Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 4.5e-105 384.8 225 100.0
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.0e-76 289.7 219 70.8
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 7.3e-71 271.2 230 67.0
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.1e-69 267.3 224 66.1
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 3.8e-67 258.8 229 65.1
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 3.3e-55 219.2 231 57.1
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.7e-51 206.8 236 56.4
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 3.2e-50 202.6 224 54.5
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 5.5e-50 201.8 230 52.2
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 1.2e-49 200.7 222 54.1
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.2e-49 200.7 226 52.7
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.6e-49 200.3 235 57.4
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.6e-49 200.3 242 51.7
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 2.7e-49 199.5 226 54.9
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 3.5e-49 199.1 226 51.8
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 6.0e-49 198.4 229 53.3
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 7.9e-49 198.0 229 51.5
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 1.0e-48 197.6 228 51.3
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.3e-48 197.2 223 53.4
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.3e-48 197.2 223 53.4
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 1.8e-48 196.8 232 53.9
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 3.9e-48 195.7 230 55.2
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 3.9e-48 195.7 228 50.0
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.1e-47 194.1 235 55.7
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.1e-47 194.1 229 50.2
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 1.1e-47 194.1 229 50.2
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.1e-47 194.1 190 57.9
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 1.9e-47 193.4 229 50.2
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 2.5e-47 193.0 226 58.0
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 2.5e-47 193.0 224 51.3
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 3.3e-47 192.6 232 50.4
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 3.3e-47 192.6 226 50.0
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 5.6e-47 191.8 238 52.9
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 7.4e-47 191.4 230 50.9
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.3e-46 190.7 229 53.3
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 1.6e-46 190.3 222 52.3
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.6e-46 190.3 187 58.3
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.6e-46 190.3 188 56.4
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.6e-46 190.3 226 50.9
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 2.1e-46 189.9 190 56.8
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 3.7e-46 189.1 207 55.1
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 8.1e-46 188.0 224 50.9
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.8e-45 186.8 226 48.2
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 1.8e-45 186.8 123 74.8
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 4.0e-45 185.7 223 52.5
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 4.0e-45 185.7 205 53.2
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.3e-45 185.3 191 55.5
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 1.2e-44 184.1 231 48.5
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 1.2e-44 184.1 230 52.2
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 1.2e-44 184.1 225 49.8
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-44 183.7 191 55.5
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 2.0e-44 183.3 228 48.7
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 2.6e-44 183.0 192 55.2
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 2.6e-44 183.0 193 55.4
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.6e-44 183.0 193 54.9
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 3.4e-44 182.6 185 59.5
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 4.5e-44 182.2 215 52.1
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.8e-44 181.8 225 50.2
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.6e-44 181.4 228 56.1
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.0e-43 181.0 227 49.3
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 1.0e-43 181.0 202 53.5
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.0e-43 181.0 104 85.6
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.3e-43 180.6 231 47.6
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.3e-43 180.6 220 51.4
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 2.2e-43 179.9 143 66.4
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.2e-43 179.9 197 57.9
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 3.8e-43 179.1 244 48.0
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 3.8e-43 179.1 145 64.1
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 4.9e-43 178.7 224 48.7
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.5e-43 178.3 224 49.6
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 1.4e-42 177.2 225 50.2
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.9e-42 176.8 193 52.8
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.5e-42 176.4 196 53.1
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.5e-42 176.4 196 51.5
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.5e-42 176.4 196 51.5
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 3.2e-42 176.0 234 48.7
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.2e-42 176.0 227 48.0
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.2e-42 176.0 193 52.8
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.2e-42 175.6 196 51.5
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 7.1e-42 174.9 194 53.6
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 9.3e-42 174.5 232 50.0
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 9.3e-42 174.5 219 49.8
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 1.2e-41 174.1 136 65.4
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.2e-41 174.1 140 65.7
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 2.1e-41 173.3 228 47.8
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 2.1e-41 173.3 195 53.3
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 2.1e-41 173.3 181 53.6
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.7e-41 172.9 138 67.4
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 1.0e-40 171.0 222 46.4
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 1.0e-40 171.0 144 65.3
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.0e-40 171.0 229 46.3
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 1.3e-40 170.6 239 46.9
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.3e-40 170.6 223 47.1
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.3e-40 170.6 185 51.9
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 3.0e-40 169.5 214 48.6
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 5.1e-40 168.7 191 51.8
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.5e-39 167.2 211 49.8
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.5e-39 167.2 123 69.9
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 1.9e-39 166.8 103 78.6
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.5e-39 166.4 105 76.2
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.5e-39 166.4 214 48.1
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 2.5e-39 166.4 195 53.3
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.3e-39 166.0 190 53.7
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 4.3e-39 165.6 223 46.6
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.7e-39 165.2 138 63.8
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 7.4e-39 164.9 208 48.1
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 9.6e-39 164.5 103 74.8
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 2.8e-38 162.9 195 51.8
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 3.7e-38 162.5 114 71.1
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 3.7e-38 162.5 194 60.3
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 3.7e-38 162.5 223 45.3
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 4.8e-38 162.2 194 51.5
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 4.8e-38 162.2 227 47.6
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 8.2e-38 161.4 199 50.8
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.1e-37 161.0 139 64.0
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 1.1e-37 161.0 228 46.9
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.8e-37 160.2 235 45.5
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.8e-37 160.2 104 76.0
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 1.8e-37 160.2 129 63.6
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 1.8e-37 160.2 197 49.7
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 2.4e-37 159.8 103 73.8
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 2.4e-37 159.8 103 73.8
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.4e-37 159.8 101 77.2
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 3.1e-37 159.5 198 49.5
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 3.1e-37 159.5 108 74.1
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 4.1e-37 159.1 200 50.0
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 5.3e-37 158.7 103 72.8
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 5.3e-37 158.7 103 72.8
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 5.3e-37 158.7 191 49.7
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 1.2e-36 157.5 204 48.5
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.2e-36 157.5 197 50.8
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.5e-36 157.1 190 50.0
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.0e-36 156.8 97 80.4
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.0e-36 156.8 110 65.5
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.6e-36 156.4 194 48.5
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.6e-36 156.4 103 72.8
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 3.4e-36 156.0 94 78.7
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 3.4e-36 156.0 128 63.3
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 7.6e-36 154.8 97 75.3
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.0e-35 154.5 234 50.4
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 1.7e-35 153.7 200 47.5
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 1.7e-35 153.7 195 56.9
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 2.2e-35 153.3 103 71.8
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 3.8e-35 152.5 103 72.8
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 3.8e-35 152.5 132 62.1
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 1.4e-34 150.6 103 69.9
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.0e-32 144.4 99 68.7
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.3e-32 143.3 135 58.5
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.3e-31 139.4 81 81.5
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 9.7e-31 137.9 105 62.9
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 1.8e-29 133.7 85 75.3
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 1.8e-29 133.7 85 75.3
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 1.8e-29 133.7 102 63.7
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 5.3e-29 132.1 192 45.3
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 5.9e-28 128.6 186 44.6
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 5.5e-26 122.1 116 55.2
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.4e-21 107.5 100 59.0
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 1.8e-21 107.1 127 52.8
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 1.5e-20 104.0 164 42.7
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 4.5e-20 102.4 156 46.2
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 1.2e-17 94.4 88 48.9
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.8e-13 80.5 88 50.0
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 1.6e-12 77.4 43 81.4
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.5e-12 76.3 80 50.0
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.5e-10 70.9 86 41.9
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 8.0e-09 65.1 40 72.5
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.4e-08 64.3 47 70.2


User provided reference genes

Program Settings