Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.1e-265 919.5 463 100.0
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 1.4e-177 626.7 485 69.5
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 5.6e-174 614.8 484 67.8
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 4.0e-164 582.0 476 67.9
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 9.9e-131 471.1 476 56.1
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 3.2e-129 466.1 463 54.0
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 4.3e-126 455.7 461 53.1
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 7.4e-126 454.9 436 56.7
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 5.5e-121 438.7 474 53.0
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 4.6e-120 435.6 470 52.3
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 1.3e-119 434.1 456 54.8
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 1.8e-119 433.7 472 53.4
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 7.4e-118 428.3 470 51.9
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.6e-117 427.2 468 53.0
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 2.1e-117 426.8 435 54.3
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 2.1e-117 426.8 480 52.1
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 3.7e-117 426.0 475 51.8
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 8.1e-117 424.9 478 52.1
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 3.1e-116 422.9 474 52.7
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.2e-115 421.0 480 52.7
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.6e-115 419.9 476 53.2
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 3.4e-115 419.5 489 50.7
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 2.9e-114 416.4 462 51.3
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.1e-113 414.5 479 52.8
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.1e-113 414.5 480 53.1
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 1.4e-113 414.1 433 52.9
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 3.2e-113 412.9 480 52.9
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 3.2e-113 412.9 478 52.5
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.2e-112 411.0 474 50.8
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 1.6e-112 410.6 483 50.3
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 6.0e-112 408.7 439 54.4
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 7.9e-112 408.3 477 52.6
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 2.3e-111 406.8 444 51.6
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 3.9e-111 406.0 440 52.5
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 1.1e-110 404.4 474 51.3
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.5e-110 404.1 442 53.6
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 1.3e-109 401.0 474 51.7
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 1.8e-108 397.1 435 51.5
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 4.1e-108 396.0 442 54.1
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 6.9e-108 395.2 476 50.6
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.0e-107 393.7 468 50.6
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 2.6e-107 393.3 444 52.9
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.0e-106 391.3 440 50.5
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 2.2e-106 390.2 469 50.7
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 1.1e-102 377.9 435 52.6
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 4.3e-102 375.9 438 52.5
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 1.3e-101 374.4 444 50.9
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 2.8e-101 373.2 482 46.7
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.8e-101 373.2 424 53.1
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 3.7e-101 372.9 481 46.8
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 4.8e-101 372.5 488 47.5
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 6.3e-101 372.1 482 46.5
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 8.2e-101 371.7 385 54.3
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.1e-100 371.3 489 47.9
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.1e-100 371.3 424 52.8
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.1e-100 371.3 475 48.0
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 1.8e-100 370.5 468 46.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.4e-100 370.2 481 47.4
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.4e-100 370.2 422 52.1
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 3.1e-100 369.8 438 50.7
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 3.1e-100 369.8 473 47.1
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 9.0e-100 368.2 462 45.9
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 2.0e-99 367.1 483 46.8
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 2.0e-99 367.1 479 48.0
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 7.7e-99 365.2 464 46.8
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 1.0e-98 364.8 439 50.3
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 1.9e-97 360.5 412 52.4
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 1.8e-95 354.0 501 44.7
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 5.1e-95 352.4 512 44.1
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 6.7e-95 352.1 465 46.2
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.5e-94 350.9 470 46.6
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 2.6e-94 350.1 445 48.5
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 3.3e-94 349.7 486 43.2
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 5.7e-94 349.0 447 47.7
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 2.2e-93 347.1 498 45.6
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 4.8e-93 345.9 459 45.3
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 1.8e-92 344.0 465 45.8
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 4.1e-92 342.8 458 46.9
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 1.5e-91 340.9 435 47.8
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 1.5e-91 340.9 401 48.6
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 1.7e-90 337.4 414 46.6
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 8.5e-90 335.1 471 44.6
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 1.1e-89 334.7 471 44.8
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 1.9e-89 334.0 448 46.7
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.9e-89 334.0 490 44.1
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 2.5e-89 333.6 471 45.2
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.5e-89 333.6 471 44.8
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 2.5e-89 333.6 405 49.6
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 2.7e-88 330.1 478 42.9
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 6.7e-87 325.5 453 45.3
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 2.6e-86 323.6 474 43.7
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.4e-86 322.8 496 42.1
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 5.7e-86 322.4 451 46.3
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.1e-84 318.2 441 43.1
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.0e-82 311.6 491 41.1
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 1.1e-81 308.1 327 53.8
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 2.5e-81 307.0 491 41.8
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.2e-80 304.7 460 42.6
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.6e-80 304.3 357 50.4
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 1.8e-79 300.8 461 41.6
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 2.3e-79 300.4 389 45.0
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 5.2e-79 299.3 446 41.0
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 1.5e-78 297.7 408 44.1
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 3.3e-78 296.6 491 39.7
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 4.4e-78 296.2 393 47.8
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 7.0e-76 288.9 463 40.4
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 3.5e-75 286.6 449 41.9
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 3.2e-73 280.0 444 41.7
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 4.2e-73 279.6 452 42.0
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 4.7e-72 276.2 454 42.5
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 6.1e-72 275.8 447 42.3
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 8.0e-72 275.4 449 41.0
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 8.0e-72 275.4 364 41.8
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.8e-69 266.9 462 39.4
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 2.0e-67 260.8 390 44.1
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 4.5e-67 259.6 300 50.3
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 1.3e-66 258.1 456 39.0
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 1.7e-66 257.7 454 37.9
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 2.9e-66 256.9 453 39.7
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 2.8e-64 250.4 381 43.3
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 1.0e-63 248.4 201 61.2
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 1.8e-63 247.7 381 43.0
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 2.2e-61 240.7 199 61.3
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 4.9e-61 239.6 198 61.1
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.5e-59 233.4 396 38.4
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 4.5e-59 233.0 448 35.0
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 2.3e-58 230.7 244 51.6
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 4.3e-57 226.5 394 37.8
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 5.2e-55 219.5 422 35.3
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.6e-54 217.2 442 35.5
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 9.2e-52 208.8 490 31.4
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.5e-51 206.8 497 33.0
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 3.9e-50 203.4 429 33.8
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 5.2e-47 193.0 416 33.7
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 1.2e-46 191.8 433 34.2
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 2.9e-45 187.2 158 58.9
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 5.4e-44 183.0 462 32.3
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 7.0e-44 182.6 366 35.5
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 7.5e-38 162.5 145 55.9
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 7.5e-38 162.5 145 55.9
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 1.4e-36 158.3 357 33.9
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 2.8e-32 144.1 166 45.8
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.6e-32 143.7 167 46.1
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.1e-31 142.1 301 35.2
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 1.1e-31 142.1 301 35.2
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 3.1e-31 140.6 282 39.4
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 3.1e-31 140.6 166 44.0
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 5.8e-30 136.3 109 57.8
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 7.6e-30 136.0 385 29.9
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 1.6e-27 128.3 291 37.1
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 2.3e-26 124.4 161 39.8
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 8.4e-21 105.9 141 42.6
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 2.5e-17 94.4 104 50.0
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.2e-14 85.5 262 29.4
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 6.7e-10 69.7 124 40.3
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.5e-09 67.8 120 32.5


User provided reference genes

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