Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0116571 Helianthus annuus HOM05D007799 ORTHO05D009854 2.7e-143 511.9 243 100.0
HanXRQChr15g0482011 Helianthus annuus HOM05D007799 ORTHO05D009854 3.9e-110 401.7 244 79.1
Lsat_1_v5_gn_7_27461 Lactuca sativa HOM05D007799 ORTHO05D009854 2.6e-98 362.5 246 72.0
ECA236G2997 Erigeron canadensis HOM05D007799 ORTHO05D009854 2.0e-90 336.3 225 70.2
Peaxi162Scf00045g02414 Petunia axillaris HOM05D007799 ORTHO05D009854 1.5e-69 266.9 238 53.8
Manes.15G125000 Manihot esculenta HOM05D007799 ORTHO05D009854 4.5e-66 255.4 240 52.1
Nitab4.5_0005655g0010 Nicotiana tabacum HOM05D007799 ORTHO05D009854 1.0e-65 254.2 237 51.5
Oeu032721.1 Olea europaea HOM05D007799 ORTHO05D009854 2.7e-63 246.1 222 52.7
Prupe.4G085700 Prunus persica HOM05D007799 ORTHO05D009854 2.3e-62 243.0 236 51.3
QL05p055084 Quercus lobata HOM05D007799 ORTHO05D009854 5.1e-62 241.9 237 50.2
DCAR_003890 Daucus carota HOM05D007799 ORTHO05D009854 8.8e-62 241.1 246 45.1
Oeu031191.1 Olea europaea HOM05D007799 ORTHO05D009854 1.5e-61 240.4 218 53.7
CSS0035706 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 3.3e-61 239.2 228 51.3
MD10G1258100 Malus domestica HOM05D007799 ORTHO05D009854 3.3e-61 239.2 236 50.8
CSS0034958 Camellia sinensis var. sinensis HOM05D007799 ORTHO05D009854 4.3e-61 238.8 228 51.3
Cfa000897 Carpinus fangiana HOM05D007799 ORTHO05D009854 7.4e-61 238.0 240 48.8
PGSC0003DMG400002292 Solanum tuberosum HOM05D007799 ORTHO05D009854 7.4e-61 238.0 237 47.7
Rhsim13G0117700 Rhododendron simsii HOM05D007799 ORTHO05D009854 1.3e-60 237.3 222 52.3
RcHm_v2.0_Chr5g0014941 Rosa chinensis HOM05D007799 ORTHO05D009854 2.2e-60 236.5 235 50.6
MBI02_g12199_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 3.7e-60 235.7 237 47.7
FvH4_3g05030 Fragaria vesca HOM05D007799 ORTHO05D009854 2.4e-59 233.0 235 49.4
Lj6g0006831 Lotus japonicus HOM05D007799 ORTHO05D009854 2.4e-59 233.0 236 48.3
FAN11G0145 Fragaria x ananassa HOM05D007799 ORTHO05D009854 3.1e-59 232.6 235 48.9
FAN25G3832 Fragaria x ananassa HOM05D007799 ORTHO05D009854 3.1e-59 232.6 235 49.4
MD05G1279400 Malus domestica HOM05D007799 ORTHO05D009854 4.1e-59 232.3 236 50.0
Thecc.06G144300 Theobroma cacao HOM05D007799 ORTHO05D009854 6.9e-59 231.5 237 46.8
CiPaw.09G119600 Carya illinoinensis HOM05D007799 ORTHO05D009854 9.1e-59 231.1 236 48.3
Duzib192G0648 Durio zibethinus HOM05D007799 ORTHO05D009854 2.6e-58 229.6 236 47.5
FAN16G3425 Fragaria x ananassa HOM05D007799 ORTHO05D009854 3.4e-58 229.2 235 48.1
FAN21G3556 Fragaria x ananassa HOM05D007799 ORTHO05D009854 3.4e-58 229.2 235 48.9
Glyma.13G221700 Glycine max HOM05D007799 ORTHO05D009854 5.9e-58 228.4 236 47.9
Cc00_g02020 Coffea canephora HOM05D007799 ORTHO05D009854 7.7e-58 228.0 238 46.6
CiPaw.10G088800 Carya illinoinensis HOM05D007799 ORTHO05D009854 1.0e-57 227.6 237 47.7
Lalb_Chr20g0117681 Lupinus albus HOM05D007799 ORTHO05D009854 2.2e-57 226.5 237 46.0
Duzib235G1165 Durio zibethinus HOM05D007799 ORTHO05D009854 3.8e-57 225.7 238 47.1
MBI18_g11218_MAGBIO Magnolia biondii HOM05D007799 ORTHO05D009854 1.4e-56 223.8 236 46.6
Glyma.15G090500 Glycine max HOM05D007799 ORTHO05D009854 9.4e-56 221.1 236 47.0
Medtr2g018670 Medicago truncatula HOM05D007799 ORTHO05D009854 2.1e-55 219.9 236 46.6
COL.COLO4_31009 Corchorus olitorius HOM05D007799 ORTHO05D009854 6.1e-55 218.4 226 46.0
SalBow8G4130 Salvia bowleyana HOM05D007799 ORTHO05D009854 7.9e-55 218.0 224 48.2
GSVIVG01021549001 Vitis vinifera HOM05D007799 ORTHO05D009854 1.0e-54 217.6 214 50.0
Eucgr.D00266 Eucalyptus grandis HOM05D007799 ORTHO05D009854 1.8e-54 216.9 225 49.8
VMungo0540G2150 Vigna mungo HOM05D007799 ORTHO05D009854 1.8e-54 216.9 237 46.0
Ca_00511_v3 Cicer arietinum L. HOM05D007799 ORTHO05D009854 2.3e-54 216.5 236 46.6
Lalb_Chr15g0086631 Lupinus albus HOM05D007799 ORTHO05D009854 2.3e-54 216.5 238 45.4
TPR.G26257 Trifolium pratense HOM05D007799 ORTHO05D009854 2.3e-54 216.5 238 45.8
Nitab4.5_0000315g0030 Nicotiana tabacum HOM05D007799 ORTHO05D009854 3.9e-54 215.7 240 46.2
Psat1g192080 Pisum sativum HOM05D007799 ORTHO05D009854 3.9e-54 215.7 236 46.6
CANSAT35G1982 Cannabis sativa HOM05D007799 ORTHO05D009854 5.1e-54 215.3 221 49.3
Ciclev10016395m.g Citrus clementina HOM05D007799 ORTHO05D009854 7.4e-53 211.5 225 47.1
Atru.chr10.1081 Acer truncatum HOM05D007799 ORTHO05D009854 9.7e-53 211.1 219 47.5
Gorai.010G237400 Gossypium raimondii HOM05D007799 ORTHO05D009854 6.3e-52 208.4 217 48.4
Migut.K01168 Erythranthe guttata HOM05D007799 ORTHO05D009854 1.1e-51 207.6 211 48.3
Potri.011G081701 Populus trichocarpa HOM05D007799 ORTHO05D009854 1.1e-51 207.6 222 47.7
VMungo0251G0945 Vigna mungo HOM05D007799 ORTHO05D009854 1.4e-51 207.2 234 45.7
PGR083G2472 Punica granatum HOM05D007799 ORTHO05D009854 7.0e-51 204.9 224 45.5
Gohir.A06G196000 Gossypium hirsutum HOM05D007799 ORTHO05D009854 9.1e-51 204.5 217 47.5
arahy.Tifrunner.gnm1.ann1.80ML42 Arachis hypogaea HOM05D007799 ORTHO05D009854 1.5e-50 203.8 232 46.1
Gohir.D06G203500 Gossypium hirsutum HOM05D007799 ORTHO05D009854 3.5e-50 202.6 212 47.6
arahy.Tifrunner.gnm1.ann1.NZ6SRJ Arachis hypogaea HOM05D007799 ORTHO05D009854 4.5e-50 202.2 237 44.3
HPP92_026553 Vanilla planifolia HOM05D007799 ORTHO05D009854 4.5e-50 202.2 226 42.5
Phvul.002G177900 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 5.9e-50 201.8 231 45.0
Haze_05684 Corylus avellana HOM05D007799 ORTHO05D009854 3.8e-49 199.1 239 43.1
DCAR_007872 Daucus carota HOM05D007799 ORTHO05D009854 6.5e-49 198.4 247 41.3
Lalb_Chr13g0294011 Lupinus albus HOM05D007799 ORTHO05D009854 6.5e-49 198.4 240 42.9
Glyma.05G143400 Glycine max HOM05D007799 ORTHO05D009854 3.2e-48 196.1 238 43.3
Glyma.08G099800 Glycine max HOM05D007799 ORTHO05D009854 1.6e-47 193.7 238 42.4
Actinidia32344 Actinidia chinensis HOM05D007799 ORTHO05D009854 2.1e-47 193.4 189 49.2
vmacro03431 Vaccinium macrocarpon HOM05D007799 ORTHO05D009854 4.7e-47 192.2 249 44.2
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea HOM05D002205 ORTHO05D004847 4.4e-45 185.7 236 42.8
Dinv32213 Davidia involucrata HOM05D007799 ORTHO05D009854 4.4e-45 185.7 173 53.2
Medtr8g079475 Medicago truncatula HOM05D007799 ORTHO05D009854 4.4e-45 185.7 233 44.2
arahy.Tifrunner.gnm1.ann1.W0WEAA Arachis hypogaea HOM05D007799 ORTHO05D009854 7.4e-45 184.9 236 42.4
HPP92_028169 Vanilla planifolia HOM05D007799 ORTHO05D009854 1.3e-44 184.1 226 41.2
CDE12G0863 Ceratophyllum demersum HOM05D007799 ORTHO05D009854 1.4e-43 180.6 232 42.7
TAR624G0778 Trochodendron aralioides HOM05D007799 ORTHO05D009854 7.0e-43 178.3 160 55.0
Nn3g20329 Nelumbo nucifera HOM05D007799 ORTHO05D009854 9.1e-43 177.9 237 40.5
ClCG03G006490 Citrullus lanatus HOM05D007799 ORTHO05D009854 6.8e-38 161.8 235 38.3
ATR1098G006 Amborella trichopoda HOM05D007799 ORTHO05D009854 3.4e-37 159.5 235 36.2
CsaV3_1G036880 Cucumis sativus L. HOM05D007799 ORTHO05D009854 9.7e-37 157.9 221 37.6
Sed0012400 Sechium edule HOM05D007799 ORTHO05D009854 2.8e-36 156.4 219 39.3
Phvul.006G168136 Phaseolus vulgaris HOM05D007799 ORTHO05D009854 1.0e-33 147.9 183 42.6
Lj1C1169G11 Lonicera japonica HOM05D002205 ORTHO05D004847 1.7e-28 130.6 96 61.5
TPR.G9572 Trifolium pratense HOM05D007799 ORTHO05D009854 3.7e-28 129.4 180 41.7
Solyc08g023510.3 Solanum lycopersicum HOM05D007799 ORTHO05D009854 2.4e-27 126.7 148 42.6
Sopen08g008720 Solanum pennellii HOM05D007799 ORTHO05D009854 2.4e-27 126.7 154 40.9
MELO3C035703.2 Cucumis melo HOM05D007799 ORTHO05D009854 1.1e-19 101.3 166 35.5
TPR.G18987 Trifolium pratense HOM05D007799 ORTHO05D009854 3.3e-16 89.7 65 63.1
HPP92_026526 Vanilla planifolia HOM05D007799 ORTHO05D009854 1.4e-14 84.3 86 41.9


User provided reference genes

Program Settings