Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0110041 Helianthus annuus HOM05D007944 ORTHO05D010014 2.4e-23 111.3 55 100.0
Lsat_1_v5_gn_1_14420 Lactuca sativa HOM05D007944 ORTHO05D010014 1.9e-20 101.7 55 87.3
Gohir.A03G070400 Gossypium hirsutum HOM05D007944 ORTHO05D010014 5.5e-20 100.1 55 87.3
Gohir.D03G096800 Gossypium hirsutum HOM05D007944 ORTHO05D010014 1.6e-19 98.6 55 85.5
Gorai.003G101600 Gossypium raimondii HOM05D007944 ORTHO05D010014 1.6e-19 98.6 55 85.5
Duzib084G0160 Durio zibethinus HOM05D007944 ORTHO05D010014 1.0e-18 95.9 55 83.6
Thecc.03G102900 Theobroma cacao HOM05D007944 ORTHO05D010014 1.0e-18 95.9 55 81.8
CSS0002657 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 3.0e-18 94.4 55 80.0
CSS0037671 Camellia sinensis var. sinensis HOM05D007944 ORTHO05D010014 3.0e-18 94.4 55 80.0
COL.COLO4_24344 Corchorus olitorius HOM05D007944 ORTHO05D010014 5.1e-18 93.6 55 78.2
THA.LOC104818349 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 6.7e-18 93.2 55 78.2
Hma1.2p1_0060F.1_g033020 Hydrangea macrophylla HOM05D007944 ORTHO05D010014 8.7e-18 92.8 55 76.4
PGR083G1417 Punica granatum HOM05D007944 ORTHO05D010014 1.5e-17 92.0 55 78.2
Manes.06G083900 Manihot esculenta HOM05D007944 ORTHO05D010014 1.9e-17 91.7 55 76.4
GSVIVG01008105001 Vitis vinifera HOM05D007944 ORTHO05D010014 1.9e-17 91.7 55 76.4
Potri.015G058500 Populus trichocarpa HOM05D007944 ORTHO05D010014 2.5e-17 91.3 55 76.4
Ciclev10023235m.g Citrus clementina HOM05D007944 ORTHO05D010014 3.3e-17 90.9 55 76.4
PGSC0003DMG400024536 Solanum tuberosum HOM05D007944 ORTHO05D010014 7.4e-17 89.7 55 74.5
HanXRQChr02g0044781 Helianthus annuus HOM05D007944 ORTHO05D010014 4.8e-16 87.0 47 85.1
CiPaw.11G054400 Carya illinoinensis HOM05D007944 ORTHO05D010014 8.2e-16 86.3 55 74.5
THA.LOC109116171 Tarenaya hassleriana HOM05D007944 ORTHO05D010014 8.2e-16 86.3 55 70.9
TWI60G0934 Tripterygium wilfordii HOM05D007944 ORTHO05D010014 1.4e-15 85.5 55 74.5
AL6G18390 Arabidopsis lyrata HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 65.5
Carub.0006s0693 Capsella rubella HOM05D007944 ORTHO05D010014 2.4e-15 84.7 55 65.5
CANSAT56G0188 Cannabis sativa HOM05D007944 ORTHO05D010014 4.0e-15 84.0 55 72.7
Duzib205G1703 Durio zibethinus HOM05D007944 ORTHO05D010014 5.3e-15 83.6 55 74.5
BcaB01g05682 Brassica carinata HOM05D007944 ORTHO05D010014 9.0e-15 82.8 55 67.3
Prupe.5G206000 Prunus persica HOM05D007944 ORTHO05D010014 9.0e-15 82.8 55 74.5
A03p03550 Brassica napus HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 65.5
BraA03t09705Z Brassica rapa HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 65.5
Lalb_Chr13g0302811 Lupinus albus HOM05D007944 ORTHO05D010014 1.2e-14 82.4 55 69.1
BcaB01g05641 Brassica carinata HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 65.5
BolC3t12937H Brassica oleracea HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 65.5
CAN.G1228.17 Capsicum annuum HOM05D007944 ORTHO05D010014 1.5e-14 82.0 55 67.3
Lalb_Chr12g0197241 Lupinus albus HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 67.3
Phvul.003G184100 Phaseolus vulgaris HOM05D007944 ORTHO05D010014 2.6e-14 81.3 55 67.3
Sc12g0007040 Simmondsia chinensis HOM05D007944 ORTHO05D010014 2.6e-14 81.3 53 66.0
Migut.D01638 Erythranthe guttata HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 70.9
Glyma.05G020300 Glycine max HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 69.1
Glyma.17G079100 Glycine max HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 69.1
Nn3g17462 Nelumbo nucifera HOM05D007944 ORTHO05D010014 3.4e-14 80.9 55 72.7
MD06G1225800 Malus domestica HOM05D007944 ORTHO05D010014 4.5e-14 80.5 55 70.9
MD14G1212700 Malus domestica HOM05D007944 ORTHO05D010014 4.5e-14 80.5 55 70.9
AT5G08040 Arabidopsis thaliana HOM05D007944 ORTHO05D010014 5.8e-14 80.1 55 60.0
C03p04000 Brassica napus HOM05D007944 ORTHO05D010014 1.3e-13 79.0 55 63.6
Medtr4g109610 Medicago truncatula HOM05D007944 ORTHO05D010014 1.3e-13 79.0 55 67.3
TAR629G2843 Trochodendron aralioides HOM05D007944 ORTHO05D010014 1.3e-13 79.0 49 71.4
Psat4g047680 Pisum sativum HOM05D007944 ORTHO05D010014 1.7e-13 78.6 55 67.3
C02p03390 Brassica napus HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 61.8
BolC2t06301H Brassica oleracea HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 61.8
BraA02t04940Z Brassica rapa HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 61.8
CARHR205140 Cardamine hirsuta HOM05D007944 ORTHO05D010014 2.9e-13 77.8 53 60.4
Thhalv10015226m.g Eutrema salsugineum HOM05D007944 ORTHO05D010014 2.9e-13 77.8 55 60.0
BcaB05g21585 Brassica carinata HOM05D007944 ORTHO05D010014 3.8e-13 77.4 55 60.0
BcaC03g13205 Brassica carinata HOM05D007944 ORTHO05D010014 3.8e-13 77.4 55 61.8
Lj4g0027267 Lotus japonicus HOM05D007944 ORTHO05D010014 6.5e-13 76.6 55 65.5
Sp6g34910 Schrenkiella parvula HOM05D000813 ORTHO05D004282 8.4e-13 76.3 53 62.3
C09p68880 Brassica napus HOM05D007944 ORTHO05D010014 1.4e-12 75.5 55 58.2
RcHm_v2.0_Chr7g0183191 Rosa chinensis HOM05D007944 ORTHO05D010014 1.4e-12 75.5 55 63.6
Ca_21766_v3 Cicer arietinum L. HOM05D007944 ORTHO05D010014 1.9e-12 75.1 55 67.3
ClCG04G011750 Citrullus lanatus HOM05D007944 ORTHO05D010014 3.2e-12 74.3 49 67.3
MELO3C002035.2 Cucumis melo HOM05D007944 ORTHO05D010014 3.2e-12 74.3 49 67.3
Os12g0575200 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 3.2e-12 74.3 55 63.6
BcaB08g37295 Brassica carinata HOM05D007944 ORTHO05D010014 4.2e-12 73.9 55 60.0
BolC9t59634H Brassica oleracea HOM05D007944 ORTHO05D010014 7.1e-12 73.2 55 56.4
BraA10t44908Z Brassica rapa HOM05D007944 ORTHO05D010014 1.2e-11 72.4 52 57.7
Aa31LG3G18500 Aethionema arabicum HOM05D000813 ORTHO05D004282 2.7e-11 71.2 54 57.4
Aqoxy3G03680 Aquilegia oxysepala HOM05D007944 ORTHO05D010014 2.7e-11 71.2 55 65.5
FvH4_5g13750 Fragaria vesca HOM05D007944 ORTHO05D010014 2.7e-11 71.2 55 61.8
Sed0006151 Sechium edule HOM05D007944 ORTHO05D010014 3.5e-11 70.9 49 63.3
Os03g0603500 Oryza sativa ssp. japonica HOM05D007944 ORTHO05D010014 2.5e-09 64.7 55 61.8
A10p28590 Brassica napus HOM05D007944 ORTHO05D010014 5.7e-09 63.5 48 56.2
Pp3c3_35330 Physcomitrium patens HOM05D007944 ORTHO05D010014 5.7e-09 63.5 49 59.2
CsaV3_1G006040 Cucumis sativus L. HOM05D007944 ORTHO05D010014 9.7e-09 62.8 38 73.7
Sed0010401 Sechium edule HOM05D007944 ORTHO05D010014 9.7e-09 62.8 48 56.2
Pp3c12_23850 Physcomitrium patens HOM05D007944 ORTHO05D010014 1.6e-08 62.0 52 55.8
Actinidia18986 Actinidia chinensis HOM05D007944 ORTHO05D010014 2.0e-06 55.1 52 48.1
unitig_744.g24380 Utricularia gibba HOM05D007944 ORTHO05D010014 2.0e-06 55.1 83 41.0
Mapoly0138s0028 Marchantia polymorpha HOM05D007944 ORTHO05D010014 3.4e-06 54.3 46 56.5


User provided reference genes

Program Settings