Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 4.6e-144 515.0 352 100.0
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 1.4e-65 254.2 372 62.6
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 5.1e-63 245.7 366 68.9
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 8.0e-32 142.1 297 41.4
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 6.8e-31 139.0 301 38.5
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 1.2e-30 138.3 300 42.7
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 1.5e-30 137.9 285 43.5
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.5e-30 137.9 286 45.1
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 2.6e-30 137.1 290 43.1
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 5.7e-30 136.0 309 39.2
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.3e-29 134.8 291 39.2
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 3.7e-29 133.3 286 41.6
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 6.4e-29 132.5 275 39.3
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 1.4e-28 131.3 294 41.2
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 1.4e-28 131.3 283 38.5
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 4.1e-28 129.8 286 38.8
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 4.1e-28 129.8 298 39.9
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 4.1e-28 129.8 289 40.8
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 3.5e-27 126.7 295 42.0
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 4.6e-27 126.3 281 36.7
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 7.8e-27 125.6 277 41.2
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 7.8e-27 125.6 277 41.2
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 7.8e-27 125.6 280 42.1
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 7.8e-27 125.6 283 36.7
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 1.0e-26 125.2 304 40.1
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 1.3e-26 124.8 274 39.4
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.7e-26 124.4 276 42.4
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 1.7e-26 124.4 283 36.7
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 2.3e-26 124.0 301 42.9
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 2.3e-26 124.0 309 41.1
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 2.3e-26 124.0 283 38.2
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 2.3e-26 124.0 276 39.5
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 3.9e-26 123.2 299 39.8
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 6.6e-26 122.5 289 36.7
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 6.6e-26 122.5 276 40.6
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 1.1e-25 121.7 294 37.8
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 1.5e-25 121.3 286 37.4
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 1.9e-25 120.9 298 38.3
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 4.3e-25 119.8 285 37.2
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 5.6e-25 119.4 277 36.8
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 1.2e-24 118.2 288 39.2
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 1.6e-24 117.9 289 37.7
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 1.6e-24 117.9 305 41.3
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 1.6e-24 117.9 283 40.3
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 2.8e-24 117.1 287 37.3
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 2.8e-24 117.1 295 42.4
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 4.7e-24 116.3 274 38.0
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 6.2e-24 115.9 284 35.2
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 6.2e-24 115.9 295 39.7
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 6.2e-24 115.9 280 35.7
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 2.0e-22 110.9 266 39.1
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 5.8e-22 109.4 287 40.1
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 1.3e-21 108.2 297 37.7
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.7e-21 107.8 258 35.7
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 2.9e-21 107.1 278 37.4
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 3.7e-21 106.7 275 34.5
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 4.9e-21 106.3 218 37.6
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 1.4e-20 104.8 280 34.6
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 1.9e-20 104.4 308 31.5
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 5.4e-20 102.8 296 39.9
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 5.4e-20 102.8 295 36.6
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 1.6e-19 101.3 283 37.5
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.6e-19 101.3 291 38.1
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 3.0e-18 97.1 277 34.7
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 3.0e-18 97.1 279 32.3
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 6.6e-18 95.9 290 37.6
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 8.6e-18 95.5 308 35.4
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 1.1e-17 95.1 276 33.0
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 7.3e-17 92.4 304 35.5
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.2e-16 91.7 274 32.8
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 2.8e-16 90.5 285 33.7
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.4e-15 88.2 294 30.3
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 1.4e-15 88.2 171 37.4
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 6.8e-15 85.9 297 35.7
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 2.6e-14 84.0 283 37.5
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 3.7e-13 80.1 306 32.0
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 4.9e-13 79.7 289 35.3
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 4.9e-13 79.7 288 31.9
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.9e-12 77.8 286 32.5
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 1.9e-12 77.8 279 33.3
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 7.1e-12 75.9 280 31.1
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 7.1e-12 75.9 302 29.8
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 1.2e-11 75.1 280 30.7
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 2.1e-11 74.3 270 31.1
ClCG06G001430 Citrullus lanatus HOM05D007706 ORTHO05D009593 3.5e-11 73.6 294 32.0
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 3.5e-11 73.6 283 31.1
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 6.0e-11 72.8 279 30.1
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 3.9e-10 70.1 280 29.3
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 3.9e-10 70.1 295 30.8
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 6.6e-10 69.3 272 30.1
TAR622G1049 Trochodendron aralioides HOM05D027966 ORTHO05D025782 6.6e-10 69.3 264 28.8
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 1.1e-09 68.6 287 30.0
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 1.1e-09 68.6 296 29.1
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 3.3e-09 67.0 151 38.4
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 4.3e-09 66.6 284 31.0
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 4.3e-09 66.6 85 47.1
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 5.6e-09 66.2 268 31.7
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 7.3e-09 65.9 83 45.8
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.6e-08 64.7 107 41.1
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 2.1e-08 64.3 319 29.2
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 4.7e-08 63.2 337 27.9
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 4.7e-08 63.2 286 28.0
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 6.2e-08 62.8 278 30.2
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.1e-07 62.0 288 29.9
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 4.0e-07 60.1 34 76.5
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 5.2e-07 59.7 85 42.4
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 5.2e-07 59.7 37 70.3
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 6.8e-07 59.3 38 63.2
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 6.8e-07 59.3 89 42.7
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 8.9e-07 58.9 83 43.4
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.2e-06 58.5 218 28.4
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 2.6e-06 57.4 55 49.1
MSTRG.21461 Avicennia marina HOM05D007706 ORTHO05D009593 3.4e-06 57.0 84 44.0
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 3.4e-06 57.0 40 62.5
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 4.4e-06 56.6 109 36.7
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 4.4e-06 56.6 78 50.0
SalBow7G0697 Salvia bowleyana HOM05D007706 ORTHO05D009593 7.6e-06 55.8 259 34.7
Sed0022884 Sechium edule HOM05D007706 ORTHO05D009593 9.9e-06 55.5 190 37.4


User provided reference genes

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