Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 1.2e-79 300.1 183 100.0
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 9.8e-74 280.4 182 94.0
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 8.6e-70 267.3 182 89.6
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 3.3e-69 265.4 182 89.0
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 6.6e-62 241.1 182 69.2
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 1.4e-59 233.4 183 82.0
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 4.9e-57 224.9 182 58.2
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 4.9e-57 224.9 184 59.2
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 1.9e-56 223.0 182 58.8
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 3.2e-56 222.2 182 58.2
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 4.1e-56 221.9 182 55.5
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 4.1e-56 221.9 182 54.9
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 4.1e-56 221.9 182 67.0
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 7.1e-56 221.1 182 57.7
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 7.1e-56 221.1 182 59.3
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 9.2e-56 220.7 182 56.6
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 3.5e-55 218.8 182 56.0
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 7.8e-55 217.6 182 56.0
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 7.8e-55 217.6 182 55.5
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 1.0e-54 217.2 182 55.5
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 1.0e-54 217.2 182 66.5
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 2.3e-54 216.1 182 67.0
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 2.3e-54 216.1 182 67.0
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 5.1e-54 214.9 182 64.8
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 1.1e-53 213.8 182 65.9
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 1.5e-53 213.4 182 57.7
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 1.9e-53 213.0 182 67.0
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 1.9e-53 213.0 182 54.9
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 1.9e-53 213.0 182 61.5
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 2.5e-53 212.6 182 66.5
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 2.5e-53 212.6 182 56.0
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 4.3e-53 211.8 182 66.5
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 4.3e-53 211.8 182 54.9
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 5.6e-53 211.5 182 65.9
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 7.3e-53 211.1 182 66.5
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 7.3e-53 211.1 182 68.7
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 9.5e-53 210.7 182 55.5
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 1.2e-52 210.3 182 60.4
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 1.2e-52 210.3 182 67.6
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 1.2e-52 210.3 182 54.9
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 1.2e-52 210.3 182 55.5
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 1.2e-52 210.3 182 65.9
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 1.6e-52 209.9 182 65.4
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 2.1e-52 209.5 182 66.5
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 4.7e-52 208.4 182 63.7
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 6.2e-52 208.0 178 66.3
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 6.2e-52 208.0 182 53.3
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 6.2e-52 208.0 182 54.4
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 6.2e-52 208.0 182 54.4
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 1.1e-51 207.2 182 54.9
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 1.8e-51 206.5 182 67.6
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 2.4e-51 206.1 177 55.4
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 2.4e-51 206.1 182 53.8
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 2.4e-51 206.1 182 53.8
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 4.0e-51 205.3 182 64.8
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 4.0e-51 205.3 182 70.9
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 5.2e-51 204.9 182 68.1
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 5.2e-51 204.9 182 53.3
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 6.8e-51 204.5 182 53.8
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 8.9e-51 204.1 182 52.7
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 8.9e-51 204.1 182 65.4
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 8.9e-51 204.1 177 54.8
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 8.9e-51 204.1 182 65.4
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 8.9e-51 204.1 182 53.8
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 1.2e-50 203.8 182 51.6
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 2.6e-50 202.6 182 53.3
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 2.6e-50 202.6 182 53.3
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 2.6e-50 202.6 182 53.3
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 2.6e-50 202.6 182 52.7
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 4.4e-50 201.8 182 51.1
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 5.8e-50 201.4 182 54.4
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 5.8e-50 201.4 182 62.1
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 9.9e-50 200.7 183 50.8
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 9.9e-50 200.7 182 61.5
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 9.9e-50 200.7 182 64.8
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 9.9e-50 200.7 182 54.4
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.3e-49 200.3 182 53.8
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 3.8e-49 198.7 182 50.5
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 6.4e-49 198.0 182 52.2
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 1.4e-48 196.8 182 53.3
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 1.9e-48 196.4 182 70.9
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 1.9e-48 196.4 182 51.1
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 2.4e-48 196.1 183 59.6
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 2.4e-48 196.1 182 71.4
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 3.2e-48 195.7 182 52.7
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 3.2e-48 195.7 182 63.2
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 1.2e-47 193.7 183 49.7
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 1.6e-47 193.4 183 51.4
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 2.7e-47 192.6 182 70.3
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.5e-47 192.2 169 65.7
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 3.5e-47 192.2 169 65.7
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 3.5e-47 192.2 183 49.7
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 3.5e-47 192.2 182 69.2
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 4.6e-47 191.8 183 49.2
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 7.8e-47 191.0 183 64.5
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 7.8e-47 191.0 183 64.5
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 7.8e-47 191.0 183 64.5
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 1.3e-46 190.3 183 48.6
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 2.3e-46 189.5 183 68.3
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 3.0e-46 189.1 169 53.3
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 3.9e-46 188.7 183 50.8
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 1.5e-45 186.8 183 61.2
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 2.5e-45 186.0 183 65.6
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 3.3e-45 185.7 182 51.6
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 1.8e-43 179.9 182 47.3
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 2.4e-43 179.5 172 51.2
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 3.1e-43 179.1 182 48.4
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 1.5e-42 176.8 182 44.5
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 2.0e-42 176.4 182 45.6
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 3.2e-40 169.1 182 48.9
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 7.8e-39 164.5 182 46.2
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 1.0e-38 164.1 185 53.0
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 1.5e-37 160.2 145 51.7
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 6.2e-36 154.8 184 45.1
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 8.4e-33 144.4 166 44.6
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.3e-30 137.1 182 42.3
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 3.3e-29 132.5 184 34.8
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 6.9e-27 124.8 184 32.6
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 1.5e-26 123.6 275 34.2
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 4.5e-26 122.1 189 37.0
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 1.7e-25 120.2 186 36.0
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 3.9e-22 109.0 159 43.4
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 1.1e-19 100.9 182 31.9
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 1.6e-15 87.0 60 65.0
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 6.0e-15 85.1 61 63.9
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 6.0e-15 85.1 61 63.9
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.5e-13 80.5 59 61.0
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 1.8e-11 73.6 85 47.1
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 2.7e-07 59.7 44 54.5


User provided reference genes

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