Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0111201 Helianthus annuus HOM05D005189 ORTHO05D006093 1.7e-56 222.2 98 100.0
HanXRQChr04g0111211 Helianthus annuus HOM05D005189 ORTHO05D006093 7.4e-44 180.3 89 89.9
ECA236G2822 Erigeron canadensis HOM05D000141 ORTHO05D000780 1.6e-38 162.5 89 80.9
Lsat_1_v5_gn_8_164980 Lactuca sativa HOM05D005189 ORTHO05D006093 1.6e-38 162.5 89 78.7
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 2.7e-38 161.8 83 85.5
THA.LOC104801289 Tarenaya hassleriana HOM05D005189 ORTHO05D006093 2.0e-36 155.6 89 76.4
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 6.3e-35 150.6 89 74.2
CSS0031632 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 2.4e-34 148.7 100 70.0
Duzib128G0399 Durio zibethinus HOM05D005189 ORTHO05D006093 2.4e-34 148.7 100 66.0
QL06p006883 Quercus lobata HOM05D005189 ORTHO05D006093 2.4e-34 148.7 100 64.0
CSS0046497 Camellia sinensis var. sinensis HOM05D005189 ORTHO05D006093 5.3e-34 147.5 100 69.0
Cfa010639 Carpinus fangiana HOM05D005189 ORTHO05D006093 5.3e-34 147.5 100 66.0
Aa31LG5G1890 Aethionema arabicum HOM05D005189 ORTHO05D006093 9.1e-34 146.7 100 68.0
Dinv10045 Davidia involucrata HOM05D003197 ORTHO05D006093 9.1e-34 146.7 100 67.0
Potri.002G201200 Populus trichocarpa HOM05D005189 ORTHO05D006093 9.1e-34 146.7 100 64.0
Dinv33081 Davidia involucrata HOM05D005189 ORTHO05D006093 1.2e-33 146.4 89 73.0
Gohir.D11G168500 Gossypium hirsutum HOM05D005189 ORTHO05D006093 1.2e-33 146.4 100 65.0
Thecc.05G192400 Theobroma cacao HOM05D005189 ORTHO05D006093 1.5e-33 146.0 100 66.0
Thhalv10028689m.g Eutrema salsugineum HOM05D005189 ORTHO05D006093 2.0e-33 145.6 100 68.0
Gohir.A11G162200 Gossypium hirsutum HOM05D005189 ORTHO05D006093 2.0e-33 145.6 100 65.0
Gorai.007G180000 Gossypium raimondii HOM05D005189 ORTHO05D006093 2.0e-33 145.6 100 65.0
AT4G02220 Arabidopsis thaliana HOM05D005189 ORTHO05D006093 2.6e-33 145.2 100 68.0
CiPaw.01G112900 Carya illinoinensis HOM05D005189 ORTHO05D006093 2.6e-33 145.2 89 70.8
AL6G50910 Arabidopsis lyrata HOM05D005189 ORTHO05D006093 3.4e-33 144.8 100 68.0
arahy.Tifrunner.gnm1.ann1.ALS4S9 Arachis hypogaea HOM05D005189 ORTHO05D006093 4.5e-33 144.4 89 69.7
arahy.Tifrunner.gnm1.ann1.3WZ8U6 Arachis hypogaea HOM05D005189 ORTHO05D006093 5.9e-33 144.1 89 69.7
arahy.Tifrunner.gnm1.ann1.5FY99X Arachis hypogaea HOM05D005189 ORTHO05D006093 5.9e-33 144.1 89 69.7
CAN.G1987.2 Capsicum annuum HOM05D005189 ORTHO05D006093 7.7e-33 143.7 89 67.4
Sp6g02120 Schrenkiella parvula HOM05D005189 ORTHO05D006093 7.7e-33 143.7 100 67.0
TAR365G0047 Trochodendron aralioides HOM05D005189 ORTHO05D006093 7.7e-33 143.7 100 63.0
Aqoxy2G02861 Aquilegia oxysepala HOM05D005189 ORTHO05D006093 1.0e-32 143.3 100 65.0
A09p01690 Brassica napus HOM05D005189 ORTHO05D006093 1.0e-32 143.3 89 71.9
Phvul.011G074000 Phaseolus vulgaris HOM05D005189 ORTHO05D006093 1.0e-32 143.3 89 68.5
TPR.G23365 Trifolium pratense HOM05D005189 ORTHO05D006093 1.0e-32 143.3 89 69.7
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 1.3e-32 142.9 100 63.0
arahy.Tifrunner.gnm1.ann1.U1QXXC Arachis hypogaea HOM05D005189 ORTHO05D006093 1.3e-32 142.9 89 68.5
arahy.Tifrunner.gnm1.ann1.ZR0QLK Arachis hypogaea HOM05D005189 ORTHO05D006093 1.3e-32 142.9 89 68.5
BolC9t53111H Brassica oleracea HOM05D005189 ORTHO05D006093 1.3e-32 142.9 89 71.9
Sc05g0003490 Simmondsia chinensis HOM05D005189 ORTHO05D006093 1.3e-32 142.9 89 66.3
Lj6g0027180 Lotus japonicus HOM05D005189 ORTHO05D006093 1.7e-32 142.5 89 66.3
C09p01760 Brassica napus HOM05D005189 ORTHO05D006093 2.9e-32 141.7 89 70.8
BraA09t35824Z Brassica rapa HOM05D005189 ORTHO05D006093 2.9e-32 141.7 89 70.8
Carub.0006s3494 Capsella rubella HOM05D005189 ORTHO05D006093 2.9e-32 141.7 100 66.0
CARHR250440 Cardamine hirsuta HOM05D005189 ORTHO05D006093 2.9e-32 141.7 100 66.0
Nn8g40249 Nelumbo nucifera HOM05D005189 ORTHO05D006093 2.9e-32 141.7 89 70.8
arahy.Tifrunner.gnm1.ann1.4RF6J7 Arachis hypogaea HOM05D005189 ORTHO05D006093 3.8e-32 141.4 89 68.5
BcaC04g24048 Brassica carinata HOM05D005189 ORTHO05D006093 3.8e-32 141.4 89 70.8
CAN.G726.22 Capsicum annuum HOM05D005189 ORTHO05D006093 3.8e-32 141.4 89 66.3
Cc01_g21150 Coffea canephora HOM05D005189 ORTHO05D006093 3.8e-32 141.4 100 62.0
BcaB01g02068 Brassica carinata HOM05D005189 ORTHO05D006093 5.0e-32 141.0 89 70.8
Psat3g030640 Pisum sativum HOM05D005189 ORTHO05D006093 5.0e-32 141.0 92 67.4
Medtr7g105630 Medicago truncatula HOM05D005189 ORTHO05D006093 6.5e-32 140.6 89 68.5
TPR.G32201 Trifolium pratense HOM05D005189 ORTHO05D006093 8.5e-32 140.2 89 68.5
Ciclev10020359m.g Citrus clementina HOM05D005189 ORTHO05D006093 1.1e-31 139.8 100 62.0
Eucgr.D00103 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.9e-31 139.0 88 67.0
PGR044G0984 Punica granatum HOM05D005189 ORTHO05D006093 1.9e-31 139.0 89 67.4
PGR047G0002 Punica granatum HOM05D005189 ORTHO05D006093 1.9e-31 139.0 89 67.4
GSVIVG01028059001 Vitis vinifera HOM05D005189 ORTHO05D006093 2.5e-31 138.7 89 67.4
Os03g0300200 Oryza sativa ssp. japonica HOM05D005189 ORTHO05D006093 3.2e-31 138.3 89 66.3
EL10Ac2g03409 Beta vulgaris HOM05D005189 ORTHO05D006093 4.2e-31 137.9 89 67.4
Ca_09036_v3 Cicer arietinum L. HOM05D006431 ORTHO05D007918 4.2e-31 137.9 92 64.1
Solyc08g076440.4 Solanum lycopersicum HOM05D005189 ORTHO05D006093 4.2e-31 137.9 89 65.2
Sopen08g025020 Solanum pennellii HOM05D005189 ORTHO05D006093 4.2e-31 137.9 89 65.2
Oeu008336.1 Olea europaea HOM05D005189 ORTHO05D006093 5.5e-31 137.5 89 66.3
Peaxi162Scf00170g00624 Petunia axillaris HOM05D005189 ORTHO05D006093 7.2e-31 137.1 89 65.2
Cpa.g.sc151.36 Carica papaya HOM05D005189 ORTHO05D006093 9.4e-31 136.7 89 70.8
Nitab4.5_0000809g0080 Nicotiana tabacum HOM05D005189 ORTHO05D006093 9.4e-31 136.7 89 66.3
Migut.D00121 Erythranthe guttata HOM05D005189 ORTHO05D006093 1.2e-30 136.3 89 65.2
Sabra02G0157700 Salix brachista HOM05D005189 ORTHO05D006093 1.2e-30 136.3 118 53.4
TWI23G0603 Tripterygium wilfordii HOM05D005189 ORTHO05D006093 1.2e-30 136.3 89 65.2
PSO782G1813 Papaver somniferum HOM05D005189 ORTHO05D006093 2.1e-30 135.6 90 66.7
Zm00001eb396540 Zea mays HOM05D005189 ORTHO05D006093 2.1e-30 135.6 94 62.8
MSTRG.13027 Avicennia marina HOM05D005189 ORTHO05D006093 3.6e-30 134.8 89 64.0
Lalb_Chr01g0008881 Lupinus albus HOM05D005189 ORTHO05D006093 3.6e-30 134.8 92 65.2
Zm00001eb013970 Zea mays HOM05D005189 ORTHO05D006093 3.6e-30 134.8 89 65.2
CDE02G1252 Ceratophyllum demersum HOM05D005189 ORTHO05D006093 4.7e-30 134.4 89 67.4
MELO3C015632.2 Cucumis melo HOM05D005189 ORTHO05D006093 4.7e-30 134.4 89 66.3
SalBow6G1077 Salvia bowleyana HOM05D005189 ORTHO05D006093 4.7e-30 134.4 89 67.4
ClCG03G014110 Citrullus lanatus HOM05D005189 ORTHO05D006093 6.1e-30 134.0 89 66.3
DCAR_005781 Daucus carota HOM05D005189 ORTHO05D006093 6.1e-30 134.0 89 67.4
PGSC0003DMG400014794 Solanum tuberosum HOM05D005189 ORTHO05D006093 6.1e-30 134.0 89 64.0
Zm00001eb265340 Zea mays HOM05D005189 ORTHO05D006093 6.1e-30 134.0 89 62.9
CsaV3_1G042140 Cucumis sativus L. HOM05D005189 ORTHO05D006093 7.9e-30 133.7 89 66.3
Lj1g0024820 Lotus japonicus HOM05D005189 ORTHO05D006093 7.9e-30 133.7 89 65.2
AUR62024701 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.4e-29 132.9 89 66.3
Glyma.09G081700 Glycine max HOM05D005189 ORTHO05D006093 1.8e-29 132.5 92 63.0
Glyma.12G070400 Glycine max HOM05D005189 ORTHO05D006093 2.3e-29 132.1 89 64.0
DCAR_006919 Daucus carota HOM05D005189 ORTHO05D006093 3.9e-29 131.3 89 66.3
PSO765G0055 Papaver somniferum HOM05D005189 ORTHO05D006093 3.9e-29 131.3 89 62.9
Prupe.4G131100 Prunus persica HOM05D005189 ORTHO05D006093 3.9e-29 131.3 88 65.9
VMungo0464G0625 Vigna mungo HOM05D005189 ORTHO05D006093 3.9e-29 131.3 92 62.0
SGA_v2.0_scaffold334G49031 Striga asiatica HOM05D000141 ORTHO05D000780 5.1e-29 131.0 81 67.9
MD05G1235200 Malus domestica HOM05D005189 ORTHO05D006093 6.7e-29 130.6 88 65.9
AUR62011856 Chenopodium quinoa HOM05D005189 ORTHO05D006093 1.1e-28 129.8 89 64.0
Sed0013075 Sechium edule HOM05D005189 ORTHO05D006093 1.5e-28 129.4 89 65.2
HPP92_013737 Vanilla planifolia HOM05D005189 ORTHO05D006093 2.0e-28 129.0 89 64.0
MD10G1211200 Malus domestica HOM05D005189 ORTHO05D006093 7.4e-28 127.1 88 61.4
Zm00001eb312720 Zea mays HOM05D005189 ORTHO05D006093 1.7e-27 125.9 82 64.6
unitig_22.g5230 Utricularia gibba HOM05D005189 ORTHO05D006093 2.2e-27 125.6 89 61.8
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 1.4e-26 122.9 73 72.6
Manes.03G058600 Manihot esculenta HOM05D005189 ORTHO05D006093 2.0e-25 119.0 97 56.7
Manes.05G000401 Manihot esculenta HOM05D005189 ORTHO05D006093 2.0e-25 119.0 97 56.7
RcHm_v2.0_Chr5g0024021 Rosa chinensis HOM05D005189 ORTHO05D006093 2.0e-25 119.0 88 60.2
Atru.chr5.1082 Acer truncatum HOM05D005189 ORTHO05D006093 3.5e-25 118.2 100 57.0
FvH4_3g14570 Fragaria vesca HOM05D005189 ORTHO05D006093 4.5e-25 117.9 88 60.2
FAN16G0469 Fragaria x ananassa HOM05D005189 ORTHO05D006093 7.7e-25 117.1 88 59.1
FAN25G2462 Fragaria x ananassa HOM05D005189 ORTHO05D006093 3.8e-24 114.8 88 59.1
Mapoly0037s0138 Marchantia polymorpha HOM05D005189 ORTHO05D006093 6.5e-24 114.0 89 56.2
FAN21G1757 Fragaria x ananassa HOM05D005189 ORTHO05D006093 1.1e-23 113.2 89 59.6
Actinidia21022 Actinidia chinensis HOM05D005189 ORTHO05D006093 3.2e-23 111.7 83 59.0
AagrBONN_evm.TU.Sc2ySwM_117.3848 Anthoceros agrestis HOM05D005189 ORTHO05D006093 8.0e-22 107.1 99 52.5
Pp3c22_7380 Physcomitrium patens HOM05D005189 ORTHO05D006093 1.8e-21 105.9 89 50.6
ATR0665G541 Amborella trichopoda HOM05D005189 ORTHO05D006093 2.3e-21 105.5 102 51.0
Nitab4.5_0000529g0190 Nicotiana tabacum HOM05D005189 ORTHO05D006093 2.0e-20 102.4 89 53.9
EL10Ac9g21129 Beta vulgaris HOM05D005189 ORTHO05D006093 5.7e-20 100.9 89 52.8
Lj5C676G0 Lonicera japonica HOM05D005189 ORTHO05D006093 4.8e-19 97.8 54 77.8
DCAR_008439 Daucus carota HOM05D005189 ORTHO05D006093 1.1e-18 96.7 90 55.6
Lj1A21G66 Lonicera japonica HOM05D005189 ORTHO05D006093 1.8e-18 95.9 54 77.8
SEGI_10631 Sequoiadendron giganteum HOM05D005189 ORTHO05D006093 1.8e-18 95.9 89 53.9
SMO118G0558 Selaginella moellendorffii HOM05D005189 ORTHO05D006093 1.2e-17 93.2 98 46.9
Haze_03588 Corylus avellana HOM05D005189 ORTHO05D006093 7.7e-17 90.5 54 72.2
Oeu021746.1 Olea europaea HOM05D005189 ORTHO05D006093 7.7e-17 90.5 65 61.5
Pp3c25_650 Physcomitrium patens HOM05D005189 ORTHO05D006093 7.7e-17 90.5 89 44.9
Prupe.1G192100 Prunus persica HOM05D005189 ORTHO05D006093 3.8e-16 88.2 57 66.7
Rhsim13G0007900 Rhododendron simsii HOM05D005189 ORTHO05D006093 8.5e-16 87.0 54 70.4
FAN11G2688 Fragaria x ananassa HOM05D005189 ORTHO05D006093 2.3e-13 79.0 64 54.7
CBR_g22284 Chara braunii HOM05D005189 ORTHO05D006093 5.7e-12 74.3 111 33.3
DCAR_022674 Daucus carota HOM05D005189 ORTHO05D006093 5.7e-12 74.3 90 50.0
Zm00001eb129840 Zea mays HOM05D001670 ORTHO05D006093 2.9e-08 62.0 36 63.9
Zm00001eb306860 Zea mays HOM05D001670 ORTHO05D006093 2.9e-08 62.0 36 63.9
Zm00001eb068830 Zea mays HOM05D005189 ORTHO05D006093 1.1e-07 60.1 30 73.3
arahy.Tifrunner.gnm1.ann1.V7ULXX Arachis hypogaea HOM05D005189 ORTHO05D006093 7.2e-07 57.4 36 58.3


User provided reference genes

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