.5e-25 118.2 217 31.3
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 8.3e-24 114.8 217 37.8
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 5.4e-23 112.1 108 51.9
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 4.6e-22 109.0 119 50.4
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 4.6e-22 109.0 119 50.4
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.5e-20 104.0 70 68.6
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 5.6e-20 102.1 208 36.1
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 1.2e-11 74.3 83 45.8
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.2e-11 74.3 58 58.6
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 8.9e-10 68.2 76 44.7
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 3.4e-09 66.2 80 43.8
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 9.8e-09 64.7 129 35.7
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 3.7e-08 62.8 58 53.4
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 7.1e-07 58.5 193 25.4


User provided reference genes

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