Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.1e-87 326.6 168 100.0
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 1.5e-31 140.2 87 81.6
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.6e-22 110.2 89 59.6
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 8.3e-19 97.8 85 51.8
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 1.8e-18 96.7 90 52.2
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 2.4e-18 96.3 88 53.4
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 3.1e-18 95.9 88 53.4
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 7.0e-18 94.7 88 53.4
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 7.0e-18 94.7 88 53.4
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 2.0e-17 93.2 88 51.1
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.5e-17 92.4 88 52.3
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 4.5e-17 92.0 88 50.0
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 7.7e-17 91.3 88 51.1
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 7.7e-17 91.3 87 50.6
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 7.7e-17 91.3 88 52.3
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.0e-16 90.9 87 50.6
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.0e-16 90.9 87 50.6
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.7e-16 90.1 87 49.4
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.3e-16 89.7 88 48.9
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.3e-16 89.7 88 48.9
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 2.3e-16 89.7 127 42.5
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 2.3e-16 89.7 127 42.5
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 2.3e-16 89.7 89 51.7
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.0e-16 88.6 88 48.9
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.0e-16 88.6 88 48.9
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 5.0e-16 88.6 88 48.9
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 5.0e-16 88.6 101 48.5
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 5.0e-16 88.6 89 49.4
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 8.6e-16 87.8 95 46.3
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 8.6e-16 87.8 97 47.4
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 8.6e-16 87.8 99 49.5
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.1e-15 87.4 89 47.2
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.5e-15 87.0 104 48.1
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 1.5e-15 87.0 102 44.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.5e-15 87.0 89 53.9
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 1.5e-15 87.0 92 53.3
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.9e-15 86.7 88 50.0
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.9e-15 86.7 90 52.2
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.9e-15 86.7 90 51.1
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.5e-15 86.3 92 53.3
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 2.5e-15 86.3 92 54.3
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.5e-15 86.3 91 47.3
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 2.5e-15 86.3 91 47.3
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 4.3e-15 85.5 90 48.9
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 4.3e-15 85.5 88 50.0
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 7.3e-15 84.7 87 44.8
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 7.3e-15 84.7 87 47.1
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 7.3e-15 84.7 88 50.0
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 9.5e-15 84.3 89 49.4
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.2e-14 84.0 88 46.6
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 1.6e-14 83.6 87 46.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.6e-14 83.6 90 46.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 2.1e-14 83.2 90 48.9
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.1e-14 83.2 88 47.7
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 2.8e-14 82.8 92 46.7
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 3.6e-14 82.4 85 50.6
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 4.7e-14 82.0 88 44.3
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 4.7e-14 82.0 92 46.7
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 4.7e-14 82.0 87 51.7
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 6.1e-14 81.6 123 40.7
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.0e-13 80.9 89 46.1
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.0e-13 80.9 90 45.6
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.4e-13 80.5 91 47.3
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 1.4e-13 80.5 107 39.3
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 1.8e-13 80.1 96 41.7
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 1.8e-13 80.1 96 41.7
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 1.8e-13 80.1 94 46.8
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.3e-13 79.7 96 42.7
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 2.3e-13 79.7 89 43.8
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 3.0e-13 79.3 89 47.2
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 3.0e-13 79.3 96 42.7
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 3.0e-13 79.3 92 46.7
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 3.0e-13 79.3 87 48.3
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 4.0e-13 79.0 96 42.7
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 5.2e-13 78.6 98 48.0
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 5.2e-13 78.6 102 38.2
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 5.2e-13 78.6 88 44.3
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 6.8e-13 78.2 89 48.3
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 6.8e-13 78.2 87 47.1
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 6.8e-13 78.2 88 44.3
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 8.9e-13 77.8 99 38.4
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.2e-12 77.4 99 41.4
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 1.2e-12 77.4 89 48.3
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.5e-12 77.0 90 41.1
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 1.5e-12 77.0 90 41.1
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.5e-12 77.0 89 41.6
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.5e-12 77.0 102 37.3
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.5e-12 77.0 91 42.9
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.0e-12 76.6 92 44.6
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 2.0e-12 76.6 103 36.9
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 2.0e-12 76.6 91 42.9
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.0e-12 76.6 89 49.4
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.0e-12 76.6 100 37.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 2.6e-12 76.3 94 41.5
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 2.6e-12 76.3 92 40.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.6e-12 76.3 90 48.9
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 4.4e-12 75.5 88 47.7
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 5.7e-12 75.1 98 46.9
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 5.7e-12 75.1 87 43.7
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 5.7e-12 75.1 87 46.0
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 9.8e-12 74.3 89 44.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 9.8e-12 74.3 101 42.6
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.3e-11 73.9 88 44.3
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 2.9e-11 72.8 108 36.1
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 2.9e-11 72.8 105 38.1
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 3.7e-11 72.4 83 45.8
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 4.9e-11 72.0 105 38.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 8.3e-11 71.2 86 44.2
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.1e-10 70.9 93 44.1
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.1e-10 70.9 87 48.3
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.4e-10 70.5 87 48.3
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 1.4e-10 70.5 87 48.3
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 1.8e-10 70.1 89 42.7
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 4.1e-10 68.9 88 40.9
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 4.1e-10 68.9 89 40.4
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 5.4e-10 68.6 84 41.7
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 5.4e-10 68.6 87 40.2
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 7.0e-10 68.2 91 44.0
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 7.0e-10 68.2 88 44.3
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 9.2e-10 67.8 87 40.2
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.6e-09 67.0 87 40.2
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 2.7e-09 66.2 90 41.1
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 7.8e-09 64.7 98 33.7
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 1.7e-08 63.5 89 37.1
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 2.3e-08 63.2 87 37.9
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 6.6e-08 61.6 87 37.9
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 2.5e-07 59.7 87 36.8
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.8e-06 56.2 96 33.3
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 2.8e-06 56.2 90 33.3


User provided reference genes

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