Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 2.1e-129 465.7 233 100.0
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.2e-113 413.3 233 87.1
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.0e-112 410.2 233 86.3
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 8.8e-112 407.1 233 85.8
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 1.7e-102 376.3 229 79.0
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 2.2e-102 375.9 229 77.7
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 6.4e-102 374.4 228 78.1
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.0e-100 369.4 229 77.7
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 3.0e-99 365.5 228 75.4
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 2.5e-98 362.5 223 77.1
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 3.3e-98 362.1 228 75.9
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 4.3e-98 361.7 227 77.1
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 5.6e-98 361.3 227 76.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 9.5e-98 360.5 229 75.1
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.2e-97 360.1 229 75.1
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 1.6e-97 359.8 229 75.5
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 3.6e-97 358.6 227 75.3
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-96 356.3 230 73.5
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.8e-96 356.3 228 74.1
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 2.3e-96 355.9 228 75.0
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 2.3e-96 355.9 229 76.0
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 4.0e-96 355.1 228 75.4
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 5.2e-96 354.8 231 72.3
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 6.8e-96 354.4 227 74.0
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 6.8e-96 354.4 229 76.4
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 8.9e-96 354.0 229 73.8
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.2e-95 353.6 240 72.9
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 1.2e-95 353.6 228 74.1
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.5e-95 353.2 228 75.0
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 1.5e-95 353.2 229 74.2
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 2.0e-95 352.8 228 74.6
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 2.0e-95 352.8 229 73.8
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.6e-95 352.4 228 72.8
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-95 352.4 228 74.6
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 2.6e-95 352.4 233 73.4
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 3.4e-95 352.1 229 75.5
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 3.4e-95 352.1 230 72.6
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 4.4e-95 351.7 228 74.1
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 9.8e-95 350.5 229 73.8
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 9.8e-95 350.5 230 72.6
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-94 350.1 228 73.7
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 6.4e-94 347.8 228 71.9
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 8.3e-94 347.4 229 73.8
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-93 346.7 228 74.1
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.4e-93 346.7 229 74.7
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 2.4e-93 345.9 227 70.5
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 3.2e-93 345.5 229 72.9
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 5.4e-93 344.7 229 74.2
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.0e-93 344.4 228 73.7
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 7.0e-93 344.4 227 70.0
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 7.0e-93 344.4 229 75.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 9.2e-93 344.0 229 73.4
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 9.2e-93 344.0 228 73.7
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.2e-92 343.6 233 70.4
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 1.6e-92 343.2 228 72.4
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 1.6e-92 343.2 228 71.5
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 1.6e-92 343.2 228 71.5
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 4.6e-92 341.7 230 71.7
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 4.6e-92 341.7 227 73.6
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 6.0e-92 341.3 223 70.0
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.0e-91 340.5 227 73.6
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.3e-91 340.1 228 71.5
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.3e-91 340.1 227 73.1
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-91 340.1 228 71.1
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.3e-91 340.1 227 73.6
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 1.7e-91 339.7 227 71.4
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.7e-91 339.7 228 69.7
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.3e-91 339.3 227 72.7
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.3e-91 339.3 228 72.8
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 3.9e-91 338.6 223 74.0
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 8.6e-91 337.4 228 70.2
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.1e-90 337.0 228 69.3
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.5e-90 336.7 223 71.3
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 1.5e-90 336.7 224 70.5
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.9e-90 336.3 228 69.3
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.9e-90 336.3 228 71.1
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.9e-90 336.3 227 70.0
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 5.6e-90 334.7 228 69.7
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 5.6e-90 334.7 223 70.0
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 7.3e-90 334.3 228 69.3
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 7.3e-90 334.3 228 72.8
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 1.2e-89 333.6 229 69.0
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 1.6e-89 333.2 228 69.3
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.6e-89 333.2 228 69.3
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.6e-89 333.2 228 69.7
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.6e-89 333.2 223 71.7
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 2.1e-89 332.8 228 68.9
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.1e-89 332.8 228 69.7
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 4.7e-89 331.6 228 68.9
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 4.7e-89 331.6 228 69.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 4.7e-89 331.6 228 67.5
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 6.2e-89 331.3 222 75.2
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.4e-88 330.1 226 68.6
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.4e-88 330.1 233 68.2
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.8e-88 329.7 228 68.0
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 2.3e-88 329.3 227 70.5
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.1e-88 328.9 227 69.2
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 8.9e-88 327.4 227 71.4
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 1.2e-87 327.0 227 70.9
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.6e-87 325.9 228 67.5
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-87 325.9 202 77.2
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 226 67.7
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.6e-87 325.9 227 68.3
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 2.6e-87 325.9 263 62.4
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.4e-87 325.5 228 68.9
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.4e-87 325.1 227 69.6
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 7.5e-87 324.3 227 70.9
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 9.8e-87 323.9 310 53.5
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 1.7e-86 323.2 228 66.2
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 2.2e-86 322.8 223 68.6
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 1.4e-85 320.1 228 68.0
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 5.4e-85 318.2 228 68.0
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.8e-84 314.3 228 67.5
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 1.2e-81 307.0 229 65.5
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 1.6e-81 306.6 223 66.4
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 2.8e-81 305.8 204 71.6
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 2.8e-81 305.8 229 62.0
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 5.2e-80 301.6 233 66.5
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 4.4e-79 298.5 221 64.3
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 5.8e-79 298.1 214 65.4
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 7.6e-79 297.7 229 62.4
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 8.4e-78 294.3 192 74.0
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.9e-77 293.1 231 63.6
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 3.2e-77 292.4 197 71.6
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 7.1e-77 291.2 220 64.5
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 2.8e-73 279.3 224 62.5
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 6.4e-70 268.1 195 66.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.9e-69 266.5 181 72.4
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.3e-67 260.4 238 56.7
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 1.8e-64 250.0 182 70.9
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 1.7e-62 243.4 148 75.7
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 9.3e-61 237.7 223 52.9
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.3e-59 233.0 223 52.0
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 3.0e-59 232.6 213 56.8
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 6.7e-59 231.5 133 78.9
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-57 226.1 144 72.2
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.8e-56 223.4 218 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 5.3e-56 221.9 222 51.4
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 3.2e-53 212.6 124 79.0
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 2.5e-50 203.0 169 59.2
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 1.9e-45 186.8 144 61.8
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 7.1e-45 184.9 143 65.0
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 2.7e-44 183.0 134 65.7
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 4.6e-44 182.2 146 63.7
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 7.9e-44 181.4 147 61.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 7.9e-44 181.4 116 70.7
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 1.8e-43 180.3 140 58.6
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 9.7e-42 174.5 202 44.1
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 8.2e-41 171.4 144 56.9
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-36 157.1 126 61.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 3.9e-35 152.5 197 44.2
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 3.3e-34 149.4 109 68.8
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 3.3e-34 149.4 88 78.4
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 7.4e-34 148.3 185 41.6
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 2.8e-33 146.4 85 80.0
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 1.1e-32 144.4 85 77.6
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.8e-32 143.7 102 70.6
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.3e-30 137.5 119 57.1
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 6.5e-30 135.2 124 54.8
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.9e-29 133.7 82 79.3
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 2.7e-28 129.8 108 59.3
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.7e-28 129.8 91 70.3
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 2.7e-28 129.8 85 74.1
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.6e-28 129.4 85 70.6
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 7.9e-28 128.3 95 68.4
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 2.2e-25 120.2 77 77.9
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 9.1e-24 114.8 85 65.9
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.5e-23 114.0 78 70.5
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 5.9e-23 112.1 74 73.0
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.9e-22 109.8 85 62.4
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 1.4e-21 107.5 107 57.9
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-20 104.0 145 40.0
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.6e-18 96.7 85 60.0
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.7e-17 94.0 184 32.1
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 2.2e-17 93.6 58 72.4
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.4e-16 90.9 63 68.3
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 3.8e-14 82.8 60 70.0
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 5.0e-14 82.4 67 62.7
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 6.5e-14 82.0 51 74.5
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 1.5e-13 80.9 189 29.6
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.9e-13 80.5 58 65.5
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 8.0e-12 75.1 49 71.4
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 5.2e-11 72.4 173 31.8


User provided reference genes

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