Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0103101 Helianthus annuus HOM05D003665 ORTHO05D004387 2.7e-24 114.4 54 100.0
COL.COLO4_18330 Corchorus olitorius HOM05D003665 ORTHO05D004387 6.6e-10 66.6 32 90.6
Duzib168G1080 Durio zibethinus HOM05D003665 ORTHO05D004387 6.6e-10 66.6 32 90.6
Gohir.D03G134800 Gossypium hirsutum HOM05D003665 ORTHO05D004387 6.6e-10 66.6 32 90.6
Gorai.003G141900 Gossypium raimondii HOM05D003665 ORTHO05D004387 6.6e-10 66.6 32 90.6
HanXRQChr01g0019371 Helianthus annuus HOM05D003665 ORTHO05D004387 6.6e-10 66.6 32 90.6
QL01p022122 Quercus lobata HOM05D003665 ORTHO05D004387 6.6e-10 66.6 35 82.9
Cpa.g.sc216.2 Carica papaya HOM05D003665 ORTHO05D004387 8.6e-10 66.2 37 75.7
Lsat_1_v5_gn_1_64201 Lactuca sativa HOM05D003665 ORTHO05D004387 8.6e-10 66.2 32 87.5
ECA248G0778 Erigeron canadensis HOM05D003665 ORTHO05D004387 1.1e-09 65.9 32 87.5
Gohir.A05G103400 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-09 65.5 32 87.5
Gohir.D05G103100 Gossypium hirsutum HOM05D003665 ORTHO05D004387 1.5e-09 65.5 32 87.5
Gorai.009G107400 Gossypium raimondii HOM05D003665 ORTHO05D004387 1.5e-09 65.5 32 87.5
Lj2C1027G11 Lonicera japonica HOM05D003665 ORTHO05D004387 1.5e-09 65.5 32 87.5
MD11G1136600 Malus domestica HOM05D003665 ORTHO05D004387 1.5e-09 65.5 32 87.5
Nitab4.5_0001211g0250 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.9e-09 65.1 32 84.4
Nitab4.5_0005900g0050 Nicotiana tabacum HOM05D003665 ORTHO05D004387 1.9e-09 65.1 32 84.4
ECA238G1380 Erigeron canadensis HOM05D003665 ORTHO05D004387 2.5e-09 64.7 37 73.0
Gohir.A08G198200 Gossypium hirsutum HOM05D003665 ORTHO05D004387 2.5e-09 64.7 37 75.7
Gohir.A03G033500 Gossypium hirsutum HOM05D003665 ORTHO05D004387 3.3e-09 64.3 32 87.5
Prupe.6G102100 Prunus persica HOM05D003665 ORTHO05D004387 3.3e-09 64.3 32 84.4
Atru.chr3.3619 Acer truncatum HOM05D003665 ORTHO05D004387 4.3e-09 63.9 37 70.3
Atru.chr3.3622 Acer truncatum HOM05D003665 ORTHO05D004387 4.3e-09 63.9 37 70.3
MSTRG.18661 Avicennia marina HOM05D003665 ORTHO05D004387 4.3e-09 63.9 32 84.4
Ca_19262_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 4.3e-09 63.9 43 67.4
Ciclev10028088m.g Citrus clementina HOM05D003665 ORTHO05D004387 4.3e-09 63.9 32 84.4
Glyma.12G172200 Glycine max HOM05D003665 ORTHO05D004387 4.3e-09 63.9 32 84.4
Glyma.13G325700 Glycine max HOM05D003665 ORTHO05D004387 4.3e-09 63.9 32 84.4
Peaxi162Scf00274g00347 Petunia axillaris HOM05D003665 ORTHO05D004387 4.3e-09 63.9 32 84.4
SGA_v2.0_scaffold97G29239 Striga asiatica HOM05D003665 ORTHO05D004387 4.3e-09 63.9 32 84.4
CDE02G0373 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 5.6e-09 63.5 32 84.4
MD03G1118200 Malus domestica HOM05D003665 ORTHO05D004387 5.6e-09 63.5 32 84.4
SalBow3G4611 Salvia bowleyana HOM05D003665 ORTHO05D004387 5.6e-09 63.5 32 84.4
SGA_v2.0_scaffold61G21127 Striga asiatica HOM05D003665 ORTHO05D004387 5.6e-09 63.5 32 84.4
Aqoxy4G03025 Aquilegia oxysepala HOM05D003665 ORTHO05D004387 7.3e-09 63.2 32 81.2
EL10Ac2g02422 Beta vulgaris HOM05D003665 ORTHO05D004387 7.3e-09 63.2 32 81.2
CSS0036787 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 7.3e-09 63.2 32 84.4
Gorai.004G229200 Gossypium raimondii HOM05D003665 ORTHO05D004387 7.3e-09 63.2 37 73.0
Phvul.005G134800 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 7.3e-09 63.2 32 81.2
VMungo1080G0406 Vigna mungo HOM05D003665 ORTHO05D004387 7.3e-09 63.2 32 81.2
Actinidia07137 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.5e-09 62.8 32 84.4
Actinidia12926 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.5e-09 62.8 32 84.4
Actinidia24103 Actinidia chinensis HOM05D003665 ORTHO05D004387 9.5e-09 62.8 32 84.4
arahy.Tifrunner.gnm1.ann1.IYQC31 Arachis hypogaea HOM05D003665 ORTHO05D004387 9.5e-09 62.8 32 78.1
arahy.Tifrunner.gnm1.ann1.RTB9TW Arachis hypogaea HOM05D003665 ORTHO05D004387 9.5e-09 62.8 32 78.1
Migut.D02227 Erythranthe guttata HOM05D003665 ORTHO05D004387 9.5e-09 62.8 32 84.4
Medtr4g059000 Medicago truncatula HOM05D003665 ORTHO05D004387 9.5e-09 62.8 43 65.1
RcHm_v2.0_Chr5g0058821 Rosa chinensis HOM05D003665 ORTHO05D004387 9.5e-09 62.8 32 81.2
VMungo1127G1530 Vigna mungo HOM05D003665 ORTHO05D004387 9.5e-09 62.8 32 81.2
Lj3g0015527 Lotus japonicus HOM05D003665 ORTHO05D004387 1.2e-08 62.4 32 81.2
MBI05_g08786_MAGBIO Magnolia biondii HOM05D003665 ORTHO05D004387 1.2e-08 62.4 32 81.2
Solyc03g115810.3 Solanum lycopersicum HOM05D003665 ORTHO05D004387 1.2e-08 62.4 32 84.4
Sopen03g034790 Solanum pennellii HOM05D003665 ORTHO05D004387 1.2e-08 62.4 32 84.4
TPR.G35439 Trifolium pratense HOM05D003665 ORTHO05D004387 1.2e-08 62.4 42 66.7
Ah.12g061180 Amaranthus hybridus HOM05D003665 ORTHO05D004387 1.6e-08 62.0 32 78.1
CSS0007464 Camellia sinensis var. sinensis HOM05D003665 ORTHO05D004387 1.6e-08 62.0 32 78.1
Ca_01409_v3 Cicer arietinum L. HOM05D003665 ORTHO05D004387 1.6e-08 62.0 42 64.3
Nn2g12882 Nelumbo nucifera HOM05D003665 ORTHO05D004387 1.6e-08 62.0 32 81.2
vmacro03198 Vaccinium macrocarpon HOM05D003665 ORTHO05D004387 1.6e-08 62.0 32 84.4
CANSAT54G1114 Cannabis sativa HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 78.1
Cfa011312 Carpinus fangiana HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 81.2
AUR62020295 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 78.1
AUR62037705 Chenopodium quinoa HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 78.1
Haze_23819 Corylus avellana HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 81.2
FvH4_3g32210 Fragaria vesca HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 78.1
FAN16G1206 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 78.1
FAN21G1776 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 78.1
FAN25G3303 Fragaria x ananassa HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 78.1
Hma1.2p1_0058F.1_g032480 Hydrangea macrophylla HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 84.4
Manes.11G145800 Manihot esculenta HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 81.2
Thecc.09G341400 Theobroma cacao HOM05D003665 ORTHO05D004387 2.1e-08 61.6 32 84.4
TPR.G11547 Trifolium pratense HOM05D003665 ORTHO05D004387 2.1e-08 61.6 35 71.4
Medtr2g094470 Medicago truncatula HOM05D003665 ORTHO05D004387 2.8e-08 61.2 32 78.1
TWI31G1339 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 2.8e-08 61.2 32 78.1
ClCG01G013730 Citrullus lanatus HOM05D003665 ORTHO05D004387 3.6e-08 60.8 32 81.2
MELO3C004874.2 Cucumis melo HOM05D003665 ORTHO05D004387 3.6e-08 60.8 32 81.2
CsaV3_1G014040 Cucumis sativus L. HOM05D003665 ORTHO05D004387 3.6e-08 60.8 32 81.2
HanXRQChr14g0452781 Helianthus annuus HOM05D003665 ORTHO05D004387 3.6e-08 60.8 43 60.5
Lj3g0004290 Lotus japonicus HOM05D003665 ORTHO05D004387 3.6e-08 60.8 32 81.2
Lalb_Chr19g0137231 Lupinus albus HOM05D003665 ORTHO05D004387 3.6e-08 60.8 32 78.1
Lalb_Chr24g0394651 Lupinus albus HOM05D003665 ORTHO05D004387 3.6e-08 60.8 32 78.1
Phvul.011G079600 Phaseolus vulgaris HOM05D003665 ORTHO05D004387 3.6e-08 60.8 32 78.1
CDE08G0353 Ceratophyllum demersum HOM05D003665 ORTHO05D004387 4.7e-08 60.5 32 81.2
Dinv09884 Davidia involucrata HOM05D003665 ORTHO05D004387 4.7e-08 60.5 31 83.9
Lalb_Chr22g0350251 Lupinus albus HOM05D003665 ORTHO05D004387 4.7e-08 60.5 31 80.6
Aa31LG5G7830 Aethionema arabicum HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
BcaB01g03101 Brassica carinata HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
BcaB06g25420 Brassica carinata HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
BcaC01g04965 Brassica carinata HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
A03p26380 Brassica napus HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
C03p31650 Brassica napus HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
C04p23090 Brassica napus HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
BolC3t15507H Brassica oleracea HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
BolC4t23802H Brassica oleracea HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
BraA03t11853Z Brassica rapa HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
Carub.0004s0931 Capsella rubella HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
CARHR121340 Cardamine hirsuta HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
Thhalv10016386m.g Eutrema salsugineum HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
Sabra09G0007600 Salix brachista HOM05D003665 ORTHO05D004387 6.1e-08 60.1 32 78.1
Sp4g11190 Schrenkiella parvula HOM05D003665 ORTHO05D004387 6.1e-08 60.1 36 66.7
Sed0022671 Sechium edule HOM05D003665 ORTHO05D004387 6.1e-08 60.1 32 81.2
Hund03712 Selenicereus undatus HOM05D003665 ORTHO05D004387 6.1e-08 60.1 32 75.0
Sc06g0010260 Simmondsia chinensis HOM05D003665 ORTHO05D004387 6.1e-08 60.1 31 77.4
TWI79G0002 Tripterygium wilfordii HOM05D003665 ORTHO05D004387 6.1e-08 60.1 32 81.2
Eucgr.B02502 Eucalyptus grandis HOM05D003665 ORTHO05D004387 8.0e-08 59.7 32 78.1
FAN11G0686 Fragaria x ananassa HOM05D003665 ORTHO05D004387 8.0e-08 59.7 31 77.4
Psat5g278960 Pisum sativum HOM05D003665 ORTHO05D004387 8.0e-08 59.7 32 78.1
Potri.009G014400 Populus trichocarpa HOM05D003665 ORTHO05D004387 8.0e-08 59.7 32 81.2
GSVIVG01025191001 Vitis vinifera HOM05D003665 ORTHO05D004387 1.0e-07 59.3 33 78.8
A07p18960 Brassica napus HOM05D003665 ORTHO05D004387 1.4e-07 58.9 36 63.9
BraA07t29601Z Brassica rapa HOM05D003665 ORTHO05D004387 1.4e-07 58.9 36 63.9
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.4e-07 58.9 31 80.6
CiPaw.13G113600 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.4e-07 58.9 32 78.1
Cc00_g12880 Coffea canephora HOM05D003665 ORTHO05D004387 1.4e-07 58.9 31 77.4
PGR119G2069 Punica granatum HOM05D003665 ORTHO05D004387 1.4e-07 58.9 32 78.1
ATR0033G036 Amborella trichopoda HOM05D003665 ORTHO05D004387 1.8e-07 58.5 32 78.1
CiPaw.14G080900 Carya illinoinensis HOM05D003665 ORTHO05D004387 1.8e-07 58.5 32 75.0
Lsat_1_v5_gn_2_100120 Lactuca sativa HOM05D003665 ORTHO05D004387 1.8e-07 58.5 43 62.8
TAR369G0153 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.8e-07 58.5 32 75.0
TAR623G1097 Trochodendron aralioides HOM05D003665 ORTHO05D004387 1.8e-07 58.5 32 75.0
AL4G21640 Arabidopsis lyrata HOM05D003665 ORTHO05D004387 2.3e-07 58.2 36 66.7
AT2G28390 Arabidopsis thaliana HOM05D003665 ORTHO05D004387 2.3e-07 58.2 36 66.7
arahy.Tifrunner.gnm1.ann1.567MYZ Arachis hypogaea HOM05D003665 ORTHO05D004387 2.3e-07 58.2 32 78.1
arahy.Tifrunner.gnm1.ann1.B5LWM3 Arachis hypogaea HOM05D003665 ORTHO05D004387 2.3e-07 58.2 32 78.1
Dinv32740 Davidia involucrata HOM05D003665 ORTHO05D004387 2.3e-07 58.2 32 78.1
Os01g0976000 Oryza sativa ssp. japonica HOM05D003665 ORTHO05D004387 2.3e-07 58.2 32 75.0
Psat0s134g0040 Pisum sativum HOM05D003665 ORTHO05D004387 2.3e-07 58.2 31 74.2
THA.LOC104815747 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 2.3e-07 58.2 36 63.9
HPP92_006598 Vanilla planifolia HOM05D003665 ORTHO05D004387 2.3e-07 58.2 32 78.1
Sabra04G0142700 Salix brachista HOM05D003665 ORTHO05D004387 5.2e-07 57.0 32 78.1
Nitab4.5_0001195g0040 Nicotiana tabacum HOM05D003665 ORTHO05D004387 6.8e-07 56.6 32 68.8
Oeu030188.3 Olea europaea HOM05D003665 ORTHO05D004387 6.8e-07 56.6 30 76.7
THA.LOC104826364 Tarenaya hassleriana HOM05D003665 ORTHO05D004387 6.8e-07 56.6 36 63.9
Potri.004G211200 Populus trichocarpa HOM05D003665 ORTHO05D004387 8.9e-07 56.2 32 75.0
Zm00001eb139700 Zea mays HOM05D003665 ORTHO05D004387 8.9e-07 56.2 30 76.7
Duzib170G0108 Durio zibethinus HOM05D003665 ORTHO05D004387 1.2e-06 55.8 29 86.2
DCAR_006064 Daucus carota HOM05D003665 ORTHO05D004387 2.0e-06 55.1 31 71.0
Nitab4.5_0001997g0130 Nicotiana tabacum HOM05D003665 ORTHO05D004387 2.6e-06 54.7 32 65.6
SEGI_12034 Sequoiadendron giganteum HOM05D003665 ORTHO05D004387 2.6e-06 54.7 32 68.8
Peaxi162Scf00106g00431 Petunia axillaris HOM05D003665 ORTHO05D004387 7.5e-06 53.1 31 71.0
PGR102G1414 Punica granatum HOM05D003665 ORTHO05D004387 9.8e-06 52.8 31 71.0


User provided reference genes

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