Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 4.2e-47 191.0 98 100.0
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 2.0e-36 155.6 98 83.7
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 6.3e-35 150.6 100 79.0
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 8.2e-35 150.2 98 81.6
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 1.5e-33 146.0 100 76.0
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 79.6
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 2.0e-33 145.6 98 79.6
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 2.6e-33 145.2 99 78.8
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.6e-33 145.2 98 78.6
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 78.6
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 3.4e-33 144.8 98 78.6
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 4.5e-33 144.4 99 75.8
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 5.9e-33 144.1 98 78.6
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 5.9e-33 144.1 100 78.0
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 1.0e-32 143.3 98 77.6
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 1.3e-32 142.9 99 76.8
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.3e-32 142.9 98 77.6
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.3e-32 142.9 97 78.4
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 1.7e-32 142.5 100 75.0
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 2.2e-32 142.1 100 75.0
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 2.2e-32 142.1 100 75.0
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 74.5
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 74.5
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 2.2e-32 142.1 98 76.5
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 3.8e-32 141.4 98 73.5
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 3.8e-32 141.4 98 73.5
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 3.8e-32 141.4 98 73.5
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 3.8e-32 141.4 98 73.5
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 3.8e-32 141.4 98 73.5
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 3.8e-32 141.4 98 76.5
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 5.0e-32 141.0 98 75.5
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 5.0e-32 141.0 98 74.5
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 6.5e-32 140.6 98 72.4
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 6.5e-32 140.6 99 75.8
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 6.5e-32 140.6 100 77.0
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 6.5e-32 140.6 98 73.5
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 8.5e-32 140.2 98 73.5
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 8.5e-32 140.2 98 72.4
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 8.5e-32 140.2 98 72.4
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 8.5e-32 140.2 98 73.5
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 8.5e-32 140.2 98 73.5
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 1.1e-31 139.8 98 72.4
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.1e-31 139.8 98 72.4
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.4e-31 139.4 100 74.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 1.4e-31 139.4 100 74.0
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 1.4e-31 139.4 98 71.4
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 1.4e-31 139.4 100 75.0
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 1.9e-31 139.0 100 76.0
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 3.2e-31 138.3 98 71.4
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 3.2e-31 138.3 98 72.4
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 4.2e-31 137.9 98 72.4
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 4.2e-31 137.9 98 73.5
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 5.5e-31 137.5 98 70.4
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 5.5e-31 137.5 99 76.8
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 5.5e-31 137.5 100 75.0
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 5.5e-31 137.5 98 71.4
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 7.2e-31 137.1 98 71.4
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 7.2e-31 137.1 98 71.4
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 7.2e-31 137.1 98 70.4
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 7.2e-31 137.1 98 71.4
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 7.2e-31 137.1 98 71.4
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 7.2e-31 137.1 98 71.4
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 7.2e-31 137.1 98 74.5
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 7.2e-31 137.1 100 74.0
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 7.2e-31 137.1 98 71.4
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 9.4e-31 136.7 98 71.4
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 9.4e-31 136.7 98 74.5
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 1.2e-30 136.3 98 71.4
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 1.6e-30 136.0 98 72.4
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 1.6e-30 136.0 98 71.4
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 2.7e-30 135.2 99 70.7
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 2.7e-30 135.2 98 72.4
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 3.6e-30 134.8 99 69.7
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 3.6e-30 134.8 97 71.1
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 7.9e-30 133.7 98 69.4
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 7.9e-30 133.7 98 71.4
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 7.9e-30 133.7 98 71.4
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 7.9e-30 133.7 98 71.4
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 1.0e-29 133.3 98 68.4
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 1.4e-29 132.9 99 72.7
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 1.4e-29 132.9 99 69.7
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 1.4e-29 132.9 98 70.4
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 1.4e-29 132.9 98 72.4
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.4e-29 132.9 98 68.4
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.4e-29 132.9 98 68.4
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.8e-29 132.5 96 72.9
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 68.4
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 2.3e-29 132.1 98 72.4
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 3.0e-29 131.7 100 72.0
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 3.0e-29 131.7 103 73.8
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 3.0e-29 131.7 98 69.4
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 5.1e-29 131.0 96 69.8
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 6.7e-29 130.6 100 72.0
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 6.7e-29 130.6 100 75.0
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.1e-28 129.8 101 73.3
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 1.1e-28 129.8 100 73.0
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.0e-28 129.0 98 71.4
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 2.6e-28 128.6 99 69.7
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 2.6e-28 128.6 104 69.2
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 3.3e-28 128.3 98 68.4
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 4.4e-28 127.9 99 69.7
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 5.7e-28 127.5 100 71.0
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 7.4e-28 127.1 98 69.4
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 7.4e-28 127.1 100 72.0
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.3e-27 126.3 98 67.3
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 1.7e-27 125.9 100 67.0
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 1.7e-27 125.9 92 68.5
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 1.7e-27 125.9 98 68.4
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 2.2e-27 125.6 92 68.5
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 2.8e-27 125.2 103 68.9
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 2.8e-27 125.2 98 67.3
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.7e-27 124.8 98 65.3
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 3.7e-27 124.8 98 65.3
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 3.7e-27 124.8 98 67.3
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 4.8e-27 124.4 105 69.5
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.8e-27 124.4 74 82.4
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 4.8e-27 124.4 98 66.3
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 6.3e-27 124.0 108 63.9
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 6.3e-27 124.0 92 69.6
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 8.2e-27 123.6 92 68.5
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 1.8e-26 122.5 100 70.0
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 2.4e-26 122.1 100 70.0
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 2.4e-26 122.1 100 70.0
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.1e-26 121.3 74 81.1
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.1e-26 121.3 74 81.1
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.1e-26 121.3 74 81.1
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 5.3e-26 120.9 99 65.7
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.2e-25 119.8 98 64.3
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 1.5e-25 119.4 99 65.7
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 2.0e-25 119.0 99 65.7
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 3.5e-25 118.2 96 64.6
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 4.5e-25 117.9 124 57.3
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 4.5e-25 117.9 74 78.4
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 5.9e-25 117.5 102 64.7
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 5.9e-25 117.5 75 77.3
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 2.9e-24 115.2 97 61.9
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 2.9e-24 115.2 122 54.1
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 1.5e-23 112.8 97 61.9
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 3.2e-23 111.7 94 59.6
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 7.2e-23 110.5 74 70.3
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 3.6e-22 108.2 95 55.8
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 8.0e-22 107.1 76 73.7
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.0e-21 106.7 98 60.2
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 2.3e-21 105.5 83 67.5
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 2.3e-21 105.5 98 60.2
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.0e-21 104.8 63 82.5
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 4.4e-20 101.3 108 54.6
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 5.7e-20 100.9 99 54.5
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 4.8e-19 97.8 61 75.4
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 3.1e-18 95.1 77 62.3
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 2.7e-14 82.0 64 59.4
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 2.0e-12 75.9 96 43.8
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 9.8e-12 73.6 76 46.1
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 1.2e-09 66.6 69 52.2


User provided reference genes

Program Settings