Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 2.7e-91 338.6 163 100.0
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 1.1e-65 253.4 143 88.8
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 5.3e-47 191.4 146 66.4
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.0e-45 187.2 136 66.9
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.0e-45 187.2 124 70.2
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.1e-44 183.7 132 70.5
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.1e-44 183.7 119 72.3
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.1e-44 183.7 130 66.2
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.1e-44 183.7 129 67.4
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.5e-44 182.6 117 70.9
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 2.5e-44 182.6 134 67.2
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 2.5e-44 182.6 134 67.9
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 2.5e-44 182.6 119 71.4
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 4.2e-44 181.8 133 67.7
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 5.5e-44 181.4 136 66.9
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 5.5e-44 181.4 136 66.9
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 9.4e-44 180.6 152 60.5
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 9.4e-44 180.6 130 67.7
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 9.4e-44 180.6 142 65.5
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 1.6e-43 179.9 97 81.4
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 3.6e-43 178.7 129 64.3
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 4.7e-43 178.3 92 90.2
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 4.7e-43 178.3 152 58.6
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 6.1e-43 177.9 138 63.0
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 8.0e-43 177.6 144 59.7
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 8.0e-43 177.6 97 81.4
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 8.0e-43 177.6 97 81.4
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 8.0e-43 177.6 97 81.4
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.0e-42 177.2 133 68.4
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.4e-42 176.8 123 68.3
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 2.3e-42 176.0 152 58.6
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 3.0e-42 175.6 135 68.9
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 3.0e-42 175.6 122 72.1
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 5.2e-42 174.9 152 57.9
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 6.8e-42 174.5 108 74.1
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 8.8e-42 174.1 115 70.4
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.2e-41 173.7 122 68.0
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 1.2e-41 173.7 120 73.3
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.5e-41 173.3 135 65.9
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 2.0e-41 172.9 121 68.6
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 2.6e-41 172.6 135 64.4
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 3.4e-41 172.2 121 68.6
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.4e-41 172.2 114 68.4
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 3.4e-41 172.2 125 66.4
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 3.4e-41 172.2 143 62.2
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 7.5e-41 171.0 118 71.2
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 7.5e-41 171.0 118 66.1
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 9.7e-41 170.6 119 70.6
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 2.2e-40 169.5 107 70.1
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 2.2e-40 169.5 135 64.4
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 2.8e-40 169.1 125 65.6
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 3.7e-40 168.7 132 62.1
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 3.7e-40 168.7 136 61.0
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 4.8e-40 168.3 136 61.0
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 6.3e-40 167.9 135 62.2
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.4e-39 166.8 147 61.9
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.4e-39 166.8 114 65.8
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 2.4e-39 166.0 134 59.7
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 2.4e-39 166.0 126 66.7
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 3.1e-39 165.6 107 72.0
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.1e-39 165.6 151 55.6
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.1e-39 165.2 129 60.5
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 7.0e-39 164.5 108 71.3
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 9.1e-39 164.1 142 54.9
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.2e-38 163.7 97 74.2
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.2e-38 163.7 115 66.1
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 2.0e-38 162.9 81 88.9
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.0e-38 162.9 81 84.0
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 2.7e-38 162.5 141 56.0
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 7.7e-38 161.0 103 69.9
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 7.7e-38 161.0 96 74.0
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 7.7e-38 161.0 94 74.5
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.3e-37 160.2 136 61.8
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.7e-37 159.8 104 70.2
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.9e-37 159.1 97 76.3
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 3.8e-37 158.7 85 80.0
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 6.5e-37 157.9 147 56.5
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 8.5e-37 157.5 103 69.9
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.1e-36 157.1 140 56.4
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.1e-36 157.1 103 68.9
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.5e-36 156.8 138 57.2
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.9e-36 156.4 117 63.2
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 2.5e-36 156.0 84 79.8
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.5e-36 156.0 84 81.0
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.2e-36 155.2 142 54.9
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 5.5e-36 154.8 84 76.2
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 7.2e-36 154.5 94 70.2
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 7.2e-36 154.5 90 73.3
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 9.4e-36 154.1 126 58.7
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 9.4e-36 154.1 79 81.0
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.1e-35 152.9 105 70.5
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 4.7e-35 151.8 87 77.0
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 6.1e-35 151.4 103 68.0
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 8.0e-35 151.0 79 81.0
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 8.0e-35 151.0 119 58.8
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 8.0e-35 151.0 91 72.5
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 1.4e-34 150.2 87 73.6
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.8e-34 149.8 79 78.5
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 1.8e-34 149.8 90 71.1
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 5.2e-34 148.3 117 62.4
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 6.8e-34 147.9 95 70.5
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 6.8e-34 147.9 96 69.8
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 6.8e-34 147.9 111 61.3
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 8.8e-34 147.5 83 75.9
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 8.8e-34 147.5 83 75.9
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 8.8e-34 147.5 110 60.0
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 1.2e-33 147.1 103 68.0
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 9.8e-33 144.1 87 70.1
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 2.2e-32 142.9 76 76.3
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 2.2e-32 142.9 154 53.2
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.4e-31 139.4 74 75.7
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 2.4e-31 139.4 156 50.0
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 3.1e-31 139.0 147 54.4
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 4.5e-30 135.2 145 52.4
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 1.0e-29 134.0 68 86.8
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 2.9e-29 132.5 89 65.2
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 1.9e-28 129.8 97 64.9
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.2e-27 127.1 134 48.5
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 6.1e-27 124.8 126 49.2
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.2e-25 120.6 79 68.4
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 3.7e-24 115.5 53 90.6
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 4.9e-24 115.2 54 87.0
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.1e-23 114.0 79 68.4
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.8e-23 113.2 52 90.4
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 7.0e-23 111.3 91 61.5
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 4.5e-22 108.6 80 65.0
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 7.3e-20 101.3 82 52.4
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 5.2e-18 95.1 71 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 8.9e-18 94.4 115 41.7
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 8.9e-18 94.4 97 46.4
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 2.6e-17 92.8 77 54.5
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 4.4e-17 92.0 65 67.7
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 1.7e-16 90.1 68 61.8
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 4.9e-16 88.6 68 66.2
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 6.0e-14 81.6 97 42.3
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 6.6e-13 78.2 43 74.4
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 3.6e-11 72.4 44 68.2
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 8.0e-11 71.2 43 69.8
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 4.0e-10 68.9 124 35.5
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 3.4e-09 65.9 82 47.6
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 4.9e-08 62.0 59 49.2
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 4.9e-08 62.0 51 52.9


User provided reference genes

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