Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0116151 Helianthus annuus HOM05D002501 ORTHO05D038968 1.4e-22 108.6 51 100.0
HanXRQChr15g0488131 Helianthus annuus HOM05D002501 ORTHO05D002952 6.6e-12 73.2 35 97.1
Lsat_1_v5_gn_8_2381 Lactuca sativa HOM05D002501 ORTHO05D002952 2.5e-11 71.2 35 94.3
Lsat_1_v5_gn_8_2441 Lactuca sativa HOM05D002501 ORTHO05D002952 3.3e-11 70.9 35 91.4
HanXRQChr08g0226181 Helianthus annuus HOM05D002501 ORTHO05D002952 7.3e-11 69.7 35 91.4
Lsat_1_v5_gn_8_2401 Lactuca sativa HOM05D002501 ORTHO05D002952 9.6e-11 69.3 35 91.4
ECA233G2688 Erigeron canadensis HOM05D002501 ORTHO05D002952 2.1e-10 68.2 35 88.6
Lj8A197T40 Lonicera japonica HOM05D002501 ORTHO05D002952 2.1e-10 68.2 36 83.3
Migut.F02099 Erythranthe guttata HOM05D002501 ORTHO05D002952 5.8e-08 60.1 35 71.4
Duzib106G0244 Durio zibethinus HOM05D002501 ORTHO05D002952 9.9e-08 59.3 35 74.3
Migut.F01851 Erythranthe guttata HOM05D002501 ORTHO05D002952 9.9e-08 59.3 35 71.4
Nitab4.5_0001003g0010 Nicotiana tabacum HOM05D002501 ORTHO05D002952 9.9e-08 59.3 35 74.3
Nitab4.5_0003303g0020 Nicotiana tabacum HOM05D002501 ORTHO05D002952 9.9e-08 59.3 35 74.3
Carub.0003s0248 Capsella rubella HOM05D002501 ORTHO05D002952 1.7e-07 58.5 35 71.4
MBI08_g18906_MAGBIO Magnolia biondii HOM05D002501 ORTHO05D002952 1.7e-07 58.5 35 74.3
DCAR_023898 Daucus carota HOM05D002501 ORTHO05D002952 2.2e-07 58.2 35 74.3
Nitab4.5_0006561g0030 Nicotiana tabacum HOM05D002501 ORTHO05D002952 2.2e-07 58.2 35 74.3
Potri.008G076300 Populus trichocarpa HOM05D002501 ORTHO05D002952 2.2e-07 58.2 35 71.4
Sc09g0001370 Simmondsia chinensis HOM05D002501 ORTHO05D002952 2.2e-07 58.2 35 71.4
AL3G12940 Arabidopsis lyrata HOM05D002501 ORTHO05D002952 2.9e-07 57.8 35 71.4
CAN.G321.24 Capsicum annuum HOM05D002501 ORTHO05D002952 2.9e-07 57.8 35 74.3
Dinv21360 Davidia involucrata HOM05D002501 ORTHO05D002952 2.9e-07 57.8 36 72.2
Oeu001210.1 Olea europaea HOM05D002501 ORTHO05D002952 2.9e-07 57.8 35 68.6
PGR119G0566 Punica granatum HOM05D002501 ORTHO05D002952 2.9e-07 57.8 35 62.9
Thecc.05G187600 Theobroma cacao HOM05D002501 ORTHO05D002952 2.9e-07 57.8 35 71.4
AUR62006629 Chenopodium quinoa HOM05D002501 ORTHO05D002952 3.8e-07 57.4 35 68.6
COL.COLO4_32063 Corchorus olitorius HOM05D002501 ORTHO05D002952 3.8e-07 57.4 38 63.2
Manes.13G001900 Manihot esculenta HOM05D002501 ORTHO05D002952 3.8e-07 57.4 35 71.4
MSTRG.8198 Avicennia marina HOM05D002501 ORTHO05D038968 4.9e-07 57.0 36 66.7
PGSC0003DMG400016253 Solanum tuberosum HOM05D002501 ORTHO05D002952 4.9e-07 57.0 35 71.4
Aa31LG5G13790 Aethionema arabicum HOM05D002501 ORTHO05D002952 6.4e-07 56.6 35 68.6
Hma1.2p1_0831F.1_g225280 Hydrangea macrophylla HOM05D002501 ORTHO05D002952 6.4e-07 56.6 35 71.4
Peaxi162Scf00296g00910 Petunia axillaris HOM05D002501 ORTHO05D002952 6.4e-07 56.6 35 71.4
Sabra08G0056700 Salix brachista HOM05D002501 ORTHO05D002952 6.4e-07 56.6 35 68.6
SalBow1G8055 Salvia bowleyana HOM05D002501 ORTHO05D002952 6.4e-07 56.6 35 65.7
TAR633G2364 Trochodendron aralioides HOM05D002501 ORTHO05D002952 6.4e-07 56.6 35 68.6
CSS0030732 Camellia sinensis var. sinensis HOM05D002501 ORTHO05D002952 8.4e-07 56.2 35 68.6
CARHR077350 Cardamine hirsuta HOM05D002501 ORTHO05D002952 8.4e-07 56.2 35 68.6
Gorai.004G264000 Gossypium raimondii HOM05D002501 ORTHO05D002952 8.4e-07 56.2 35 65.7
vmacro19581 Vaccinium macrocarpon HOM05D002501 ORTHO05D002952 8.4e-07 56.2 35 68.6
AT3G03310 Arabidopsis thaliana HOM05D002501 ORTHO05D002952 1.1e-06 55.8 35 68.6
AUR62000281 Chenopodium quinoa HOM05D002501 ORTHO05D002952 1.1e-06 55.8 35 65.7
Eucgr.B01436 Eucalyptus grandis HOM05D002501 ORTHO05D002952 1.1e-06 55.8 35 65.7
Eucgr.K00007 Eucalyptus grandis HOM05D002501 ORTHO05D002952 1.1e-06 55.8 35 65.7
Oeu034697.1 Olea europaea HOM05D002501 ORTHO05D002952 1.1e-06 55.8 35 71.4
Solyc11g008550.3 Solanum lycopersicum HOM05D002501 ORTHO05D002952 1.1e-06 55.8 35 71.4
TWI36G1318 Tripterygium wilfordii HOM05D002501 ORTHO05D002952 1.1e-06 55.8 35 68.6
Ciclev10011705m.g Citrus clementina HOM05D002501 ORTHO05D002952 1.4e-06 55.5 35 65.7
Rhsim05G0165300 Rhododendron simsii HOM05D002501 ORTHO05D002952 1.4e-06 55.5 35 68.6
GSVIVG01019050001 Vitis vinifera HOM05D002501 ORTHO05D002952 1.4e-06 55.5 35 65.7
Aqoxy2G04087 Aquilegia oxysepala HOM05D002501 ORTHO05D002952 1.9e-06 55.1 35 65.7
Hund07370 Selenicereus undatus HOM05D002501 ORTHO05D002952 1.9e-06 55.1 35 65.7
Ah.06g195330 Amaranthus hybridus HOM05D002501 ORTHO05D002952 2.4e-06 54.7 35 65.7
arahy.Tifrunner.gnm1.ann1.16A6WD Arachis hypogaea HOM05D002501 ORTHO05D002952 2.4e-06 54.7 35 65.7
arahy.Tifrunner.gnm1.ann1.31N1MT Arachis hypogaea HOM05D002501 ORTHO05D002952 2.4e-06 54.7 35 65.7
Lalb_Chr03g0038081 Lupinus albus HOM05D002501 ORTHO05D002952 2.4e-06 54.7 35 65.7
Atru.chr12.1678 Acer truncatum HOM05D002501 ORTHO05D002952 3.2e-06 54.3 35 65.7
Ca_08008_v3 Cicer arietinum L. HOM05D002501 ORTHO05D002952 3.2e-06 54.3 35 62.9
SGA_v2.0_scaffold122G33202 Striga asiatica HOM05D002501 ORTHO05D002952 3.2e-06 54.3 35 65.7
BolC5t35011H Brassica oleracea HOM05D002501 ORTHO05D002952 4.2e-06 53.9 35 62.9
MELO3C008598.2 Cucumis melo HOM05D002501 ORTHO05D002952 4.2e-06 53.9 35 65.7
CsaV3_2G010330 Cucumis sativus L. HOM05D002501 ORTHO05D002952 4.2e-06 53.9 35 65.7
MD04G1247600 Malus domestica HOM05D002501 ORTHO05D002952 4.2e-06 53.9 35 65.7
Actinidia03259 Actinidia chinensis HOM05D002501 ORTHO05D002952 5.4e-06 53.5 32 68.8
Actinidia31354 Actinidia chinensis HOM05D002501 ORTHO05D002952 5.4e-06 53.5 35 62.9
MSTRG.27408 Avicennia marina HOM05D002501 ORTHO05D002952 5.4e-06 53.5 35 62.9
EL10Ac4g10013 Beta vulgaris HOM05D002501 ORTHO05D002952 5.4e-06 53.5 35 62.9
FvH4_6g00170 Fragaria vesca HOM05D002501 ORTHO05D002952 5.4e-06 53.5 35 65.7
RcHm_v2.0_Chr3g0447541 Rosa chinensis HOM05D002501 ORTHO05D002952 5.4e-06 53.5 35 65.7
Sopen11g004340 Solanum pennellii HOM05D002501 ORTHO05D002952 5.4e-06 53.5 35 68.6
BcaC05g30304 Brassica carinata HOM05D002501 ORTHO05D002952 7.1e-06 53.1 35 62.9
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 7.1e-06 53.1 35 62.9
Cfa006232 Carpinus fangiana HOM05D002501 ORTHO05D002952 7.1e-06 53.1 35 65.7
MD12G1262800 Malus domestica HOM05D002501 ORTHO05D002952 7.1e-06 53.1 35 65.7
Prupe.6G364000 Prunus persica HOM05D002501 ORTHO05D002952 7.1e-06 53.1 35 65.7
VMungo1383G2506 Vigna mungo HOM05D002501 ORTHO05D002952 7.1e-06 53.1 35 62.9
CANSAT54G0338 Cannabis sativa HOM05D002501 ORTHO05D002952 9.3e-06 52.8 35 60.0


User provided reference genes

Program Settings