Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 6.4e-58 227.3 119 100.0
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 5.1e-55 217.6 119 95.0
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 6.6e-55 217.2 119 95.0
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 2.5e-54 215.3 119 94.1
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 7.1e-49 197.2 116 86.2
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 6.0e-48 194.1 118 82.2
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 6.0e-48 194.1 118 85.6
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 6.0e-48 194.1 116 84.5
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 1.3e-47 193.0 118 83.9
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.3e-47 192.2 118 81.4
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.3e-47 192.2 116 82.8
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 3.0e-47 191.8 118 81.4
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 3.9e-47 191.4 116 82.8
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 3.9e-47 191.4 116 82.8
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 5.1e-47 191.0 116 83.6
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 5.1e-47 191.0 118 82.2
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 5.1e-47 191.0 117 82.1
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 6.6e-47 190.7 116 82.8
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 6.6e-47 190.7 116 82.8
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 8.7e-47 190.3 116 81.9
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.5e-46 189.5 117 79.5
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.5e-46 189.5 116 81.9
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.9e-46 189.1 116 82.8
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.9e-46 189.1 118 82.2
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 3.3e-46 188.3 117 80.3
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 3.3e-46 188.3 116 81.9
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 3.3e-46 188.3 116 81.9
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 3.3e-46 188.3 116 81.0
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.3e-46 188.0 116 80.2
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 4.3e-46 188.0 118 79.7
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.3e-46 188.0 118 80.5
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 5.6e-46 187.6 118 80.5
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 5.6e-46 187.6 118 79.7
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 5.6e-46 187.6 118 79.7
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 5.6e-46 187.6 118 78.0
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 7.3e-46 187.2 118 80.5
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 7.3e-46 187.2 118 81.4
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 9.6e-46 186.8 118 78.8
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 9.6e-46 186.8 118 79.7
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.3e-45 186.4 118 80.5
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 1.3e-45 186.4 117 80.3
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 1.3e-45 186.4 117 80.3
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 1.6e-45 186.0 118 78.0
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.6e-45 186.0 118 83.1
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 1.6e-45 186.0 118 78.8
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.6e-45 186.0 118 78.8
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.6e-45 186.0 116 81.9
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 2.1e-45 185.7 118 82.2
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.1e-45 185.7 118 80.5
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 3.6e-45 184.9 119 79.8
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.6e-45 184.9 117 79.5
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 3.6e-45 184.9 118 80.5
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 4.8e-45 184.5 118 78.0
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.8e-45 184.5 116 82.8
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 4.8e-45 184.5 116 82.8
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 4.8e-45 184.5 116 79.3
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 4.8e-45 184.5 118 81.4
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 6.2e-45 184.1 118 81.4
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 8.1e-45 183.7 118 80.5
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 8.1e-45 183.7 116 79.3
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 8.1e-45 183.7 116 81.9
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 8.1e-45 183.7 117 77.8
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 8.1e-45 183.7 116 79.3
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 8.1e-45 183.7 118 79.7
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.1e-44 183.3 117 78.6
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.1e-44 183.3 117 78.6
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 1.1e-44 183.3 116 82.8
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.1e-44 183.3 117 77.8
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.1e-44 183.3 117 77.8
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.4e-44 183.0 116 78.4
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.4e-44 183.0 118 78.8
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.4e-44 183.0 118 81.4
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 1.4e-44 183.0 118 81.4
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 1.8e-44 182.6 116 78.4
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 2.4e-44 182.2 116 82.8
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 2.4e-44 182.2 117 79.5
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 2.4e-44 182.2 116 78.4
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.1e-44 181.8 118 78.8
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 3.1e-44 181.8 118 78.8
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 3.1e-44 181.8 116 78.4
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 4.0e-44 181.4 116 78.4
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 4.0e-44 181.4 116 78.4
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 4.0e-44 181.4 116 77.6
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 6.9e-44 180.6 118 76.3
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 9.0e-44 180.3 117 76.1
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 9.0e-44 180.3 117 78.6
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 9.0e-44 180.3 116 77.6
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-43 179.9 116 76.7
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 1.2e-43 179.9 116 76.7
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 1.2e-43 179.9 117 77.8
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.5e-43 179.5 116 77.6
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 2.0e-43 179.1 116 76.7
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 2.0e-43 179.1 118 77.1
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 2.6e-43 178.7 118 79.7
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 2.6e-43 178.7 116 76.7
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 3.4e-43 178.3 117 76.1
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 3.4e-43 178.3 116 79.3
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 4.5e-43 177.9 116 75.9
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 4.5e-43 177.9 117 76.1
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 7.6e-43 177.2 116 75.0
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.3e-42 176.4 118 77.1
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 3.2e-41 171.8 117 75.2
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 3.5e-40 168.3 117 74.4
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 4.6e-40 167.9 118 68.6
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 7.9e-40 167.2 117 73.5
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.8e-39 166.0 116 70.7
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 3.0e-39 165.2 118 68.6
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 1.5e-38 162.9 118 70.3
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 5.6e-38 161.0 118 68.6
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 5.6e-38 161.0 118 66.9
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.3e-37 159.8 118 66.1
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.6e-37 159.5 118 66.1
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 4.8e-37 157.9 116 65.5
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 4.8e-37 157.9 118 65.3
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 8.1e-37 157.1 118 66.1
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 1.8e-36 156.0 119 65.5
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 1.8e-36 156.0 119 66.4
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 1.8e-36 156.0 119 65.5
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 1.8e-36 156.0 119 65.5
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 3.1e-36 155.2 118 66.1
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 4.0e-36 154.8 119 63.9
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 5.3e-36 154.5 119 66.4
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 1.5e-35 152.9 115 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 2.0e-35 152.5 122 61.5
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 2.6e-35 152.1 117 65.0
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 2.2e-34 149.1 118 66.1
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.1e-33 146.7 116 63.8
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 1.4e-33 146.4 118 65.3
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 9.3e-33 143.7 117 63.2
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 9.3e-33 143.7 117 63.2
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.2e-32 143.3 92 79.3
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 2.7e-32 142.1 124 57.3
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 6.0e-32 141.0 118 65.3
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 7.4e-30 134.0 118 59.3
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 3.7e-29 131.7 118 57.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 2.2e-26 122.5 112 56.2
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 3.8e-26 121.7 89 62.9
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.9e-25 119.4 116 55.2
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.0e-23 113.6 106 60.4
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 3.9e-23 111.7 113 54.0
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 2.5e-17 92.4 117 41.0
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 3.2e-17 92.0 112 39.3
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 9.4e-17 90.5 62 71.0
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 3.7e-13 78.6 77 55.8
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 1.4e-12 76.6 87 43.7


User provided reference genes

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