Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0119771 Helianthus annuus HOM05D008452 ORTHO05D010294 7.2e-84 313.9 165 100.0
HanXRQChr13g0403321 Helianthus annuus HOM05D008452 ORTHO05D010294 1.8e-82 309.3 164 98.8
HanXRQChr03g0077561 Helianthus annuus HOM05D008452 ORTHO05D010294 1.8e-74 282.7 145 100.0
HanXRQChr11g0349201 Helianthus annuus HOM05D008452 ORTHO05D010294 1.8e-74 282.7 145 100.0
HanXRQChr17g0547341 Helianthus annuus HOM05D008452 ORTHO05D010294 1.8e-74 282.7 145 100.0
HanXRQChr05g0158771 Helianthus annuus HOM05D008452 ORTHO05D010294 1.2e-73 280.0 145 99.3
HanXRQChr01g0011531 Helianthus annuus HOM05D008452 ORTHO05D010294 1.2e-70 270.0 143 97.2
HanXRQChr03g0067131 Helianthus annuus HOM05D008452 ORTHO05D010294 3.3e-52 208.8 113 100.0
HanXRQChr09g0243031 Helianthus annuus HOM05D008452 ORTHO05D010294 6.2e-35 151.4 71 100.0
HanXRQChr09g0253301 Helianthus annuus HOM05D008452 ORTHO05D010294 6.2e-35 151.4 71 100.0
HanXRQChr10g0300491 Helianthus annuus HOM05D008452 ORTHO05D010294 6.2e-35 151.4 71 100.0
HanXRQChr13g0402781 Helianthus annuus HOM05D008452 ORTHO05D010294 6.2e-35 151.4 71 100.0
HanXRQChr13g0402791 Helianthus annuus HOM05D008452 ORTHO05D010294 3.8e-32 142.1 82 98.8
Lsat_1_v5_gn_3_84721 Lactuca sativa HOM05D008452 ORTHO05D010294 4.3e-20 102.1 149 41.6
Lsat_1_v5_gn_5_25601 Lactuca sativa HOM05D008452 ORTHO05D010294 4.8e-19 98.6 108 45.4
HanXRQChr17g0556091 Helianthus annuus HOM05D008452 ORTHO05D010294 6.2e-19 98.2 75 81.3
Lsat_1_v5_gn_1_8180 Lactuca sativa HOM05D008452 ORTHO05D010294 4.0e-18 95.5 145 40.0
Lsat_1_v5_gn_8_116720 Lactuca sativa HOM05D008452 ORTHO05D010294 2.6e-17 92.8 79 58.2
Lsat_1_v5_gn_8_10480 Lactuca sativa HOM05D008452 ORTHO05D010294 1.3e-16 90.5 155 39.4
Lsat_1_v5_gn_3_12080 Lactuca sativa HOM05D008452 ORTHO05D010294 7.1e-15 84.7 67 58.2
Lsat_1_v5_gn_9_54600 Lactuca sativa HOM05D008452 ORTHO05D010294 1.8e-13 80.1 145 38.6
PSO210G5528 Papaver somniferum HOM05D010879 ORTHO05D010294 3.9e-13 79.0 106 40.6
Lsat_1_v5_gn_9_89720 Lactuca sativa HOM05D008452 ORTHO05D010294 2.8e-11 72.8 137 38.7
PSO017G7209 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO063G2271 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO210G4529 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO223G0075 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO339G0939 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO339G6517 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO384G2643 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO423G0281 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO528G0157 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 147 34.0
PSO675G7919 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO675G8923 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO724G0648 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO761G0148 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO781G0306 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO832G0405 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
PSO832G1619 Papaver somniferum HOM05D010879 ORTHO05D010294 1.8e-10 70.1 95 38.9
RcHm_v2.0_Chr2g0112301 Rosa chinensis HOM05D000539 ORTHO05D000233 2.6e-09 66.2 78 43.6
Rhsim10G0157200 Rhododendron simsii HOM05D000107 ORTHO05D000062 8.4e-08 61.2 78 46.2
RcHm_v2.0_Chr5g0072991 Rosa chinensis HOM05D000539 ORTHO05D000592 8.4e-08 61.2 86 39.5
RcHm_v2.0_Chr6g0272451 Rosa chinensis HOM05D000539 ORTHO05D000592 8.4e-08 61.2 95 36.8
FvH4_6g32742 Fragaria vesca HOM05D000539 ORTHO05D000233 1.1e-07 60.8 82 40.2
FAN28G1329 Fragaria x ananassa HOM05D000723 ORTHO05D001760 1.1e-07 60.8 78 41.0
Lj2g0002143 Lotus japonicus HOM05D002644 ORTHO05D003267 1.1e-07 60.8 150 33.3
FvH4_1g20221 Fragaria vesca HOM05D000539 ORTHO05D000233 1.4e-07 60.5 78 42.3
FvH4_6g31293 Fragaria vesca HOM05D000539 ORTHO05D000233 1.9e-07 60.1 113 33.6
FAN23G1195 Fragaria x ananassa HOM05D000723 ORTHO05D001760 1.9e-07 60.1 78 41.0
RcHm_v2.0_Chr4g0390571 Rosa chinensis HOM05D000539 ORTHO05D000592 1.9e-07 60.1 81 45.7
FvH4_3g23522 Fragaria vesca HOM05D000539 ORTHO05D000233 2.5e-07 59.7 103 35.9
RcHm_v2.0_Chr2g0114971 Rosa chinensis HOM05D000539 ORTHO05D000592 2.5e-07 59.7 84 41.7
TPR.G687 Trifolium pratense HOM05D007793 ORTHO05D010104 2.5e-07 59.7 76 42.1
FAN12G1860 Fragaria x ananassa HOM05D000539 ORTHO05D000592 3.2e-07 59.3 112 33.9
RcHm_v2.0_Chr4g0395771 Rosa chinensis HOM05D000539 ORTHO05D000592 3.2e-07 59.3 84 39.3
RcHm_v2.0_Chr7g0227321 Rosa chinensis HOM05D000539 ORTHO05D000233 3.2e-07 59.3 77 41.6
RcHm_v2.0_Chr1g0364031 Rosa chinensis HOM05D000539 ORTHO05D000233 4.2e-07 58.9 85 42.4
PSO675G4514 Papaver somniferum HOM05D010879 ORTHO05D010294 5.5e-07 58.5 161 28.6
PSO782G4622 Papaver somniferum HOM05D010879 ORTHO05D010294 5.5e-07 58.5 107 33.6
Rhsim02G0146100 Rhododendron simsii HOM05D000539 ORTHO05D000233 5.5e-07 58.5 78 43.6
RcHm_v2.0_Chr2g0095181 Rosa chinensis HOM05D000539 ORTHO05D000233 5.5e-07 58.5 143 31.5
RcHm_v2.0_Chr2g0160781 Rosa chinensis HOM05D000539 ORTHO05D010294 5.5e-07 58.5 77 40.3
RcHm_v2.0_Chr7g0191841 Rosa chinensis HOM05D000539 ORTHO05D000233 5.5e-07 58.5 77 40.3
RcHm_v2.0_Chr7g0196691 Rosa chinensis HOM05D000539 ORTHO05D000233 5.5e-07 58.5 77 40.3
TPR.G11532 Trifolium pratense HOM05D007793 ORTHO05D010104 7.1e-07 58.2 77 37.7
Psat5g276440 Pisum sativum HOM05D007793 ORTHO05D000636 1.2e-06 57.4 77 37.7
RcHm_v2.0_Chr1g0318231 Rosa chinensis HOM05D000539 ORTHO05D000233 1.6e-06 57.0 127 35.4
RcHm_v2.0_Chr3g0482291 Rosa chinensis HOM05D000539 ORTHO05D000592 2.1e-06 56.6 127 33.9
RcHm_v2.0_Chr7g0240601 Rosa chinensis HOM05D000539 ORTHO05D000592 2.1e-06 56.6 127 33.9
FvH4_1g20121 Fragaria vesca HOM05D000539 ORTHO05D000233 2.7e-06 56.2 82 41.5
MBI11_g23345_MAGBIO Magnolia biondii HOM05D009042 ORTHO05D003170 2.7e-06 56.2 77 41.6
RcHm_v2.0_Chr7g0235651 Rosa chinensis HOM05D000539 ORTHO05D000233 2.7e-06 56.2 82 45.1
RcHm_v2.0_Chr2g0102071 Rosa chinensis HOM05D000539 ORTHO05D000592 3.5e-06 55.8 147 36.7
RcHm_v2.0_Chr3g0460901 Rosa chinensis HOM05D000539 ORTHO05D000233 3.5e-06 55.8 78 41.0
RcHm_v2.0_Chr3g0495531 Rosa chinensis HOM05D000539 ORTHO05D000592 3.5e-06 55.8 80 41.2
PSO700G0133 Papaver somniferum HOM05D010375 ORTHO05D015177 4.6e-06 55.5 75 42.7
Rhsim01G0018900 Rhododendron simsii HOM05D000539 ORTHO05D000233 4.6e-06 55.5 77 42.9
RcHm_v2.0_Chr1g0352291 Rosa chinensis HOM05D000539 ORTHO05D000233 4.6e-06 55.5 97 36.1
RcHm_v2.0_Chr2g0140381 Rosa chinensis HOM05D000539 ORTHO05D000592 4.6e-06 55.5 80 42.5
RcHm_v2.0_Chr4g0407991 Rosa chinensis HOM05D000539 ORTHO05D000233 6.0e-06 55.1 165 33.3
FvH4_4g05701 Fragaria vesca HOM05D000539 ORTHO05D000233 7.9e-06 54.7 113 31.9


User provided reference genes

Program Settings