Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 6.9e-41 170.2 88 100.0
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 6.1e-13 77.4 53 77.4
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 2.3e-12 75.5 52 75.0
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 6.7e-12 73.9 53 71.7
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.1e-11 73.2 53 71.7
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.5e-11 72.8 53 69.8
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 2.0e-11 72.4 52 71.2
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 2.5e-11 72.0 53 69.8
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 4.3e-11 71.2 52 73.1
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 4.3e-11 71.2 52 73.1
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.3e-11 71.2 52 71.2
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 4.3e-11 71.2 53 71.7
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 5.7e-11 70.9 52 69.2
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 5.7e-11 70.9 52 69.2
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 5.7e-11 70.9 52 71.2
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 7.4e-11 70.5 53 67.9
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 7.4e-11 70.5 52 73.1
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 7.4e-11 70.5 52 69.2
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 9.7e-11 70.1 52 69.2
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 9.7e-11 70.1 52 69.2
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 9.7e-11 70.1 52 69.2
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 9.7e-11 70.1 53 67.9
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.3e-10 69.7 52 71.2
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.3e-10 69.7 53 69.8
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.7e-10 69.3 53 67.9
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.7e-10 69.3 53 66.0
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.7e-10 69.3 53 69.8
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 1.7e-10 69.3 52 71.2
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 3.7e-10 68.2 53 64.2
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 4.8e-10 67.8 53 62.3
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 4.8e-10 67.8 53 64.2
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 4.8e-10 67.8 53 67.9
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 6.3e-10 67.4 50 70.0
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 6.3e-10 67.4 53 62.3
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.3e-10 67.4 53 62.3
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.3e-10 67.4 53 62.3
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 6.3e-10 67.4 53 62.3
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.3e-10 67.4 53 64.2
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.3e-10 67.4 53 64.2
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 6.3e-10 67.4 53 64.2
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 6.3e-10 67.4 53 62.3
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 6.3e-10 67.4 53 64.2
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 8.2e-10 67.0 53 66.0
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 8.2e-10 67.0 53 66.0
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 8.2e-10 67.0 51 64.7
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 8.2e-10 67.0 53 66.0
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 8.2e-10 67.0 53 66.0
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 8.2e-10 67.0 52 71.2
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 8.2e-10 67.0 53 67.9
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.1e-09 66.6 52 63.5
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 1.4e-09 66.2 49 67.3
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 1.4e-09 66.2 51 64.7
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 1.8e-09 65.9 52 65.4
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 1.8e-09 65.9 52 63.5
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.8e-09 65.9 53 64.2
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 3.1e-09 65.1 49 65.3
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 3.1e-09 65.1 51 62.7
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 4.1e-09 64.7 52 61.5
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 4.1e-09 64.7 53 64.2
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 5.3e-09 64.3 53 62.3
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 5.3e-09 64.3 52 63.5
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 5.3e-09 64.3 52 61.5
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.9e-09 63.9 53 62.3
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 6.9e-09 63.9 53 62.3
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 6.9e-09 63.9 52 61.5
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 6.9e-09 63.9 52 59.6
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 9.1e-09 63.5 48 64.6
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 9.1e-09 63.5 70 51.4
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 9.1e-09 63.5 60 55.0
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 9.1e-09 63.5 53 58.5
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 9.1e-09 63.5 52 61.5
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 1.2e-08 63.2 51 62.7
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.2e-08 63.2 52 59.6
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.2e-08 63.2 52 63.5
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.5e-08 62.8 53 62.3
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 3.4e-08 61.6 52 57.7
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 4.5e-08 61.2 49 59.2
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.9e-08 60.8 53 56.6
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 5.9e-08 60.8 53 56.6
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 5.9e-08 60.8 52 57.7
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 5.9e-08 60.8 53 58.5
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 5.9e-08 60.8 51 60.8
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 7.7e-08 60.5 53 56.6
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 7.7e-08 60.5 51 58.8
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 7.7e-08 60.5 53 56.6
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 7.7e-08 60.5 53 56.6
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 7.7e-08 60.5 53 56.6
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 7.7e-08 60.5 53 56.6
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 7.7e-08 60.5 53 56.6
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 7.7e-08 60.5 53 56.6
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 1.3e-07 59.7 51 58.8
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 1.3e-07 59.7 52 55.8
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.3e-07 59.7 70 47.1
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.7e-07 59.3 53 54.7
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.7e-07 59.3 53 56.6
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 1.7e-07 59.3 51 58.8
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.2e-07 58.9 53 54.7
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 2.9e-07 58.5 48 62.5
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 2.9e-07 58.5 52 55.8
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 3.8e-07 58.2 52 55.8
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 5.0e-07 57.8 53 58.5
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.0e-07 57.8 53 52.8
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 5.0e-07 57.8 57 49.1
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 8.5e-07 57.0 53 52.8
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.1e-06 56.6 53 52.8
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.9e-06 55.8 51 58.8
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 4.2e-06 54.7 51 56.9
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 5.5e-06 54.3 51 54.9
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 7.2e-06 53.9 51 54.9
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 7.2e-06 53.9 51 54.9
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 7.2e-06 53.9 54 53.7


User provided reference genes

Program Settings