Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.9e-119 432.6 222 100.0
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 1.6e-110 402.9 222 91.0
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 1.6e-107 392.9 222 89.2
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 7.9e-94 347.4 224 78.6
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 6.7e-93 344.4 227 77.5
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 8.8e-93 344.0 223 77.6
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.0e-92 342.8 223 78.5
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.2e-91 339.3 222 77.5
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.3e-91 337.8 223 76.2
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.1e-90 337.0 222 78.8
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.8e-90 336.3 223 76.7
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.4e-90 335.9 223 75.8
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 3.1e-90 335.5 223 78.0
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 6.9e-90 334.3 222 77.9
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 9.1e-90 334.0 223 75.8
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.2e-89 333.6 223 75.8
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 2.0e-89 332.8 222 75.7
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 2.6e-89 332.4 222 75.2
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.6e-89 332.4 222 74.3
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 2.6e-89 332.4 222 74.3
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-89 332.4 224 74.1
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-89 332.4 224 74.1
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 1.7e-88 329.7 223 74.0
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 8.5e-88 327.4 222 74.8
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 2.5e-87 325.9 223 72.6
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 2.5e-87 325.9 223 72.6
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 3.2e-87 325.5 224 74.6
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 5.5e-87 324.7 222 70.7
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 9.4e-87 323.9 223 74.9
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 2.1e-86 322.8 224 71.9
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 2.1e-86 322.8 223 74.9
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 2.7e-86 322.4 222 72.1
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 6.1e-86 321.2 222 71.2
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 6.1e-86 321.2 222 73.9
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 7.9e-86 320.9 222 73.4
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 1.0e-85 320.5 223 70.9
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-85 320.1 223 73.5
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.4e-85 320.1 222 73.0
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.4e-85 320.1 222 72.5
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 2.3e-85 319.3 222 72.5
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 2.3e-85 319.3 222 72.5
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 3.0e-85 318.9 223 71.7
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 3.0e-85 318.9 222 72.5
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 3.0e-85 318.9 223 73.1
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 3.9e-85 318.5 222 72.5
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 3.9e-85 318.5 222 73.0
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 3.9e-85 318.5 222 73.0
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 3.9e-85 318.5 223 74.0
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 3.9e-85 318.5 223 73.1
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 3.9e-85 318.5 223 73.5
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 3.9e-85 318.5 223 73.1
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 5.1e-85 318.2 223 70.9
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 6.7e-85 317.8 223 73.5
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 6.7e-85 317.8 224 73.2
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 6.7e-85 317.8 223 70.4
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 6.7e-85 317.8 223 70.4
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 8.8e-85 317.4 224 72.3
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.1e-84 317.0 223 73.1
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 2.0e-84 316.2 221 72.9
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 2.0e-84 316.2 224 72.8
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 2.0e-84 316.2 223 72.6
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 2.0e-84 316.2 224 73.2
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 4.4e-84 315.1 222 72.1
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 4.4e-84 315.1 223 70.9
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 5.7e-84 314.7 241 67.2
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 5.7e-84 314.7 222 73.0
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 7.4e-84 314.3 222 71.6
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 9.7e-84 313.9 222 71.6
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 9.7e-84 313.9 223 72.2
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.3e-83 313.5 223 73.1
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.3e-83 313.5 241 67.2
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 1.3e-83 313.5 223 71.3
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 1.3e-83 313.5 222 70.7
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.7e-83 313.2 223 72.2
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 2.2e-83 312.8 223 70.4
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.8e-83 312.4 223 71.7
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 3.7e-83 312.0 223 71.3
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 3.7e-83 312.0 222 71.2
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 3.7e-83 312.0 222 70.3
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 6.3e-83 311.2 222 71.6
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 6.3e-83 311.2 223 71.7
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 6.3e-83 311.2 223 71.3
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 8.2e-83 310.8 240 65.4
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.4e-82 310.1 222 72.5
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.1e-82 308.9 223 72.6
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 5.3e-82 308.1 225 71.1
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 5.3e-82 308.1 222 72.5
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 9.1e-82 307.4 224 71.9
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 1.2e-81 307.0 222 72.1
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.6e-81 306.6 223 69.1
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 2.6e-81 305.8 223 71.3
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 7.7e-81 304.3 267 62.5
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 7.7e-81 304.3 223 69.5
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.0e-80 303.9 225 69.3
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 2.2e-80 302.8 223 69.5
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 2.2e-80 302.8 223 69.5
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 2.9e-80 302.4 223 70.4
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 3.8e-80 302.0 223 66.8
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 5.0e-80 301.6 223 70.4
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 6.5e-80 301.2 223 69.5
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 1.1e-79 300.4 222 69.8
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.2e-78 297.0 218 70.6
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.6e-78 296.6 215 69.8
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.6e-78 296.6 223 68.6
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.4e-77 293.5 223 65.5
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 1.8e-77 293.1 221 67.9
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 3.0e-77 292.4 219 68.0
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-74 283.5 223 65.5
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-74 283.5 223 65.5
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 1.4e-74 283.5 188 75.0
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.7e-73 279.3 246 61.0
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 3.8e-72 275.4 193 70.5
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 7.2e-71 271.2 222 57.7
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.0e-69 265.8 176 76.1
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 6.3e-67 258.1 200 65.0
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 7.0e-66 254.6 223 58.3
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.5e-63 246.9 176 70.5
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.5e-63 246.9 145 83.4
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 5.5e-63 245.0 188 64.4
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 7.2e-63 244.6 223 55.2
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 1.2e-62 243.8 223 61.9
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.4e-61 240.4 223 54.3
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 3.0e-61 239.2 224 55.8
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.2e-59 233.0 145 77.2
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 8.3e-59 231.1 166 68.1
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 1.0e-56 224.2 191 58.1
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 6.6e-56 221.5 223 52.9
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.3e-55 219.2 216 56.5
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 5.6e-55 218.4 225 51.6
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 3.6e-54 215.7 166 65.7
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 1.0e-53 214.2 225 52.9
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 5.9e-49 198.4 143 64.3
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 9.5e-47 191.0 149 63.1
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.1e-45 186.0 135 66.7
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 3.6e-38 162.5 181 50.3
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 4.1e-34 149.1 92 80.4
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.2e-33 147.5 106 71.7
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 3.9e-32 142.5 105 65.7
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.1e-29 134.4 234 36.3
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 8.9e-29 131.3 92 66.3
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 1.2e-28 131.0 198 37.9
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 3.8e-27 125.9 99 57.6
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 3.1e-21 106.3 171 32.7
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 5.4e-18 95.5 81 63.0
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 7.8e-17 91.7 86 58.1
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 2.8e-14 83.2 57 71.9
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 4.0e-13 79.3 71 60.6
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 4.6e-09 65.9 92 45.7
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 4.3e-07 59.3 42 64.3
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 5.6e-07 58.9 51 58.8
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 6.2e-06 55.5 51 54.9
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 6.2e-06 55.5 51 54.9


User provided reference genes

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