Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 1.5e-162 576.2 318 100.0
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 8.1e-108 394.4 230 93.5
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.2e-50 204.5 240 51.7
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.0e-50 203.8 240 52.1
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 1.0e-49 201.4 228 54.8
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 9.8e-37 158.3 237 45.1
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 3.6e-31 139.8 253 41.5
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 2.3e-30 137.1 252 36.9
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 6.8e-30 135.6 255 39.2
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 2.0e-29 134.0 253 38.3
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 2.6e-29 133.7 238 40.3
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 4.4e-29 132.9 241 41.1
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 2.2e-28 130.6 249 37.8
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 2.8e-28 130.2 224 42.0
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 4.1e-27 126.3 255 36.9
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 4.1e-27 126.3 245 37.6
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 7.0e-27 125.6 245 36.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.0e-26 124.0 245 36.7
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.0e-26 124.0 245 36.7
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 2.0e-26 124.0 235 39.1
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 2.7e-26 123.6 247 36.8
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 3.5e-26 123.2 247 38.5
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.5e-26 122.9 247 38.5
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 7.8e-26 122.1 247 35.6
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.7e-25 120.9 240 36.7
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 1.7e-25 120.9 249 38.2
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 1.7e-25 120.9 248 36.7
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.7e-25 120.9 264 36.4
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 2.3e-25 120.6 243 35.4
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 2.9e-25 120.2 240 38.8
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 3.9e-25 119.8 255 35.7
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 6.6e-25 119.0 252 34.9
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.6e-25 119.0 252 34.9
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 8.6e-25 118.6 253 34.4
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 8.6e-25 118.6 271 37.6
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.1e-24 118.2 225 37.3
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 1.5e-24 117.9 259 35.5
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.5e-24 117.9 260 37.7
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 2.5e-24 117.1 227 38.3
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 2.5e-24 117.1 245 36.7
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.6e-24 115.9 213 36.2
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.2e-23 114.8 245 35.5
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.6e-23 114.4 230 37.8
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 8.0e-23 112.1 259 32.8
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.0e-22 111.7 231 39.0
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.8e-22 110.9 245 34.3
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 1.8e-22 110.9 147 46.9
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.8e-22 110.9 267 35.2
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.3e-22 110.5 212 35.4
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 2.3e-22 110.5 250 38.4
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 2.3e-22 110.5 166 42.2
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 8.9e-22 108.6 223 35.0
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 8.9e-22 108.6 243 32.1
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 3.4e-21 106.7 201 34.8
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 3.4e-21 106.7 251 34.3
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 3.4e-21 106.7 225 34.7
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 4.4e-21 106.3 249 34.5
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 5.8e-21 105.9 243 35.8
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 7.5e-21 105.5 233 34.3
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.7e-20 104.4 246 32.1
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.2e-20 104.0 214 37.9
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 2.9e-20 103.6 101 54.5
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 3.7e-20 103.2 135 45.9
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.1e-19 101.7 241 34.0
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 1.4e-19 101.3 237 33.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.9e-19 100.9 236 35.2
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 2.4e-19 100.5 244 33.2
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 4.1e-19 99.8 250 34.4
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 4.1e-19 99.8 235 34.9
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 4.1e-19 99.8 236 32.6
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 4.1e-19 99.8 95 55.8
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 5.4e-19 99.4 228 35.1
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 7.0e-19 99.0 223 33.6
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 7.0e-19 99.0 138 42.8
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 1.6e-18 97.8 250 33.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.5e-18 96.7 252 30.2
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 3.5e-18 96.7 253 32.0
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 4.6e-18 96.3 232 33.2
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 6.0e-18 95.9 93 53.8
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 6.0e-18 95.9 229 33.6
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 1.0e-17 95.1 103 53.4
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.3e-17 94.7 232 32.8
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.3e-17 94.0 231 32.9
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 3.0e-17 93.6 237 32.9
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 3.9e-17 93.2 240 31.2
HanXRQChr02g0059211 Helianthus annuus HOM05D001447 ORTHO05D005923 3.9e-17 93.2 71 77.5
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 6.6e-17 92.4 215 31.6
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 6.6e-17 92.4 207 31.4
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 6.6e-17 92.4 228 34.6
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 8.6e-17 92.0 221 35.3
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 8.6e-17 92.0 221 35.3
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 8.6e-17 92.0 160 40.6
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.5e-16 91.3 245 32.7
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 1.9e-16 90.9 217 35.5
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.9e-16 90.9 148 36.5
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 4.3e-16 89.7 128 43.0
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 7.3e-16 89.0 242 30.6
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 9.5e-16 88.6 70 64.3
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 2.8e-15 87.0 221 33.0
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 3.6e-15 86.7 144 41.0
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 4.7e-15 86.3 153 38.6
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 6.2e-15 85.9 301 30.6
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 8.0e-15 85.5 245 31.0
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.1e-14 83.6 129 44.2
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.0e-13 80.9 249 30.9
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 2.0e-13 80.9 98 49.0
HanXRQChr12g0370631 Helianthus annuus HOM05D001447 ORTHO05D227589 4.4e-13 79.7 60 78.3
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.3e-12 78.2 201 32.8
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 2.2e-12 77.4 122 41.0
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 2.2e-12 77.4 299 30.1
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 4.9e-12 76.3 244 30.3
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.1e-11 73.2 146 39.0
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 7.0e-11 72.4 134 35.8
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 7.0e-11 72.4 111 38.7
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 9.2e-11 72.0 265 26.8
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 3.5e-10 70.1 114 39.5
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 3.9e-09 66.6 205 30.2
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 8.6e-09 65.5 101 36.6
HanXRQChr11g0351241 Helianthus annuus HOM05D000030 ORTHO05D000031 9.5e-08 62.0 34 97.1
HanXRQChr17g0554281 Helianthus annuus HOM05D000030 ORTHO05D000009 9.5e-08 62.0 34 97.1
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 9.5e-08 62.0 215 30.2
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 8.1e-07 58.9 80 38.8
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.1e-06 58.5 218 31.7
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 1.8e-06 57.8 119 35.3
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 8.9e-06 55.5 112 34.8


User provided reference genes

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