Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 0.0e+00 1174.1 573 100.0
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 0.0e+00 1174.1 573 100.0
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 0.0e+00 1174.1 573 100.0
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 0.0e+00 1174.1 573 100.0
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 0.0e+00 1142.5 571 97.7
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-309 1065.1 571 92.1
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 7.3e-309 1063.1 575 91.8
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 8.4e-305 1049.7 573 91.1
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.1e-303 1045.0 574 90.9
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 3.5e-303 1044.3 575 89.9
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 3.5e-303 1044.3 575 89.9
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.5e-301 1038.9 573 90.2
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.5e-301 1038.9 576 90.3
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.3e-301 1037.3 577 90.1
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 1.6e-300 1035.4 573 90.6
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 1.6e-300 1035.4 573 90.6
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 3.4e-298 1027.7 573 90.1
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 7.8e-295 1016.5 573 88.8
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-293 1011.9 572 87.9
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 5.6e-293 1010.4 552 90.8
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 3.1e-291 1004.6 573 88.5
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.2e-290 1002.7 575 88.5
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 5.8e-290 1000.3 565 88.8
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-287 992.6 567 88.2
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-287 992.6 567 88.2
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.5e-287 991.1 575 87.1
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.3e-286 989.2 565 87.1
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.8e-286 988.8 575 86.8
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 3.3e-285 984.6 552 89.1
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 4.5e-282 974.2 575 86.1
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.9e-281 971.5 541 89.3
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.9e-277 958.7 571 84.6
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 1.4e-272 942.6 549 86.0
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.7e-271 938.3 575 84.0
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.7e-271 938.3 575 84.0
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.7e-271 938.3 575 84.0
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.7e-271 938.3 575 84.0
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.7e-271 938.3 575 84.0
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.7e-271 938.3 575 84.0
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 4.6e-271 937.6 472 97.5
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.7e-257 892.5 503 89.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.2e-255 886.3 573 80.1
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 4.1e-251 871.3 572 80.1
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 2.4e-211 739.2 392 94.1
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.6e-207 726.5 483 78.3
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 4.0e-206 721.8 392 92.3
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.4e-188 661.4 472 75.8
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 3.0e-185 652.5 372 87.6
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 3.0e-185 652.5 372 87.6
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.1e-184 650.6 399 82.7
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 3.3e-184 649.0 374 87.2
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 5.6e-184 648.3 569 62.6
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.1e-183 646.4 371 87.3
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 4.7e-183 645.2 371 87.1
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 6.9e-182 641.3 360 89.4
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 7.8e-178 627.9 457 71.6
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 3.8e-172 609.0 318 94.3
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 5.6e-168 595.1 340 88.2
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 4.8e-167 592.0 361 84.2
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.0e-166 589.0 389 79.9
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.9e-165 584.3 573 59.3
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.4e-163 580.5 399 76.9
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.9e-160 570.1 372 80.6
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.7e-152 542.0 569 55.0
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 1.2e-149 534.3 569 54.5
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.0e-145 521.2 294 90.5
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 1.1e-142 511.1 270 92.2
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 2.2e-140 503.4 306 84.0
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 9.7e-136 488.0 242 97.5
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 4.5e-133 479.2 292 82.9
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.7e-132 477.2 260 92.3
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 2.4e-126 456.8 265 87.5
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.4e-126 456.8 265 87.5
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-125 454.5 285 81.8
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.0e-125 453.8 296 79.4
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 2.0e-125 453.8 372 66.9
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.7e-125 451.8 248 88.7
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 4.7e-122 442.6 391 62.7
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 8.8e-121 438.3 218 97.7
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-117 427.9 276 80.1
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.2e-114 417.9 239 90.4
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 2.0e-109 400.6 266 77.1
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.0e-109 400.6 204 94.1
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 3.3e-107 393.3 200 94.5
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 3.3e-107 393.3 200 94.5
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 1.2e-106 391.3 200 94.0
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-105 387.5 191 96.3
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-105 387.5 191 96.3
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.3e-103 381.3 193 94.8
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.1e-102 378.3 193 94.3
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.0e-101 374.0 859 36.1
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 8.6e-100 368.6 234 76.9
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 1.6e-98 364.4 273 69.6
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.1e-91 341.7 172 93.6
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 1.6e-90 337.8 198 88.9
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 2.1e-90 337.4 287 65.5
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.4e-89 334.7 176 90.3
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 8.9e-89 332.0 191 90.6
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 3.4e-88 330.1 181 92.8
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 2.4e-86 323.9 176 88.1
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 5.6e-83 312.8 175 88.6
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 2.1e-82 310.8 263 63.1
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.5e-80 304.7 262 63.0
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 1.9e-78 297.7 263 60.8
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 3.9e-76 290.0 144 93.8
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.1e-74 284.3 226 69.0
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 8.1e-74 282.3 189 79.4
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.1e-74 282.3 238 64.3
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 9.9e-72 275.4 347 47.6
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 2.9e-71 273.9 172 78.5
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 2.9e-71 273.9 172 78.5
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 4.9e-71 273.1 219 68.9
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 1.1e-70 271.9 162 84.0
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-70 271.6 135 98.5
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 7.8e-69 265.8 160 85.6
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 2.8e-66 257.3 132 95.5
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 2.4e-65 254.2 136 93.4
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.9e-63 247.3 149 84.6
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 6.0e-61 239.6 122 96.7
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 2.5e-59 234.2 120 96.7
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 7.3e-59 232.6 264 54.9
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 4.0e-57 226.9 142 75.4
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 5.3e-57 226.5 119 86.6
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 9.0e-57 225.7 147 76.2
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 2.6e-56 224.2 121 91.7
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 8.4e-55 219.2 112 91.1
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 5.4e-54 216.5 122 82.0
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 1.6e-53 214.9 122 87.7
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.7e-53 214.2 118 89.0
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.9e-53 212.6 123 87.8
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 6.2e-50 203.0 108 94.4
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 6.2e-50 203.0 116 90.5
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 1.1e-49 202.2 130 79.2
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 4.5e-48 196.8 117 87.2
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 4.9e-47 193.4 100 95.0
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 4.6e-45 186.8 103 86.4
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.9e-44 183.7 331 41.7
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.3e-39 168.7 165 61.2
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 4.9e-39 166.8 115 75.7
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.4e-38 165.2 91 87.9
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.1e-37 161.4 94 88.3
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 2.8e-34 151.0 75 96.0
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 7.7e-32 142.9 77 84.4
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 2.2e-31 141.4 137 57.7
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 2.3e-28 131.3 163 48.5
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-27 128.6 66 92.4
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.5e-27 127.9 93 73.1
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 2.2e-26 124.8 65 92.3
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.7e-24 116.3 62 91.9
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.7e-21 107.8 74 77.0
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-20 105.9 165 41.8
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 2.0e-19 101.7 97 56.7
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 2.6e-19 101.3 197 36.0
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.3e-19 100.9 64 70.3
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 7.4e-19 99.8 70 67.1
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 3.7e-18 97.4 71 67.6
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 4.8e-18 97.1 56 85.7
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 1.4e-17 95.5 51 74.5
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 3.5e-16 90.9 56 82.1
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 8.5e-15 86.3 47 87.2
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 1.1e-14 85.9 84 52.4
Aqoxy1G02245 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.9e-14 85.1 52 88.5
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 9.4e-14 82.8 48 83.3
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.1e-13 80.1 114 44.7
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 3.0e-12 77.8 50 74.0
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 3.0e-12 77.8 139 38.1
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 5.2e-12 77.0 67 59.7
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 2.6e-11 74.7 63 61.9
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 3.3e-11 74.3 45 77.8
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 4.4e-11 73.9 54 72.2
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.3e-10 72.4 49 73.5
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 4.8e-10 70.5 50 62.0
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 6.3e-10 70.1 53 66.0
DCAR_004797 Daucus carota HOM05D003783 ORTHO05D004568 1.4e-09 68.9 29 100.0
Solyc03g013380.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.4e-09 68.2 45 77.8
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 5.3e-09 67.0 95 48.4
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.6e-08 65.5 38 84.2
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 5.0e-07 60.5 35 85.7
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 1.5e-06 58.9 83 39.8
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 1.5e-06 58.9 45 68.9
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 4.2e-06 57.4 34 73.5
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 9.4e-06 56.2 28 92.9


User provided reference genes

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