Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.6e-172 609.4 309 100.0
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 1.6e-132 476.5 318 78.6
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 3.8e-126 455.3 313 74.1
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.2e-124 450.3 322 72.0
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 6.6e-123 444.5 316 70.3
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 2.5e-122 442.6 308 71.4
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 5.6e-122 441.4 306 71.2
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 9.6e-122 440.7 310 71.9
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 2.1e-121 439.5 315 69.8
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 2.1e-121 439.5 310 71.6
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 2.8e-121 439.1 316 71.2
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 3.6e-121 438.7 308 71.4
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 4.8e-121 438.3 309 70.6
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.8e-121 438.3 308 71.1
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 4.8e-121 438.3 300 74.0
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.8e-120 436.4 300 73.7
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 1.8e-120 436.4 316 69.3
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.8e-120 436.4 308 70.8
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 2.4e-120 436.0 317 69.4
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 3.1e-120 435.6 317 69.7
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 4.0e-120 435.3 321 67.0
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.3e-120 434.9 319 69.9
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 6.9e-120 434.5 315 68.9
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 9.0e-120 434.1 318 69.8
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 9.0e-120 434.1 313 70.9
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 1.2e-119 433.7 312 71.2
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.2e-119 433.7 309 69.6
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.0e-119 433.0 314 70.1
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 2.6e-119 432.6 305 71.1
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 4.4e-119 431.8 309 70.2
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 5.8e-119 431.4 314 69.1
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 5.8e-119 431.4 312 72.4
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 7.6e-119 431.0 297 73.1
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.7e-118 429.9 319 69.3
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 1.7e-118 429.9 315 68.3
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.7e-118 429.9 316 68.0
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 2.2e-118 429.5 311 66.9
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.9e-118 429.1 319 69.3
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 6.4e-118 427.9 306 69.9
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 8.4e-118 427.6 308 66.9
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.1e-117 427.2 326 67.2
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.4e-117 426.8 308 66.6
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.4e-117 426.8 310 70.6
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.9e-117 426.4 311 67.8
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.4e-117 426.0 304 70.7
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.2e-117 425.6 320 66.9
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 3.2e-117 425.6 320 66.9
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 5.4e-117 424.9 310 66.5
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 7.1e-117 424.5 304 69.1
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 9.3e-117 424.1 315 67.6
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.6e-116 423.3 309 66.7
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 2.7e-116 422.5 310 70.6
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.5e-116 422.2 309 67.6
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 3.5e-116 422.2 310 69.0
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.5e-116 422.2 320 66.6
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 4.6e-116 421.8 313 67.7
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.0e-115 420.6 314 69.4
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.3e-115 420.2 311 66.9
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.7e-115 419.9 310 67.4
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 1.7e-115 419.9 306 68.6
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 2.3e-115 419.5 315 69.5
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 3.0e-115 419.1 312 68.6
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 3.9e-115 418.7 320 66.6
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 5.1e-115 418.3 312 68.9
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 5.1e-115 418.3 310 66.1
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 5.1e-115 418.3 307 69.1
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 8.7e-115 417.5 315 69.2
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.9e-114 416.4 310 67.7
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.9e-114 416.4 305 67.9
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 1.9e-114 416.4 304 67.1
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 3.3e-114 415.6 316 68.0
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 9.6e-114 414.1 312 65.4
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 2.8e-113 412.5 316 65.8
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 8.1e-113 411.0 338 62.7
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.4e-112 410.2 310 66.8
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 6.9e-112 407.9 304 69.1
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 9.0e-112 407.5 313 68.7
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 2.6e-111 406.0 316 63.6
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 3.4e-111 405.6 317 63.7
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 3.4e-111 405.6 316 63.9
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 7.6e-111 404.4 312 65.1
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 1.3e-110 403.7 316 63.0
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.7e-110 403.3 310 62.9
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.7e-110 403.3 336 62.2
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.8e-110 402.1 303 67.0
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 2.4e-109 399.4 312 63.1
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 6.7e-107 391.3 310 64.2
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 8.1e-105 384.4 282 68.1
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.1e-104 384.0 322 61.5
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 7.6e-103 377.9 313 63.6
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 4.6e-100 368.6 329 59.0
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 2.5e-98 362.8 307 60.6
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 7.4e-98 361.3 308 60.7
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.1e-96 357.5 310 61.9
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.2e-95 354.0 377 53.1
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 5.8e-95 351.7 234 80.3
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 1.3e-94 350.5 275 64.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.3e-94 350.5 279 64.2
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 2.9e-94 349.4 302 59.3
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 4.6e-92 342.0 299 56.9
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.5e-90 336.3 226 72.1
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 7.4e-90 334.7 230 71.7
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 5.3e-88 328.6 302 55.3
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 2.6e-87 326.2 300 58.3
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 5.9e-87 325.1 300 56.0
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 5.7e-82 308.5 271 59.8
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 1.4e-80 303.9 352 48.6
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.0e-75 286.2 233 63.1
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.1e-69 267.7 197 67.5
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.1e-66 257.7 337 45.4
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.7e-65 252.7 201 64.2
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 4.8e-65 252.3 173 71.7
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 7.0e-64 248.4 149 81.9
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 2.2e-62 243.4 187 65.2
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 5.7e-50 202.2 214 50.9
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.5e-47 193.0 227 51.1
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 6.1e-44 182.2 283 41.0
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.7e-42 175.6 188 52.7
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 4.1e-40 169.5 116 70.7
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.6e-39 167.5 303 36.6
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 2.0e-39 167.2 150 58.0
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 7.5e-34 148.7 122 68.0
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 1.6e-31 141.0 301 35.9
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 1.3e-25 121.3 121 58.7
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 1.3e-22 111.3 164 44.5
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 8.1e-20 102.1 142 40.8
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.4e-19 101.3 121 52.1
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 3.4e-18 96.7 130 47.7
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 5.8e-18 95.9 107 49.5
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 2.9e-17 93.6 75 62.7
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 3.8e-17 93.2 116 47.4
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 8.4e-17 92.0 80 58.8
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 5.4e-16 89.4 67 64.2
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 9.2e-16 88.6 62 75.8
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 2.7e-15 87.0 67 62.7
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 6.6e-14 82.4 81 56.8
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 8.6e-14 82.0 89 49.4
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 8.9e-11 72.0 83 48.2
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.3e-09 68.2 60 55.0


User provided reference genes

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