Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 3.6e-255 884.4 449 100.0
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 9.3e-227 790.0 443 87.4
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.3e-196 689.9 394 86.0
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 3.7e-191 671.8 440 73.0
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.0e-189 666.0 441 72.8
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 5.9e-189 664.5 448 72.5
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 5.0e-188 661.4 449 71.9
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 6.6e-188 661.0 448 72.1
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 8.6e-188 660.6 466 70.4
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.1e-187 660.2 450 72.9
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 8.0e-186 654.1 450 71.1
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.5e-184 649.8 440 72.0
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 5.7e-184 647.9 450 70.9
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.8e-183 645.6 440 71.4
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 1.0e-180 637.1 445 69.2
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 2.5e-179 632.5 428 70.6
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 7.3e-179 630.9 441 70.3
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.6e-178 629.8 449 68.6
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.6e-178 629.8 467 66.0
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.1e-178 629.4 449 68.4
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 8.0e-178 627.5 450 67.8
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.4e-177 626.7 441 69.6
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 5.2e-177 624.8 450 67.1
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 2.6e-176 622.5 449 68.6
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 5.8e-176 621.3 441 68.7
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 9.8e-176 620.5 416 72.6
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.9e-175 619.0 411 71.3
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 3.2e-174 615.5 448 67.4
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 5.4e-174 614.8 454 68.5
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 5.4e-174 614.8 448 67.0
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.4e-174 614.8 448 67.0
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 9.2e-174 614.0 450 66.7
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 1.6e-173 613.2 441 68.3
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 1.6e-173 613.2 441 68.3
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 6.0e-173 611.3 451 66.1
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.3e-172 610.1 442 67.4
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.7e-172 609.8 450 66.4
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.3e-172 609.4 450 65.8
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 3.0e-172 609.0 452 66.4
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 3.0e-172 609.0 450 66.7
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 3.0e-172 609.0 469 65.5
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 4.3e-171 605.1 450 66.9
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.6e-170 603.2 451 65.2
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 2.1e-170 602.8 456 64.3
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 6.2e-170 601.3 450 64.9
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 1.8e-169 599.7 450 64.0
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 2.3e-169 599.4 440 66.1
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 6.8e-169 597.8 449 66.4
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 1.5e-168 596.7 390 71.8
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.6e-168 595.9 456 65.1
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 3.4e-168 595.5 440 64.3
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 9.8e-168 594.0 440 63.9
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.3e-167 593.6 451 64.7
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 1.7e-167 593.2 441 65.8
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.7e-167 593.2 440 66.6
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.2e-167 592.8 452 64.8
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.4e-166 590.1 442 66.3
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.4e-166 590.1 441 65.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 2.4e-166 589.3 442 65.2
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 9.2e-166 587.4 451 64.1
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 9.2e-166 587.4 451 64.1
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.6e-165 585.1 440 64.3
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 4.6e-165 585.1 448 65.0
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 1.0e-164 583.9 477 61.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.0e-164 583.9 446 64.8
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.0e-164 583.9 446 64.6
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 1.3e-164 583.6 477 61.6
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.7e-164 583.2 446 64.3
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.3e-164 582.8 446 64.6
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 3.0e-164 582.4 548 56.2
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.9e-164 582.0 446 64.1
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 6.6e-164 581.3 441 64.6
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.1e-163 580.5 446 64.3
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.1e-163 580.5 440 64.5
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.5e-163 580.1 446 65.0
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 1.9e-163 579.7 441 65.1
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 2.5e-163 579.3 486 60.1
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 2.5e-163 579.3 444 63.5
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 4.3e-163 578.6 445 64.9
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 2.8e-162 575.9 441 64.6
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 2.8e-162 575.9 443 64.6
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 8.1e-162 574.3 443 64.3
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 1.1e-161 573.9 441 64.4
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 1.1e-161 573.9 441 64.4
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.1e-161 573.9 441 64.2
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 1.4e-161 573.5 441 64.2
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.8e-161 573.2 450 64.0
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 2.3e-161 572.8 443 64.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 6.8e-161 571.2 450 64.2
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.2e-160 570.5 449 63.9
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-160 570.5 441 64.6
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.2e-160 570.5 441 64.6
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 2.0e-160 569.7 442 64.5
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 3.4e-160 568.9 441 63.9
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 7.5e-160 567.8 444 64.0
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 7.5e-160 567.8 441 64.4
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-159 567.0 441 64.4
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.7e-159 566.6 384 69.3
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 3.7e-159 565.5 452 62.8
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 8.3e-159 564.3 444 62.6
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.1e-158 563.9 464 61.0
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.1e-158 562.0 440 64.8
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-156 556.6 468 60.7
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 2.5e-155 552.7 462 61.9
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 3.6e-154 548.9 449 60.1
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.4e-153 547.0 451 60.5
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.8e-153 546.6 462 61.3
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 8.9e-153 544.3 383 67.9
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.1e-150 537.3 475 57.1
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 2.7e-149 532.7 442 61.1
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 2.3e-148 529.6 396 65.2
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 4.3e-147 525.4 446 58.3
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.3e-145 518.5 404 63.9
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 6.9e-145 518.1 447 57.0
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 3.8e-143 512.3 446 56.3
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 8.1e-138 494.6 433 57.7
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.1e-137 492.7 383 62.9
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 4.5e-136 488.8 434 55.1
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 4.3e-131 472.2 447 52.6
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 7.4e-131 471.5 452 53.3
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.6e-125 453.8 447 50.8
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.5e-125 452.6 447 50.6
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 4.6e-125 452.2 383 57.4
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 6.0e-125 451.8 349 64.5
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 2.5e-123 446.4 450 50.2
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 3.8e-119 432.6 310 70.0
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 5.7e-115 418.7 443 51.9
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.6e-112 409.8 439 52.4
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 6.1e-109 398.7 316 62.0
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.0e-107 393.7 447 46.8
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.9e-100 369.4 392 50.3
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.5e-99 367.5 250 69.2
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.0e-92 343.2 266 67.3
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 4.5e-88 329.3 446 41.7
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 7.7e-88 328.6 293 57.7
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 2.3e-71 273.9 186 71.0
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 3.6e-69 266.5 313 49.2
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.8e-61 240.4 457 36.5
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.8e-60 237.7 158 69.6
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.7e-55 221.1 132 75.8
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 6.0e-48 196.1 154 64.3
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.7e-47 194.5 192 51.0
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 6.8e-44 182.6 174 51.1
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.1e-40 171.0 140 60.0
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.3e-39 168.3 121 66.1
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.2e-36 156.4 133 57.9
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.7e-31 141.4 116 64.7
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.7e-31 141.4 94 71.3
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 4.2e-25 120.2 112 55.4
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.3e-23 115.2 101 52.5
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 1.8e-20 104.8 63 76.2
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 3.7e-13 80.5 76 55.3
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 4.8e-13 80.1 60 58.3
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 3.1e-12 77.4 106 37.7
Haze_14723 Corylus avellana HOM05D004544 ORTHO05D005504 9.0e-12 75.9 77 49.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 2.9e-10 70.9 39 74.4
Nitab4.5_0006570g0020 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.4e-09 68.6 43 74.4
FvH4_5g06577 Fragaria vesca HOM05D000025 ORTHO05D000040 1.8e-07 61.6 37 81.1
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 3.3e-06 57.4 177 29.4


User provided reference genes

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