Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 1.1e-122 443.4 227 100.0
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 5.3e-85 318.2 246 71.5
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 1.9e-71 273.1 219 66.7
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.5e-71 272.7 248 64.5
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 1.3e-70 270.4 220 65.5
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 4.1e-69 265.4 220 64.5
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 1.2e-68 263.8 216 64.8
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 1.2e-68 263.8 220 63.6
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 1.5e-68 263.5 240 62.5
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 3.4e-68 262.3 239 60.3
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 4.5e-68 261.9 230 63.0
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 1.0e-67 260.8 237 61.2
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 1.3e-67 260.4 239 59.4
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 1.7e-67 260.0 264 58.0
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 2.2e-67 259.6 237 59.1
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 2.5e-66 256.1 215 63.7
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 3.2e-66 255.8 222 63.5
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 5.5e-66 255.0 237 61.6
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 5.5e-66 255.0 225 63.6
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 9.3e-66 254.2 233 60.1
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 2.7e-65 252.7 235 59.6
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 4.6e-65 251.9 226 62.4
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 7.9e-65 251.1 234 58.1
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 7.9e-65 251.1 216 61.1
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 1.3e-64 250.4 214 64.5
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 2.3e-64 249.6 232 60.8
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 2.3e-64 249.6 211 62.6
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 3.9e-64 248.8 226 63.3
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 3.9e-64 248.8 220 61.8
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 5.1e-64 248.4 237 59.5
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.1e-63 247.3 237 57.8
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 1.5e-63 246.9 233 60.5
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 1.5e-63 246.9 217 59.9
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.3e-63 245.7 237 57.4
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 3.3e-63 245.7 237 57.4
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 9.7e-63 244.2 237 59.1
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 1.6e-62 243.4 217 59.4
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 3.1e-61 239.2 239 55.2
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 4.1e-61 238.8 241 56.0
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 4.1e-61 238.8 223 59.2
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 5.3e-61 238.4 238 58.8
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 5.3e-61 238.4 246 56.9
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 5.3e-61 238.4 219 58.9
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 1.5e-60 236.9 240 58.8
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 1.5e-60 236.9 234 56.8
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 2.6e-60 236.1 239 55.6
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 2.6e-60 236.1 208 60.6
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 4.5e-60 235.3 224 57.6
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 7.7e-60 234.6 213 57.3
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 7.7e-60 234.6 241 54.8
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.7e-59 233.4 218 57.3
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.7e-59 233.4 241 54.8
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 1.7e-59 233.4 217 55.8
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 2.9e-59 232.6 217 59.0
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 2.9e-59 232.6 208 60.6
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 5.0e-59 231.9 209 58.9
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 5.0e-59 231.9 213 62.4
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 1.4e-58 230.3 241 53.5
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.4e-58 230.3 218 59.6
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 1.9e-58 229.9 220 55.5
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 2.5e-58 229.6 234 56.8
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 7.2e-58 228.0 234 55.1
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 9.4e-58 227.6 238 54.6
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 1.2e-57 227.3 210 59.0
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 2.7e-57 226.1 241 53.1
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 2.7e-57 226.1 241 55.2
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 3.6e-57 225.7 228 55.3
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 6.1e-57 224.9 211 58.3
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 6.1e-57 224.9 233 56.2
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 7.9e-57 224.6 228 56.6
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 7.9e-57 224.6 228 56.6
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 7.9e-57 224.6 228 56.6
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 1.4e-56 223.8 233 55.8
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.4e-56 223.8 233 55.4
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 2.3e-56 223.0 228 58.3
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 3.0e-56 222.6 211 57.8
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 3.9e-56 222.2 241 53.1
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 5.1e-56 221.9 236 55.1
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 5.1e-56 221.9 229 56.3
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 6.7e-56 221.5 225 56.9
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 8.8e-56 221.1 224 55.4
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 2.0e-55 219.9 227 55.5
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 2.0e-55 219.9 353 42.5
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 2.5e-55 219.5 212 56.1
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 4.3e-55 218.8 235 54.5
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 5.7e-55 218.4 222 55.9
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 7.4e-55 218.0 215 59.1
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 7.4e-55 218.0 236 54.7
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.3e-54 217.2 233 52.8
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 2.2e-54 216.5 234 53.0
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 2.8e-54 216.1 215 53.5
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 6.3e-54 214.9 252 50.4
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 8.2e-54 214.5 220 55.0
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 2.4e-53 213.0 227 55.5
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 2.0e-52 209.9 226 53.1
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.4e-52 209.1 228 53.1
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.3e-51 207.2 224 54.9
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.7e-51 206.8 224 54.9
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.9e-51 206.1 208 53.8
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 2.9e-51 206.1 297 45.8
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 3.8e-51 205.7 208 55.3
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 5.0e-51 205.3 230 53.9
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 5.0e-51 205.3 224 54.5
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 8.5e-51 204.5 208 58.7
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 1.1e-50 204.1 206 56.3
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 2.5e-50 203.0 245 51.0
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 4.2e-50 202.2 205 56.1
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 7.2e-50 201.4 204 55.4
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 9.4e-50 201.1 216 52.3
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 9.4e-50 201.1 213 54.0
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 3.6e-49 199.1 158 68.4
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.0e-48 197.6 202 55.0
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 3.9e-48 195.7 167 66.5
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 6.7e-48 194.9 253 47.4
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.1e-47 194.1 160 64.4
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 8.2e-46 188.0 146 68.5
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 9.1e-45 184.5 239 45.2
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 1.2e-44 184.1 162 61.1
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 2.2e-43 179.9 170 61.2
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 2.5e-42 176.4 214 46.7
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 3.2e-42 176.0 200 52.0
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 3.2e-42 176.0 191 54.5
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.6e-41 173.7 234 44.9
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 4.4e-39 165.6 205 48.3
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.4e-39 165.6 162 56.8
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 1.3e-38 164.1 129 65.9
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 6.3e-38 161.8 135 65.9
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 1.9e-34 150.2 190 47.4
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 7.2e-34 148.3 187 47.6
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 1.6e-33 147.1 187 47.1
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 1.6e-33 147.1 187 47.1
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 3.0e-32 142.9 358 32.1
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 6.8e-32 141.7 209 42.6
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 9.8e-31 137.9 185 47.6
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.5e-23 114.0 191 44.0
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 2.8e-22 109.8 219 39.3
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 6.3e-22 108.6 168 39.3
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.9e-18 97.1 156 41.7
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 5.6e-18 95.5 102 52.9
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 2.8e-17 93.2 83 59.0
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 1.5e-15 87.4 176 33.0
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 9.8e-15 84.7 256 30.1
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.9e-14 82.4 54 66.7
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 8.3e-14 81.6 63 68.3
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 1.6e-12 77.4 85 51.8
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 4.6e-12 75.9 161 33.5
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 5.9e-12 75.5 56 67.9
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 5.9e-12 75.5 55 65.5
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 1.9e-10 70.5 249 29.7
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 5.6e-10 68.9 44 72.7
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 8.0e-09 65.1 97 45.4
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 2.3e-08 63.5 99 40.4
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 9.8e-07 58.2 107 38.3
MCO02G050 Micromonas commoda HOM05D000175 ORTHO05D000481 2.9e-06 56.6 62 43.5
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 4.9e-06 55.8 65 41.5
PRCOL_00000327 Prasinoderma coloniale HOM05D000175 ORTHO05D000481 6.4e-06 55.5 62 41.9
Nn2g13067 Nelumbo nucifera HOM05D005011 ORTHO05D006443 8.3e-06 55.1 64 43.8


User provided reference genes

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