Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0111671 Helianthus annuus HOM05D002281 ORTHO05D005599 0.0e+00 2582.7 1299 100.0
ECA233G3880 Erigeron canadensis HOM05D002281 ORTHO05D005599 0.0e+00 2460.3 1301 95.3
Lsat_1_v5_gn_8_2941 Lactuca sativa HOM05D002281 ORTHO05D005599 0.0e+00 2377.4 1300 92.5
Dinv05786 Davidia involucrata HOM05D002281 ORTHO05D005599 0.0e+00 2243.8 1300 86.7
CSS0028465 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D005599 0.0e+00 2242.2 1303 86.3
GSVIVG01026355001 Vitis vinifera HOM05D002281 ORTHO05D005599 0.0e+00 2218.7 1303 85.0
Thecc.05G264800 Theobroma cacao HOM05D002281 ORTHO05D005599 0.0e+00 2202.6 1299 84.4
Cfa006304 Carpinus fangiana HOM05D002281 ORTHO05D005599 0.0e+00 2199.9 1300 84.8
Gohir.A13G102900 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2197.9 1299 84.4
Gorai.013G119000 Gossypium raimondii HOM05D002281 ORTHO05D005599 0.0e+00 2188.3 1299 83.9
Gohir.D13G106101 Gossypium hirsutum HOM05D002281 ORTHO05D005599 0.0e+00 2184.1 1299 83.7
Atru.chr2.1138 Acer truncatum HOM05D002281 ORTHO05D005599 0.0e+00 2178.3 1299 84.1
PGR142G2635 Punica granatum HOM05D002281 ORTHO05D005599 0.0e+00 2178.3 1299 83.4
CiPaw.07G076600 Carya illinoinensis HOM05D002281 ORTHO05D005599 0.0e+00 2174.8 1300 83.9
CANSAT54G0020 Cannabis sativa HOM05D002281 ORTHO05D005599 0.0e+00 2171.4 1299 83.4
Potri.019G025200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2162.5 1300 83.2
Solyc11g013280.1 Solanum lycopersicum HOM05D002281 ORTHO05D005599 0.0e+00 2162.5 1301 83.4
Hma1.2p1_0153F.1_g067890 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 2161.3 1305 83.2
Manes.09G145500 Manihot esculenta HOM05D002281 ORTHO05D005599 0.0e+00 2159.4 1300 82.8
Sopen11g008300 Solanum pennellii HOM05D002281 ORTHO05D005599 0.0e+00 2158.3 1301 83.4
Prupe.6G354800 Prunus persica HOM05D002281 ORTHO05D005599 0.0e+00 2157.9 1300 83.4
Eucgr.B02169 Eucalyptus grandis HOM05D002281 ORTHO05D005599 0.0e+00 2151.3 1301 82.4
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2151.3 1301 83.6
arahy.Tifrunner.gnm1.ann1.KCE1UK Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2150.9 1322 82.3
FvH4_6g01330 Fragaria vesca HOM05D002281 ORTHO05D005599 0.0e+00 2150.6 1300 83.3
Duzib106G1897 Durio zibethinus HOM05D002281 ORTHO05D005599 0.0e+00 2148.6 1299 82.8
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2142.5 1311 82.7
Glyma.19G250600 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2142.5 1301 82.6
Glyma.03G253000 Glycine max HOM05D002281 ORTHO05D005599 0.0e+00 2141.3 1301 82.6
SalBow7G0462 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2140.5 1300 81.6
Medtr7g116590 Medicago truncatula HOM05D002281 ORTHO05D005599 0.0e+00 2139.4 1298 82.7
TWI60G0078 Tripterygium wilfordii HOM05D002281 ORTHO05D005599 0.0e+00 2139.4 1299 82.3
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2139.0 1300 83.2
Lj1g0020458 Lotus japonicus HOM05D002281 ORTHO05D005599 0.0e+00 2138.6 1298 82.3
TAR362G0445 Trochodendron aralioides HOM05D002281 ORTHO05D005599 0.0e+00 2137.8 1300 82.8
Phvul.006G107600 Phaseolus vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2133.6 1298 82.3
MSTRG.1472 Avicennia marina HOM05D002281 ORTHO05D005599 0.0e+00 2132.5 1301 81.4
Sed0017844 Sechium edule HOM05D002281 ORTHO05D005599 0.0e+00 2131.3 1299 82.0
Migut.C01166 Erythranthe guttata HOM05D002281 ORTHO05D005599 0.0e+00 2130.1 1299 81.5
Potri.013G051200 Populus trichocarpa HOM05D002281 ORTHO05D005599 0.0e+00 2128.2 1300 82.0
SalBow7G2659 Salvia bowleyana HOM05D002281 ORTHO05D005599 0.0e+00 2123.6 1300 81.3
VMungo0540G0745 Vigna mungo HOM05D002281 ORTHO05D005599 0.0e+00 2117.8 1298 81.6
Sabra19G0037800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2116.3 1318 81.2
Ciclev10023801m.g Citrus clementina HOM05D002281 ORTHO05D005599 0.0e+00 2115.9 1299 82.3
BolC3t13512H Brassica oleracea HOM05D002281 ORTHO05D005599 0.0e+00 2113.6 1298 81.1
Sabra19G0034800 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 2112.8 1318 81.0
AL6G29660 Arabidopsis lyrata HOM05D002281 ORTHO05D005599 0.0e+00 2110.5 1298 81.1
Carub.0006s1667 Capsella rubella HOM05D002281 ORTHO05D005599 0.0e+00 2110.1 1298 81.2
AT5G18410 Arabidopsis thaliana HOM05D002281 ORTHO05D005599 0.0e+00 2109.0 1298 81.0
CARHR194610 Cardamine hirsuta HOM05D002281 ORTHO05D005599 0.0e+00 2106.6 1298 81.0
Nitab4.5_0000494g0100 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2105.1 1301 81.6
THA.LOC104820753 Tarenaya hassleriana HOM05D002281 ORTHO05D005599 0.0e+00 2103.2 1298 80.7
Thhalv10012457m.g Eutrema salsugineum HOM05D002281 ORTHO05D005599 0.0e+00 2100.5 1299 81.1
BraA03t10208Z Brassica rapa HOM05D002281 ORTHO05D005599 0.0e+00 2098.2 1303 80.5
Aqoxy5G01434 Aquilegia oxysepala HOM05D002281 ORTHO05D005599 0.0e+00 2096.6 1300 80.4
Nn1g03089 Nelumbo nucifera HOM05D002281 ORTHO05D005599 0.0e+00 2092.8 1301 81.5
arahy.Tifrunner.gnm1.ann1.T4Q4MP Arachis hypogaea HOM05D002281 ORTHO05D005599 0.0e+00 2087.0 1301 81.3
Ca_09474_v3 Cicer arietinum L. HOM05D002281 ORTHO05D005599 0.0e+00 2085.8 1321 80.3
Sc09g0001770 Simmondsia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 2082.4 1299 80.0
COL.COLO4_38179 Corchorus olitorius HOM05D002281 ORTHO05D005599 0.0e+00 2080.4 1299 80.4
Sp6g25910 Schrenkiella parvula HOM05D002281 ORTHO05D005599 0.0e+00 2067.7 1298 80.2
PSO674G0074 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2060.0 1299 79.7
EL10Ac4g09788 Beta vulgaris HOM05D002281 ORTHO05D005599 0.0e+00 2058.5 1300 79.4
PSO170G6144 Papaver somniferum HOM05D002281 ORTHO05D005599 0.0e+00 2055.4 1299 79.5
A03p08830 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2055.0 1304 79.2
C03p10320 Brassica napus HOM05D002281 ORTHO05D005599 0.0e+00 2054.3 1301 79.5
Haze_04485 Corylus avellana HOM05D002281 ORTHO05D005599 0.0e+00 2043.9 1320 79.5
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 2040.8 1300 80.1
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 0.0e+00 2022.7 1304 78.1
SGA_v2.0_scaffold52G18996 Striga asiatica HOM05D002281 ORTHO05D005599 0.0e+00 2020.4 1228 81.2
Nitab4.5_0000051g0330 Nicotiana tabacum HOM05D002281 ORTHO05D005599 0.0e+00 2010.7 1428 73.5
Cc10_g10590 Coffea canephora HOM05D002281 ORTHO05D005599 0.0e+00 1966.4 1176 83.3
Sabra13G0046600 Salix brachista HOM05D002281 ORTHO05D005599 0.0e+00 1909.4 1563 66.0
Hund07164 Selenicereus undatus HOM05D002281 ORTHO05D005599 0.0e+00 1904.0 1235 77.6
Os03g0143800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D005599 0.0e+00 1897.5 1307 72.8
Aa31LG11G11220 Aethionema arabicum HOM05D002281 ORTHO05D005599 0.0e+00 1889.0 1301 74.8
Zm00001eb003550 Zea mays HOM05D002281 ORTHO05D005599 0.0e+00 1862.4 1305 71.2
AUR62000642 Chenopodium quinoa HOM05D002281 ORTHO05D005599 0.0e+00 1776.9 1328 70.9
Cpa.g.sc51.37 Carica papaya HOM05D002281 ORTHO05D005599 0.0e+00 1631.7 968 84.9
Psat0s3583g0040 Pisum sativum HOM05D002281 ORTHO05D005599 0.0e+00 1619.8 968 84.0
Rhsim05G0168900 Rhododendron simsii HOM05D002281 ORTHO05D005599 0.0e+00 1592.4 1069 76.3
Actinidia03823 Actinidia chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1559.7 907 84.9
RcHm_v2.0_Chr3g0448901 Rosa chinensis HOM05D002281 ORTHO05D005599 0.0e+00 1553.9 936 82.1
HPP92_013019 Vanilla planifolia HOM05D002281 ORTHO05D005599 0.0e+00 1527.3 1212 65.3
Pp3c21_8020 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1506.9 1329 57.9
AagrBONN_evm.TU.Sc2ySwM_344.4016 Anthoceros agrestis HOM05D002281 ORTHO05D005599 0.0e+00 1506.5 1306 59.0
MELO3C015463.2 Cucumis melo HOM05D002281 ORTHO05D005599 0.0e+00 1506.5 935 79.5
Mapoly0078s0045 Marchantia polymorpha HOM05D002281 ORTHO05D005599 0.0e+00 1500.7 1303 58.3
unitig_736.g22260 Utricularia gibba HOM05D002281 ORTHO05D005599 0.0e+00 1497.6 1197 65.3
Lalb_Chr18g0044201 Lupinus albus HOM05D002281 ORTHO05D005599 0.0e+00 1483.0 911 80.4
CsaV3_1G040360 Cucumis sativus L. HOM05D002281 ORTHO05D005599 0.0e+00 1459.9 909 79.3
ClCG03G011410 Citrullus lanatus HOM05D002281 ORTHO05D005599 0.0e+00 1459.5 907 79.4
SMO348G0052 Selaginella moellendorffii HOM05D002281 ORTHO05D005599 0.0e+00 1456.4 1313 56.6
Peaxi162Scf00285g00226 Petunia axillaris HOM05D002281 ORTHO05D005599 0.0e+00 1440.2 908 79.0
MD12G1252900 Malus domestica HOM05D002281 ORTHO05D005599 0.0e+00 1403.3 844 81.8
DCAR_005524 Daucus carota HOM05D002281 ORTHO05D005599 0.0e+00 1387.5 952 73.5
Pp3c2_6040 Physcomitrium patens HOM05D002281 ORTHO05D005599 0.0e+00 1332.0 1325 51.6
ATR0787G096 Amborella trichopoda HOM05D002281 ORTHO05D005599 0.0e+00 1276.9 916 69.1
Hma1.2p1_0153F.1_g067920 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 0.0e+00 1117.1 694 81.4
CAN.G61.7 Capsicum annuum HOM05D002281 ORTHO05D005599 3.6e-255 885.9 803 59.9
Ah.06g188740 Amaranthus hybridus HOM05D002281 ORTHO05D005599 6.8e-246 855.1 827 57.4
Lj2A49T37 Lonicera japonica HOM05D002281 ORTHO05D005599 3.2e-235 819.7 492 84.8
AUR62006997 Chenopodium quinoa HOM05D002281 ORTHO05D005599 1.0e-212 745.0 501 77.6
MD12G1252700 Malus domestica HOM05D002281 ORTHO05D005599 5.7e-200 702.6 467 78.4
SHI14430 Sapria himalayana HOM05D002281 ORTHO05D005599 1.0e-193 681.8 578 62.6
Actinidia03824 Actinidia chinensis HOM05D002281 ORTHO05D005599 2.5e-179 634.0 348 92.0
RcHm_v2.0_Chr3g0448911 Rosa chinensis HOM05D002281 ORTHO05D005599 3.1e-174 617.1 348 90.5
CAN.G61.6 Capsicum annuum HOM05D002281 ORTHO05D005599 1.3e-172 611.7 348 90.2
SEGI_41506 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.1e-171 608.6 424 72.2
Lalb_Chr18g0044191 Lupinus albus HOM05D002281 ORTHO05D005599 1.5e-168 598.2 349 87.4
CDE01G0796 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 1.1e-166 592.0 448 65.8
ATR0787G220 Amborella trichopoda HOM05D002281 ORTHO05D005599 1.6e-165 588.2 348 86.8
ClCG03G011400 Citrullus lanatus HOM05D002281 ORTHO05D005599 5.2e-161 573.2 348 85.3
CsaV3_1G040370 Cucumis sativus L. HOM05D002281 ORTHO05D005599 3.9e-156 557.0 348 83.3
CDE01G0576 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 2.2e-151 541.2 381 71.1
Psat0s2603g0080 Pisum sativum HOM05D002281 ORTHO05D005599 5.0e-148 530.0 332 79.2
CBR_g23328 Chara braunii HOM05D002281 ORTHO05D005599 8.6e-148 529.3 651 43.6
vmacro19963 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 3.6e-146 523.9 435 67.6
Peaxi162Scf00285g00225 Petunia axillaris HOM05D002281 ORTHO05D005599 6.6e-140 503.1 275 93.5
Cpa.g.sc51.41 Carica papaya HOM05D002281 ORTHO05D005599 9.9e-136 489.2 302 79.5
DCAR_005525 Daucus carota HOM05D002281 ORTHO05D005599 2.0e-128 464.9 254 93.3
HPP92_013016 Vanilla planifolia HOM05D002281 ORTHO05D005599 6.9e-121 439.9 302 71.9
CAN.G61.8 Capsicum annuum HOM05D002281 ORTHO05D005599 2.6e-120 438.0 407 59.0
Lj2A49G34 Lonicera japonica HOM05D002281 ORTHO05D005599 1.9e-118 431.8 243 86.8
Haze_04492 Corylus avellana HOM05D002281 ORTHO05D005599 7.9e-117 426.4 275 82.2
HPP92_013015 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.7e-111 408.7 348 63.5
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 2.2e-103 381.7 260 77.7
arahy.Tifrunner.gnm1.ann1.I7KFZB Arachis hypogaea HOM05D002281 ORTHO05D005599 1.1e-102 379.4 266 78.2
SEGI_00068 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 6.7e-84 317.0 264 61.0
Hma1.2p1_0153F.1_g067900 Hydrangea macrophylla HOM05D002281 ORTHO05D005599 4.1e-73 281.2 154 92.2
CBR_g23326 Chara braunii HOM05D002281 ORTHO05D005599 2.0e-72 278.9 468 34.8
vmacro19965 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 2.9e-71 275.0 166 78.9
Ah.06g188770 Amaranthus hybridus HOM05D002281 ORTHO05D005599 8.5e-63 246.9 134 91.8
vmacro19966 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 6.1e-61 240.7 426 38.7
Lj2A50T26 Lonicera japonica HOM05D002281 ORTHO05D005599 1.4e-57 229.6 131 83.2
Cc10_g10600 Coffea canephora HOM05D002281 ORTHO05D005599 1.6e-56 226.1 130 88.5
Lj2A49T38 Lonicera japonica HOM05D002281 ORTHO05D005599 2.5e-54 218.8 119 85.7
SHI14432 Sapria himalayana HOM05D002281 ORTHO05D005599 2.1e-53 215.7 142 71.1
Lj2A49G35 Lonicera japonica HOM05D002281 ORTHO05D005599 4.4e-51 208.0 127 82.7
CDE02G3044 Ceratophyllum demersum HOM05D002281 ORTHO05D005599 7.5e-43 180.6 127 68.5
CBR_g74560 Chara braunii HOM05D002281 ORTHO05D005599 1.2e-40 173.3 161 55.3
BraA03t10210Z Brassica rapa HOM05D002281 ORTHO05D005599 2.3e-39 169.1 123 72.4
Gorai.007G272700 Gossypium raimondii HOM05D002281 ORTHO05D005599 1.1e-36 160.2 100 77.0
SEGI_02952 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 5.2e-36 157.9 113 66.4
Gohir.D11G253675 Gossypium hirsutum HOM05D002281 ORTHO05D005599 6.8e-36 157.5 100 76.0
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.5e-35 156.4 128 68.0
A03p08860 Brassica napus HOM05D002281 ORTHO05D005599 3.7e-34 151.8 123 66.7
SEGI_33538 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 1.5e-30 139.8 95 65.3
SEGI_28731 Sequoiadendron giganteum HOM05D002281 ORTHO05D005599 2.2e-26 125.9 133 48.9
Gohir.D11G253550 Gossypium hirsutum HOM05D002281 ORTHO05D005599 2.4e-25 122.5 71 80.3
Gorai.007G272500 Gossypium raimondii HOM05D002281 ORTHO05D005599 2.4e-25 122.5 71 78.9
Nn6g32299 Nelumbo nucifera HOM05D002281 ORTHO05D005599 9.2e-25 120.6 73 78.1
Gohir.A11G244201 Gossypium hirsutum HOM05D002281 ORTHO05D005599 3.0e-23 115.5 71 73.2
SHI14427 Sapria himalayana HOM05D000030 ORTHO05D000009 6.6e-23 114.4 130 52.3
HPP92_013017 Vanilla planifolia HOM05D002281 ORTHO05D005599 1.2e-16 93.6 54 83.3
arahy.Tifrunner.gnm1.ann1.57298L Arachis hypogaea HOM05D002281 ORTHO05D005599 1.7e-15 89.7 99 53.5
QL06p040095 Quercus lobata HOM05D002281 ORTHO05D005599 6.9e-12 77.8 77 53.2
Ah.06g188760 Amaranthus hybridus HOM05D002281 ORTHO05D006774 4.2e-09 68.6 142 35.2
vmacro19964 Vaccinium macrocarpon HOM05D002281 ORTHO05D005599 8.7e-07 60.8 32 84.4


User provided reference genes

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