Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0103531 Helianthus annuus HOM05D004259 ORTHO05D005014 3.9e-207 724.5 364 100.0
Lsat_1_v5_gn_1_20280 Lactuca sativa HOM05D004259 ORTHO05D005014 9.1e-180 633.6 364 86.3
CSS0003524 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 1.6e-160 569.7 364 76.1
Atru.chr8.1940 Acer truncatum HOM05D004259 ORTHO05D005014 2.1e-160 569.3 364 75.5
ECA247G2793 Erigeron canadensis HOM05D004259 ORTHO05D005014 9.8e-158 560.5 322 87.0
Potri.003G094800 Populus trichocarpa HOM05D004259 ORTHO05D005014 2.8e-157 558.9 364 74.7
Duzib128G0657 Durio zibethinus HOM05D004259 ORTHO05D005014 1.1e-156 557.0 361 74.0
Ciclev10012027m.g Citrus clementina HOM05D004259 ORTHO05D005014 9.1e-156 553.9 364 73.6
Sed0023883 Sechium edule HOM05D004259 ORTHO05D005014 1.3e-154 550.1 361 74.5
Lj3C736T6 Lonicera japonica HOM05D004259 ORTHO05D005014 1.7e-154 549.7 364 73.6
Migut.N02703 Erythranthe guttata HOM05D004259 ORTHO05D005014 5.0e-154 548.1 364 72.3
Manes.08G078200 Manihot esculenta HOM05D004259 ORTHO05D005014 8.6e-154 547.4 364 72.8
Cfa018528 Carpinus fangiana HOM05D004259 ORTHO05D005014 1.9e-153 546.2 358 74.3
MSTRG.24327 Avicennia marina HOM05D004259 ORTHO05D005014 2.8e-152 542.3 364 72.0
Gohir.D11G345100 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.8e-152 542.3 362 71.8
Gohir.A11G326200 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.6e-152 542.0 362 71.5
Gorai.007G375500 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.6e-152 542.0 362 71.8
TAR376G0692 Trochodendron aralioides HOM05D004259 ORTHO05D005014 1.4e-151 540.0 359 73.3
CsaV3_2G028020 Cucumis sativus L. HOM05D004259 ORTHO05D005014 1.8e-151 539.7 362 72.7
MELO3C010882.2 Cucumis melo HOM05D004259 ORTHO05D005014 2.3e-151 539.3 362 72.1
Peaxi162Scf00162g00029 Petunia axillaris HOM05D004259 ORTHO05D005014 5.2e-151 538.1 372 71.2
CANSAT01G2810 Cannabis sativa HOM05D004259 ORTHO05D005014 1.5e-150 536.6 363 70.5
QL02p005360 Quercus lobata HOM05D004259 ORTHO05D005014 1.5e-150 536.6 413 65.4
Thecc.05G042500 Theobroma cacao HOM05D004259 ORTHO05D005014 3.4e-150 535.4 361 72.3
EL10Ac3g06655 Beta vulgaris HOM05D004259 ORTHO05D005014 9.8e-150 533.9 364 70.3
Peaxi162Scf00929g00211 Petunia axillaris HOM05D004259 ORTHO05D005014 9.8e-150 533.9 372 71.2
Oeu018211.1 Olea europaea HOM05D004259 ORTHO05D005014 1.7e-149 533.1 376 69.1
CiPaw.15G061500 Carya illinoinensis HOM05D004259 ORTHO05D005014 6.3e-149 531.2 365 70.7
PSO675G0522 Papaver somniferum HOM05D004259 ORTHO05D005014 6.3e-149 531.2 363 71.9
Cpa.g.sc973.4 Carica papaya HOM05D004259 ORTHO05D005014 1.1e-148 530.4 364 71.2
ClCG08G015740 Citrullus lanatus HOM05D004259 ORTHO05D005014 1.1e-148 530.4 372 70.7
MD08G1103300 Malus domestica HOM05D004259 ORTHO05D005014 1.1e-148 530.4 364 71.4
PGSC0003DMG400027003 Solanum tuberosum HOM05D004259 ORTHO05D005014 1.1e-148 530.4 362 71.3
Sopen06g029870 Solanum pennellii HOM05D004259 ORTHO05D005014 1.8e-148 529.6 362 71.3
AUR62022427 Chenopodium quinoa HOM05D004259 ORTHO05D005014 3.1e-148 528.9 364 69.8
Solyc06g073510.3 Solanum lycopersicum HOM05D004259 ORTHO05D005014 3.1e-148 528.9 362 71.3
AUR62039303 Chenopodium quinoa HOM05D004259 ORTHO05D005014 7.0e-148 527.7 364 69.2
RcHm_v2.0_Chr6g0307691 Rosa chinensis HOM05D004259 ORTHO05D005014 1.2e-147 526.9 364 70.3
Aqoxy7G01016 Aquilegia oxysepala HOM05D004259 ORTHO05D005014 1.6e-147 526.6 356 71.9
PSO339G6255 Papaver somniferum HOM05D004259 ORTHO05D005014 3.5e-147 525.4 363 71.6
Lalb_Chr19g0129351 Lupinus albus HOM05D004259 ORTHO05D005014 2.9e-146 522.3 362 69.9
FvH4_2g34610 Fragaria vesca HOM05D004259 ORTHO05D005014 3.8e-146 521.9 364 69.0
Glyma.14G082100 Glycine max HOM05D004259 ORTHO05D005014 6.6e-146 521.2 357 71.1
Nn1g05830 Nelumbo nucifera HOM05D004259 ORTHO05D005014 6.6e-146 521.2 361 70.1
FAN20G1942 Fragaria x ananassa HOM05D004259 ORTHO05D005014 8.6e-146 520.8 364 69.0
FAN15G2861 Fragaria x ananassa HOM05D001625 ORTHO05D005014 4.3e-145 518.5 361 69.3
PSO541G1765 Papaver somniferum HOM05D004259 ORTHO05D005014 9.5e-145 517.3 363 70.2
THA.LOC104806568 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 9.5e-145 517.3 366 68.0
CAN.G65.190 Capsicum annuum HOM05D004259 ORTHO05D005014 1.6e-144 516.5 369 69.4
VMungo0647G0522 Vigna mungo HOM05D004259 ORTHO05D005014 2.1e-144 516.2 360 70.8
PGR031G2227 Punica granatum HOM05D004259 ORTHO05D005014 4.7e-144 515.0 363 70.0
THA.LOC104809222 Tarenaya hassleriana HOM05D004259 ORTHO05D005014 8.0e-144 514.2 367 68.1
Phvul.001G021100 Phaseolus vulgaris HOM05D004259 ORTHO05D005014 1.4e-143 513.5 356 70.2
MBI02_g17334_MAGBIO Magnolia biondii HOM05D004259 ORTHO05D005014 1.8e-143 513.1 393 65.9
SalBow2G1152 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.8e-143 513.1 389 65.6
Sabra03G0064000 Salix brachista HOM05D004259 ORTHO05D005014 3.1e-143 512.3 357 71.1
Lj5g0003666 Lotus japonicus HOM05D004259 ORTHO05D005014 5.2e-143 511.5 361 68.1
SalBow2G2463 Salvia bowleyana HOM05D004259 ORTHO05D005014 8.9e-143 510.8 389 65.3
Nitab4.5_0002664g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-142 510.4 396 65.9
SalBow2G2012 Salvia bowleyana HOM05D004259 ORTHO05D005014 4.4e-142 508.4 389 65.0
Dinv39327 Davidia involucrata HOM05D004259 ORTHO05D005014 1.3e-141 506.9 322 76.1
Sabra11G0061200 Salix brachista HOM05D004259 ORTHO05D005014 1.7e-141 506.5 362 69.9
Nitab4.5_0002045g0130 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.2e-141 506.1 363 69.7
Eucgr.F00239 Eucalyptus grandis HOM05D004259 ORTHO05D005014 2.9e-141 505.8 354 67.2
Haze_17552 Corylus avellana HOM05D004259 ORTHO05D005014 6.4e-141 504.6 366 69.7
unitig_26.g10027 Utricularia gibba HOM05D004259 ORTHO05D005014 1.2e-139 500.4 362 66.9
Nitab4.5_0000111g0020 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.6e-139 500.0 383 67.4
A05p08400 Brassica napus HOM05D004259 ORTHO05D005014 7.8e-139 497.7 365 66.3
BcaB02g09273 Brassica carinata HOM05D004259 ORTHO05D005014 1.3e-138 496.9 365 66.3
Ca_01811_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.9e-138 495.4 361 67.6
Ca_29610_v3 Cicer arietinum L. HOM05D004259 ORTHO05D005014 3.9e-138 495.4 361 67.6
Peaxi162Scf00003g02311 Petunia axillaris HOM05D004259 ORTHO05D005014 8.6e-138 494.2 397 64.7
TPR.G17553 Trifolium pratense HOM05D004259 ORTHO05D005014 8.6e-138 494.2 351 69.5
Carub.0004s1948 Capsella rubella HOM05D004259 ORTHO05D005014 1.1e-137 493.8 365 66.0
BraA05t19805Z Brassica rapa HOM05D004259 ORTHO05D005014 1.5e-137 493.4 365 66.0
AL4G34050 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 2.5e-137 492.7 365 66.0
BcaC02g11869 Brassica carinata HOM05D004259 ORTHO05D005014 3.3e-137 492.3 365 66.0
BolC4t22638H Brassica oleracea HOM05D004259 ORTHO05D005014 5.6e-137 491.5 365 66.3
Thhalv10016846m.g Eutrema salsugineum HOM05D004259 ORTHO05D005014 7.3e-137 491.1 365 65.5
CARHR132030 Cardamine hirsuta HOM05D004259 ORTHO05D005014 9.5e-137 490.7 365 65.5
C04p10400 Brassica napus HOM05D004259 ORTHO05D005014 1.2e-136 490.3 363 65.8
Sp4g19910 Schrenkiella parvula HOM05D004259 ORTHO05D005014 2.1e-136 489.6 365 65.5
CDE10G1325 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 6.2e-136 488.0 355 65.9
Medtr1g019770 Medicago truncatula HOM05D004259 ORTHO05D005014 3.1e-135 485.7 361 67.0
Psat6g012600 Pisum sativum HOM05D004259 ORTHO05D005014 1.5e-134 483.4 361 66.5
Rhsim10G0028600 Rhododendron simsii HOM05D004259 ORTHO05D005014 2.0e-134 483.0 364 67.0
TWI53G0519 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 4.4e-134 481.9 363 66.7
ATR0100G023 Amborella trichopoda HOM05D004259 ORTHO05D005014 1.3e-133 480.3 362 65.7
AT2G37560 Arabidopsis thaliana HOM05D004259 ORTHO05D005014 3.2e-132 475.7 365 62.7
FAN27G2417 Fragaria x ananassa HOM05D004259 ORTHO05D005014 5.4e-132 474.9 364 64.6
SalBow3G4106 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.6e-131 473.4 364 64.6
SGA_v2.0_scaffold204G41641 Striga asiatica HOM05D004259 ORTHO05D005014 4.6e-131 471.9 368 64.7
Sc07g0003460 Simmondsia chinensis HOM05D004259 ORTHO05D005014 1.0e-130 470.7 318 69.5
CSS0037728 Camellia sinensis var. sinensis HOM05D004259 ORTHO05D005014 6.6e-130 468.0 364 65.4
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea HOM05D004259 ORTHO05D005014 4.3e-129 465.3 359 64.6
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea HOM05D004259 ORTHO05D005014 4.3e-129 465.3 359 64.6
Os03g0184700 Oryza sativa ssp. japonica HOM05D004259 ORTHO05D005014 7.3e-129 464.5 353 64.6
Cc10_g04310 Coffea canephora HOM05D004259 ORTHO05D005014 6.2e-128 461.5 364 62.9
GSVIVG01009522001 Vitis vinifera HOM05D004259 ORTHO05D005014 4.9e-125 451.8 298 73.5
MD15G1084600 Malus domestica HOM05D004259 ORTHO05D005014 1.9e-124 449.9 376 61.2
Zm00001eb248940 Zea mays HOM05D004259 ORTHO05D005014 1.9e-124 449.9 357 62.7
Haze_17543 Corylus avellana HOM05D004259 ORTHO05D005014 9.2e-124 447.6 299 72.9
Nitab4.5_0004918g0050 Nicotiana tabacum HOM05D004259 ORTHO05D005014 1.2e-123 447.2 354 63.8
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla HOM05D004259 ORTHO05D005014 3.0e-122 442.6 301 72.4
Glyma.17G243200 Glycine max HOM05D004259 ORTHO05D005014 2.5e-121 439.5 292 72.3
SalBow2G2610 Salvia bowleyana HOM05D004259 ORTHO05D005014 1.2e-118 430.6 389 59.1
Prupe.1G438300 Prunus persica HOM05D004259 ORTHO05D005014 4.4e-118 428.7 298 72.1
Rhsim07G0229700 Rhododendron simsii HOM05D004259 ORTHO05D005014 5.8e-118 428.3 330 64.8
Ah.05g168820 Amaranthus hybridus HOM05D001625 ORTHO05D005014 4.9e-117 425.2 298 67.1
SalBow2G0695 Salvia bowleyana HOM05D004259 ORTHO05D005014 6.4e-109 398.3 287 67.9
Actinidia29866 Actinidia chinensis HOM05D004259 ORTHO05D005014 3.5e-107 392.5 364 57.1
vmacro04457 Vaccinium macrocarpon HOM05D004259 ORTHO05D005014 1.0e-106 391.0 364 58.2
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis HOM05D004259 ORTHO05D005014 9.9e-102 374.4 359 53.5
Pp3c18_14740 Physcomitrium patens HOM05D004259 ORTHO05D005014 7.1e-100 368.2 350 50.9
Rhsim10G0028100 Rhododendron simsii HOM05D004259 ORTHO05D005014 1.2e-99 367.5 364 55.8
SHI12655 Sapria himalayana HOM05D004259 ORTHO05D005014 1.6e-96 357.1 367 53.7
SEGI_21568 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.8e-96 356.3 319 54.2
Mapoly0106s0035 Marchantia polymorpha HOM05D004259 ORTHO05D005014 2.4e-95 353.2 320 52.8
SMO147G0302 Selaginella moellendorffii HOM05D004259 ORTHO05D005014 2.6e-94 349.7 342 50.3
RcHm_v2.0_Chr6g0307531 Rosa chinensis HOM05D004259 ORTHO05D005014 1.0e-93 347.8 358 53.1
COL.COLO4_14836 Corchorus olitorius HOM05D004259 ORTHO05D005014 4.2e-92 342.4 362 51.1
CBR_g6665 Chara braunii HOM05D004259 ORTHO05D005014 3.5e-91 339.3 337 49.6
TWI53G0792 Tripterygium wilfordii HOM05D004259 ORTHO05D005014 2.1e-88 330.1 269 64.7
HPP92_027219 Vanilla planifolia HOM05D004259 ORTHO05D005014 9.1e-63 245.0 152 73.0
MCO16G222 Micromonas commoda HOM05D004259 ORTHO05D005014 1.9e-60 237.3 328 40.5
CDE10G0377 Ceratophyllum demersum HOM05D004259 ORTHO05D005014 1.1e-52 211.5 135 72.6
PRCOL_00004897 Prasinoderma coloniale HOM05D004259 ORTHO05D005014 4.1e-47 193.0 378 33.9
HPP92_027220 Vanilla planifolia HOM05D004259 ORTHO05D005014 3.8e-37 159.8 128 64.8
Gohir.D10G137766 Gossypium hirsutum HOM05D004259 ORTHO05D005014 5.5e-36 156.0 140 55.7
Cre03.g199400 Chlamydomonas reinhardtii HOM05D004259 ORTHO05D005014 2.1e-35 154.1 341 32.0
Nitab4.5_0000017g0120 Nicotiana tabacum HOM05D004259 ORTHO05D005014 2.3e-34 150.6 199 43.7
Aa31LG5G22990 Aethionema arabicum HOM05D004259 ORTHO05D005014 5.9e-30 136.0 138 52.9
Cc00_g16720 Coffea canephora HOM05D004259 ORTHO05D005014 4.3e-28 129.8 116 60.3
AL4G34080 Arabidopsis lyrata HOM05D004259 ORTHO05D005014 3.1e-26 123.6 105 61.9
Gohir.D02G104501 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.5e-25 121.3 104 56.7
Gorai.005G118700 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.5e-25 121.3 106 55.7
Actinidia38053 Actinidia chinensis HOM05D004259 ORTHO05D005014 6.4e-24 115.9 91 63.7
PSO724G0286 Papaver somniferum HOM05D004259 ORTHO05D005014 1.9e-23 114.4 106 55.7
PSO724G0742 Papaver somniferum HOM05D004259 ORTHO05D005014 4.1e-23 113.2 106 55.7
Gorai.011G277900 Gossypium raimondii HOM05D004259 ORTHO05D005014 7.0e-23 112.5 83 67.5
Gohir.D12G080700 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.0e-22 110.9 87 64.4
Cfa024619 Carpinus fangiana HOM05D004259 ORTHO05D005014 2.3e-21 107.5 351 24.8
Gohir.D03G074850 Gossypium hirsutum HOM05D004259 ORTHO05D005014 6.2e-19 99.4 79 63.3
Gohir.D01G124400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 8.1e-19 99.0 78 64.1
Gohir.D02G123750 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.8e-18 97.8 78 62.8
Gohir.D09G120150 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.1e-18 97.1 78 62.8
Gorai.008G056700 Gossypium raimondii HOM05D004259 ORTHO05D005014 3.1e-18 97.1 79 62.0
Gorai.005G130400 Gossypium raimondii HOM05D004259 ORTHO05D005014 5.2e-18 96.3 78 61.5
Gorai.004G133100 Gossypium raimondii HOM05D004259 ORTHO05D005014 6.8e-18 95.9 78 62.8
Gorai.012G099900 Gossypium raimondii HOM05D004259 ORTHO05D005014 8.9e-18 95.5 80 58.8
Cc06_g20720 Coffea canephora HOM05D004259 ORTHO05D005014 2.0e-17 94.4 104 56.7
Gohir.D10G134400 Gossypium hirsutum HOM05D004259 ORTHO05D005014 2.6e-17 94.0 70 64.3
Gohir.D04G089650 Gossypium hirsutum HOM05D004259 ORTHO05D005014 3.4e-17 93.6 80 58.8
Aa31sc112G60 Aethionema arabicum HOM05D004259 ORTHO05D005014 2.2e-16 90.9 80 62.5
SEGI_22221 Sequoiadendron giganteum HOM05D004259 ORTHO05D005014 2.9e-16 90.5 75 58.7
Gorai.006G043100 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.2e-14 85.1 101 50.5
EL10Ac4g08135 Beta vulgaris HOM05D004259 ORTHO05D005014 2.1e-14 84.3 44 90.9
Cc11_g02680 Coffea canephora HOM05D004259 ORTHO05D005014 2.3e-13 80.9 60 68.3
Sabra15G0136400 Salix brachista HOM05D004259 ORTHO05D004947 8.1e-11 72.4 67 62.7
Gohir.D09G088725 Gossypium hirsutum HOM05D004259 ORTHO05D005014 1.1e-10 72.0 51 68.6
Gorai.011G153000 Gossypium raimondii HOM05D004259 ORTHO05D005014 1.4e-10 71.6 89 44.9
Cc00_g00370 Coffea canephora HOM05D004259 ORTHO05D005014 2.6e-09 67.4 52 63.5
Cc09_g06650 Coffea canephora HOM05D004259 ORTHO05D005014 7.6e-09 65.9 42 73.8
Cc01_g09720 Coffea canephora HOM05D004259 ORTHO05D005014 1.7e-08 64.7 43 76.7
Cc02_g31720 Coffea canephora HOM05D004259 ORTHO05D005014 8.4e-08 62.4 42 73.8
Cc10_g11800 Coffea canephora HOM05D006912 ORTHO05D008686 1.6e-06 58.2 43 67.4


User provided reference genes

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