Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1341.6 629 100.0
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1253.4 634 92.0
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1217.6 627 89.8
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1132.5 624 82.4
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1127.1 630 79.8
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1126.3 658 79.2
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1125.9 605 84.5
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1122.5 634 80.9
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1120.5 633 80.3
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1114.0 615 80.7
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1114.0 633 80.6
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1113.6 633 80.7
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1109.4 625 79.4
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1107.4 637 79.1
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1106.7 636 79.2
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1106.7 623 80.1
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1105.9 628 79.9
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1104.7 611 81.3
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1100.1 621 80.5
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1100.1 627 80.5
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1098.2 623 80.6
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1098.2 626 79.4
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1097.4 623 80.1
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1097.4 623 80.6
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1095.9 635 78.0
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1095.1 611 81.0
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1094.0 622 78.8
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1092.4 638 77.6
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1091.3 624 78.5
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1091.3 623 79.1
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1090.1 624 79.6
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1088.6 641 77.8
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1088.6 621 79.4
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1088.6 601 81.2
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 635 79.7
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1085.1 626 79.2
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1083.9 626 78.9
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1080.9 623 79.1
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1080.1 624 78.5
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 625 78.2
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1078.2 611 79.9
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 4.3e-312 1073.5 624 78.2
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 4.3e-312 1073.5 601 79.7
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 2.2e-311 1071.6 632 77.4
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 3.0e-311 1071.2 611 79.5
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 8.6e-311 1069.7 630 76.8
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.1e-310 1069.3 632 77.1
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.0e-308 1062.8 639 76.2
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 1.2e-307 1059.3 612 78.4
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 4.4e-307 1057.4 755 66.4
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 1.7e-306 1055.4 612 78.6
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 2.2e-306 1055.0 596 80.7
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 4.9e-306 1053.9 649 73.7
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 2.7e-304 1048.1 628 75.3
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 3.5e-304 1047.7 627 75.1
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 4.6e-304 1047.3 630 75.7
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 7.8e-304 1046.6 628 75.2
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 1.0e-303 1046.2 610 76.6
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.0e-303 1046.2 627 75.6
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 1.3e-303 1045.8 628 75.2
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 1.3e-303 1045.8 628 75.2
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 1.7e-303 1045.4 611 76.8
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 1.7e-303 1045.4 841 60.4
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 3.0e-303 1044.6 629 75.4
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 3.9e-303 1044.3 598 79.3
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 5.0e-303 1043.9 597 80.1
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 1.1e-302 1042.7 611 76.4
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 2.5e-302 1041.6 629 74.9
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 4.3e-302 1040.8 610 76.6
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 2.3e-300 1035.0 638 73.5
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 4.0e-300 1034.2 625 74.9
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 9.8e-299 1029.6 612 76.6
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 2.9e-298 1028.1 638 73.2
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.4e-297 1025.8 595 77.0
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 3.5e-296 1021.1 633 75.7
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 1.7e-295 1018.8 623 73.5
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 8.6e-295 1016.5 674 70.2
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 8.6e-295 1016.5 623 73.0
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.6e-291 1005.0 741 65.6
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 9.2e-289 996.5 633 73.8
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 1.5e-283 979.2 590 74.7
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.3e-282 976.1 604 74.7
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.1e-280 968.8 669 69.1
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 2.1e-280 968.8 556 78.6
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 1.7e-279 965.7 561 78.8
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.6e-277 959.1 669 68.5
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.9e-270 935.6 532 80.1
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.1e-269 932.2 567 76.2
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 8.1e-269 930.2 552 77.5
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.2e-265 918.3 612 70.3
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 3.2e-265 918.3 532 79.3
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 4.2e-265 917.9 548 75.4
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 7.1e-265 917.1 535 78.7
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.6e-264 916.0 586 72.5
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 4.3e-262 907.9 622 69.1
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 4.3e-262 907.9 571 73.9
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 7.4e-262 907.1 608 70.9
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 3.6e-261 904.8 611 70.5
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.5e-248 861.7 608 67.8
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 3.7e-245 851.7 601 64.1
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 1.3e-242 843.2 597 62.5
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.9e-226 788.9 604 59.8
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 2.1e-224 782.7 490 72.2
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.2e-221 772.7 614 58.0
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 8.2e-213 744.2 556 61.9
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 4.8e-205 718.4 454 73.1
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 4.3e-193 678.7 410 74.9
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.6e-187 660.2 457 68.5
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 6.8e-183 644.8 380 77.1
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 9.5e-177 624.4 353 80.7
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.2e-174 617.5 422 69.0
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 5.7e-129 465.7 462 52.6
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 1.5e-126 457.6 246 80.1
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 2.5e-116 423.7 238 81.9
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 8.8e-90 335.5 202 75.7
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.8e-82 311.2 188 72.3
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 1.3e-80 305.1 170 84.1
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 4.4e-73 280.0 219 62.6
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 7.0e-63 246.1 122 87.7
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 1.9e-60 238.0 130 80.8
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 9.5e-52 209.1 160 59.4
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.6e-49 201.1 160 58.8
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.8e-49 199.9 339 35.7
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 2.1e-46 191.4 106 83.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 2.6e-41 174.5 121 62.8
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.7e-40 171.8 83 89.2
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.8e-34 151.8 103 70.9
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 8.4e-32 142.9 87 73.6
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.6e-30 138.7 87 73.6
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.6e-30 138.7 87 73.6
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.5e-28 132.1 150 49.3
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 5.6e-28 130.2 220 35.5
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 7.4e-28 129.8 66 86.4
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.9e-24 117.9 82 69.5
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 6.0e-22 110.2 408 24.8
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 1.3e-21 109.0 51 90.2
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 2.3e-21 108.2 78 73.1
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 3.0e-21 107.8 234 29.5
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.3e-20 104.0 56 82.1
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.3e-20 104.0 56 83.9
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.3e-20 104.0 56 82.1
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 2.8e-19 101.3 221 26.2
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.2e-19 100.1 56 80.4
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.7e-16 92.0 79 57.0
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 4.9e-16 90.5 65 63.1
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.5e-16 90.1 51 80.4
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.5e-16 90.1 51 80.4
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 2.5e-15 88.2 79 55.7
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.5e-15 87.0 138 38.4
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 2.6e-09 68.2 34 70.6
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 1.1e-07 62.8 305 25.9
Gorai.009G221300 Gossypium raimondii HOM05D006117 ORTHO05D007996 1.6e-06 58.9 306 25.8
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 4.6e-06 57.4 258 23.6
Gohir.A05G211300 Gossypium hirsutum HOM05D006117 ORTHO05D007996 7.9e-06 56.6 325 25.2


User provided reference genes

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