Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 3231.4 1673 100.0
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2653.2 1683 81.0
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2576.6 1705 77.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2333.5 1708 71.2
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2284.2 1696 69.7
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2273.8 1709 69.5
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2264.6 1702 69.4
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2259.2 1710 69.2
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2259.2 1701 68.7
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2246.5 1703 68.5
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2232.2 1701 68.3
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2229.5 1713 68.1
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2224.9 1704 67.5
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2220.7 1706 68.7
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2214.5 1707 67.3
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2208.7 1706 67.7
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2207.2 1707 67.5
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2206.0 1704 67.2
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2205.6 1707 67.4
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2204.1 1489 72.9
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2193.7 1730 66.2
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2187.1 1715 66.6
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2186.0 1701 66.8
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2186.0 1691 67.3
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2184.8 1704 66.8
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2181.4 1702 66.5
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2179.8 1712 65.5
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2176.7 1683 67.3
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2176.0 1714 66.7
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2169.8 1704 66.4
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2168.3 1706 65.5
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2165.2 1723 65.5
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2154.0 1722 66.1
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2154.0 1729 65.0
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2151.7 1706 65.8
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2145.9 1683 66.4
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2145.9 1707 66.4
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2144.4 1696 65.4
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2142.9 1754 64.7
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2142.1 1723 65.5
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2140.9 1736 65.3
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2135.9 1709 65.7
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2133.2 1691 65.5
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2130.5 1717 64.8
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2129.4 1717 66.0
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2128.2 1699 65.2
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2127.8 1663 66.2
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2125.9 1679 65.5
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2125.1 1730 64.9
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2123.6 1719 64.9
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2114.7 1731 65.0
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2110.1 1726 64.1
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2104.3 1715 63.6
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2103.9 1729 64.8
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2094.7 1704 64.5
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2084.7 1522 68.8
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2074.3 1699 63.3
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2071.2 1692 64.5
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2068.5 1698 64.3
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2057.7 1706 63.9
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2056.6 1708 63.7
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2055.0 1668 64.4
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2053.1 1705 63.6
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2051.2 1710 63.0
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2050.4 1769 62.1
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2048.5 1721 62.5
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2046.9 1703 63.7
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2045.8 1665 63.8
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2043.9 1698 63.5
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2033.1 1752 62.0
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2028.8 1414 70.7
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2026.5 1676 63.1
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2013.8 1824 60.2
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1998.4 1741 62.2
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1997.2 1613 65.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 1991.5 1704 61.8
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 1987.6 1689 61.5
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1974.1 1640 62.9
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 1971.8 1710 60.9
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 1964.5 2116 53.9
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1938.7 1667 61.7
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 1922.9 1686 59.1
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1907.1 1692 58.8
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1887.1 1292 69.4
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1877.1 1295 68.5
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1864.4 1660 59.0
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1857.4 1663 61.0
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1841.6 1459 64.9
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1790.0 1167 73.6
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1760.3 1702 55.8
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1739.9 1788 56.0
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1674.4 1656 54.2
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1657.9 1681 51.6
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1650.2 1421 62.9
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1642.9 1671 52.7
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1638.6 1686 53.1
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1598.6 1628 52.1
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1578.5 1728 54.7
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1535.4 1045 70.6
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1524.6 935 78.4
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1458.0 1084 63.5
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1313.9 1126 64.4
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1294.6 1354 53.3
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1234.6 1078 63.1
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1223.8 1139 59.4
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1098.2 910 60.3
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 7.1e-304 1048.1 898 65.8
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.8e-283 980.3 741 64.2
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.3e-273 947.6 616 75.5
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 2.2e-252 877.1 681 60.6
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 5.2e-246 855.9 600 68.5
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 3.2e-240 836.6 552 73.7
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.6e-231 807.7 809 58.2
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 2.6e-205 720.7 847 43.2
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.3e-201 708.4 1560 33.3
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 9.0e-174 615.9 423 70.0
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 2.4e-150 538.1 378 70.4
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.0e-145 522.7 328 77.7
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 1.1e-131 476.1 586 54.3
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 2.4e-126 458.4 891 33.8
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 5.5e-123 447.2 698 40.0
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 5.7e-112 410.6 618 51.8
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 7.5e-104 383.6 438 42.9
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 2.7e-101 375.2 241 73.4
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 5.0e-100 370.9 336 61.3
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.9e-97 360.1 224 71.4
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 1.1e-94 353.2 246 67.5
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.7e-92 345.9 520 51.3
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 8.9e-81 307.0 192 78.1
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.5e-72 278.1 176 73.9
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 4.2e-62 245.0 176 63.1
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 4.2e-62 245.0 153 73.2
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 3.7e-58 231.9 384 49.0
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 1.2e-48 200.3 206 42.7
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 8.5e-47 194.1 129 69.8
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.6e-45 188.7 115 80.9
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 8.2e-42 177.6 132 59.8
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 4.5e-40 171.8 98 86.7
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.9e-38 166.4 90 88.9
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 8.2e-34 151.0 419 36.0
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.0e-31 144.1 123 57.7
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 4.2e-30 138.7 167 49.1
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.6e-29 136.7 187 44.9
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 2.8e-26 125.9 104 58.7
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 2.6e-24 119.4 73 79.5
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.0e-23 117.5 93 64.5
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 1.5e-22 113.6 206 37.4
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 1.9e-22 113.2 74 68.9
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.6e-21 110.2 75 76.0
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 9.7e-19 100.9 63 81.0
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.8e-18 98.6 60 75.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 2.4e-17 96.3 57 82.5
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 3.5e-16 92.4 98 44.9
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 1.0e-15 90.9 58 65.5
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 2.9e-15 89.4 84 47.6
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 1.9e-14 86.7 233 40.8
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.6e-13 82.4 50 80.0
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.4e-12 80.5 94 46.8
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 4.0e-12 79.0 51 66.7
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 8.8e-12 77.8 52 71.2
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 2.0e-11 76.6 57 63.2
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 2.0e-11 76.6 40 85.0
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 2.2e-10 73.2 165 32.7
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.8e-09 70.1 95 41.1
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 4.1e-09 68.9 43 65.1
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 5.4e-09 68.6 35 82.9
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 1.2e-08 67.4 110 37.3
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 1.0e-07 64.3 161 32.3
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 6.5e-07 61.6 44 68.2
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 2.5e-06 59.7 103 27.2
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 3.2e-06 59.3 44 59.1
Lsat_1_v5_gn_1_3160 Lactuca sativa HOM05D253955 ORTHO05D230714 9.5e-06 57.8 31 80.6


User provided reference genes

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