Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0102481 Helianthus annuus HOM05D006511 ORTHO05D007567 1.9e-238 828.9 470 100.0
HanXRQChr04g0102471 Helianthus annuus HOM05D006511 ORTHO05D007567 5.3e-132 475.3 259 98.1
Lsat_1_v5_gn_1_24541 Lactuca sativa HOM05D006511 ORTHO05D007567 3.2e-92 343.2 280 68.6
ECA247G1184 Erigeron canadensis HOM05D006511 ORTHO05D007567 8.6e-90 335.1 275 68.4
Dinv22148 Davidia involucrata HOM05D006511 ORTHO05D007567 5.8e-78 295.8 284 58.5
RcHm_v2.0_Chr6g0249621 Rosa chinensis HOM05D006511 ORTHO05D007567 4.3e-73 279.6 285 53.0
QL09p001374 Quercus lobata HOM05D006511 ORTHO05D007567 3.8e-69 266.5 285 53.0
CSS0025861 Camellia sinensis var. sinensis HOM05D006511 ORTHO05D007567 1.4e-68 264.6 266 56.4
Sabra13G0081400 Salix brachista HOM05D006511 ORTHO05D007567 1.2e-67 261.5 283 50.5
Potri.013G095400 Populus trichocarpa HOM05D006511 ORTHO05D007567 1.6e-67 261.2 284 49.6
FAN19G0686 Fragaria x ananassa HOM05D006511 ORTHO05D007567 3.5e-67 260.0 285 50.2
MD05G1006300 Malus domestica HOM05D006511 ORTHO05D007567 4.6e-67 259.6 275 52.7
FvH4_2g00330 Fragaria vesca HOM05D006511 ORTHO05D007567 1.7e-66 257.7 285 48.8
TAR636G2957 Trochodendron aralioides HOM05D006511 ORTHO05D007567 5.1e-66 256.1 265 54.7
Actinidia29367 Actinidia chinensis HOM05D006511 ORTHO05D007567 6.6e-66 255.8 281 53.4
DCAR_014062 Daucus carota HOM05D006511 ORTHO05D007567 6.6e-66 255.8 282 52.5
CiPaw.03G012800 Carya illinoinensis HOM05D006511 ORTHO05D007567 3.3e-65 253.4 279 50.5
FAN24G0692 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.3e-65 253.1 284 48.2
Sc01g0000050 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.5e-62 244.6 273 51.3
FAN20G0885 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.5e-62 243.0 290 47.6
Manes.18G109250 Manihot esculenta HOM05D006511 ORTHO05D007567 4.5e-62 243.0 283 49.5
Prupe.8G003600 Prunus persica HOM05D006511 ORTHO05D007567 4.5e-62 243.0 269 50.9
Thecc.08G168400 Theobroma cacao HOM05D006511 ORTHO05D007567 7.6e-62 242.3 281 47.7
Hund17299 Selenicereus undatus HOM05D006511 ORTHO05D007567 2.2e-61 240.7 273 49.1
Carub.0001s3169 Capsella rubella HOM05D006511 ORTHO05D007567 6.4e-61 239.2 263 52.9
Phvul.011G215700 Phaseolus vulgaris HOM05D006511 ORTHO05D007567 1.4e-60 238.0 284 47.2
Psat7g227400 Pisum sativum HOM05D006511 ORTHO05D007567 3.2e-60 236.9 281 46.6
BcaB03g13696 Brassica carinata HOM05D006511 ORTHO05D007567 7.1e-60 235.7 260 51.9
CARHR032940 Cardamine hirsuta HOM05D006511 ORTHO05D007567 7.1e-60 235.7 260 50.4
THA.LOC104815798 Tarenaya hassleriana HOM05D006511 ORTHO05D007567 7.1e-60 235.7 262 50.0
BcaC05g27802 Brassica carinata HOM05D006511 ORTHO05D007567 9.3e-60 235.3 260 51.2
SGA_v2.0_scaffold118G32636 Striga asiatica HOM05D006511 ORTHO05D007567 1.2e-59 235.0 280 47.5
Nn5g27238 Nelumbo nucifera HOM05D006511 ORTHO05D007567 6.0e-59 232.6 286 46.9
AT1G33500 Arabidopsis thaliana HOM05D006511 ORTHO05D007567 1.3e-58 231.5 263 50.2
Sed0008597 Sechium edule HOM05D006511 ORTHO05D007567 1.3e-58 231.5 290 47.6
PSO384G4286 Papaver somniferum HOM05D006511 ORTHO05D007567 5.1e-58 229.6 272 49.6
TWI12G0802 Tripterygium wilfordii HOM05D006511 ORTHO05D007567 6.7e-58 229.2 261 49.8
Gohir.D08G249200 Gossypium hirsutum HOM05D006511 ORTHO05D007567 2.5e-57 227.3 280 46.1
Gorai.004G265800 Gossypium raimondii HOM05D006511 ORTHO05D007567 4.3e-57 226.5 280 46.1
Sp1g28980 Schrenkiella parvula HOM05D006511 ORTHO05D007567 4.3e-57 226.5 263 49.0
TPR.G34175 Trifolium pratense HOM05D006511 ORTHO05D007567 3.7e-56 223.4 288 45.1
Rhsim02G0172300 Rhododendron simsii HOM05D006511 ORTHO05D007567 8.1e-56 222.2 269 49.8
BolC5t32531H Brassica oleracea HOM05D006511 ORTHO05D007567 1.1e-55 221.9 285 46.7
C05p38000 Brassica napus HOM05D006511 ORTHO05D007567 1.4e-55 221.5 285 46.7
BraA05t21311Z Brassica rapa HOM05D006511 ORTHO05D007567 1.4e-55 221.5 275 48.0
Migut.C01397 Erythranthe guttata HOM05D006511 ORTHO05D007567 6.9e-55 219.2 265 46.4
CANSAT56G0749 Cannabis sativa HOM05D006511 ORTHO05D007567 9.0e-55 218.8 282 45.0
VMungo1127G0740 Vigna mungo HOM05D006511 ORTHO05D007567 2.0e-54 217.6 325 40.6
Sopen11g020540 Solanum pennellii HOM05D006511 ORTHO05D007567 1.7e-53 214.5 272 45.6
Solyc11g045100.2 Solanum lycopersicum HOM05D006511 ORTHO05D007567 2.5e-52 210.7 267 45.3
Cfa008039 Carpinus fangiana HOM05D006511 ORTHO05D007567 4.2e-52 209.9 285 45.3
arahy.Tifrunner.gnm1.ann1.HN79E8 Arachis hypogaea HOM05D006511 ORTHO05D007567 7.1e-52 209.1 333 39.9
SalBow7G4276 Salvia bowleyana HOM05D006511 ORTHO05D007567 4.6e-51 206.5 313 41.2
Glyma.12G241400 Glycine max HOM05D006511 ORTHO05D007567 1.0e-50 205.3 265 43.8
Gohir.A08G228900 Gossypium hirsutum HOM05D006511 ORTHO05D007567 1.3e-50 204.9 262 45.8
Aa31LG6G7970 Aethionema arabicum HOM05D006511 ORTHO05D007567 1.8e-50 204.5 303 43.2
AUR62038542 Chenopodium quinoa HOM05D006511 ORTHO05D007567 7.4e-49 199.1 261 44.8
Lj3g0014137 Lotus japonicus HOM05D006511 ORTHO05D007567 4.8e-48 196.4 277 41.9
MBI15_g27824_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 4.8e-48 196.4 268 44.4
ClCG11G008290 Citrullus lanatus HOM05D006511 ORTHO05D007567 2.0e-46 191.0 360 37.2
Hma1.2p1_1405F.1_g281380 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 7.6e-46 189.1 143 70.6
PGSC0003DMG401019059 Solanum tuberosum HOM05D006511 ORTHO05D007567 1.3e-45 188.3 255 43.1
Thhalv10008295m.g Eutrema salsugineum HOM05D006511 ORTHO05D007567 1.7e-45 188.0 303 40.3
MBI15_g27821_MAGBIO Magnolia biondii HOM05D006511 ORTHO05D007567 8.4e-45 185.7 268 42.5
Ca_13616_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.9e-44 184.5 282 40.8
Ca_30187_v3 Cicer arietinum L. HOM05D006511 ORTHO05D007567 1.9e-44 184.5 282 40.8
Haze_13990 Corylus avellana HOM05D006511 ORTHO05D007567 1.6e-43 181.4 263 42.6
MELO3C008102.2 Cucumis melo HOM05D006511 ORTHO05D007567 3.0e-42 177.2 286 38.5
FvH4_2g04930 Fragaria vesca HOM05D006511 ORTHO05D007567 7.4e-41 172.6 216 45.4
HPP92_003819 Vanilla planifolia HOM05D006511 ORTHO05D007567 9.7e-41 172.2 262 38.9
FAN24G3334 Fragaria x ananassa HOM05D006511 ORTHO05D007567 4.8e-40 169.9 221 45.2
Aqoxy6G00041 Aquilegia oxysepala HOM05D006511 ORTHO05D007567 1.8e-39 167.9 265 41.1
EL10Ac1g01283 Beta vulgaris HOM05D006511 ORTHO05D007567 6.9e-39 166.0 269 37.9
FAN20G1821 Fragaria x ananassa HOM05D006511 ORTHO05D007567 1.5e-38 164.9 200 48.0
CsaV3_2G033310 Cucumis sativus L. HOM05D006511 ORTHO05D007567 7.7e-38 162.5 295 35.9
Atru.chr13.2578 Acer truncatum HOM05D006511 ORTHO05D007567 2.2e-37 161.0 279 38.7
Ah.13g067720 Amaranthus hybridus HOM05D006511 ORTHO05D007567 2.1e-35 154.5 240 40.4
COL.COLO4_05044 Corchorus olitorius HOM05D006511 ORTHO05D007567 2.1e-35 154.5 209 44.5
Sc01g0000180 Simmondsia chinensis HOM05D006511 ORTHO05D007567 4.6e-35 153.3 128 67.2
Lj8A308G12 Lonicera japonica HOM05D006511 ORTHO05D007567 1.1e-33 148.7 245 41.2
arahy.Tifrunner.gnm1.ann1.VJ45CS Arachis hypogaea HOM05D006511 ORTHO05D007567 2.5e-33 147.5 128 63.3
Cc10_g16070 Coffea canephora HOM05D006511 ORTHO05D007567 4.3e-33 146.7 196 44.9
Eucgr.F04079 Eucalyptus grandis HOM05D006511 ORTHO05D007567 1.7e-32 144.8 128 60.9
Medtr1g067720 Medicago truncatula HOM05D006511 ORTHO05D007567 1.1e-31 142.1 141 56.0
CDE10G1127 Ceratophyllum demersum HOM05D006511 ORTHO05D007567 1.4e-31 141.7 260 36.2
PGR004G0115 Punica granatum HOM05D006511 ORTHO05D007567 2.4e-31 141.0 228 37.7
AL1G47890 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 4.1e-31 140.2 183 45.4
Ciclev10023919m.g Citrus clementina HOM05D006511 ORTHO05D007567 5.3e-31 139.8 142 57.7
unitig_749.g13868 Utricularia gibba HOM05D006511 ORTHO05D007567 1.2e-30 138.7 260 35.4
Hma1.2p1_1476F.1_g285820 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 1.5e-30 138.3 160 50.0
AUR62013391 Chenopodium quinoa HOM05D006511 ORTHO05D007567 4.2e-28 130.2 224 37.9
Peaxi162Scf00078g01026 Petunia axillaris HOM05D006511 ORTHO05D007567 7.2e-28 129.4 270 32.6
COL.COLO4_05796 Corchorus olitorius HOM05D006511 ORTHO05D007567 3.6e-27 127.1 340 32.4
MSTRG.1607 Avicennia marina HOM05D006511 ORTHO05D007567 7.4e-25 119.4 174 41.4
Haze_13992 Corylus avellana HOM05D006511 ORTHO05D007567 2.4e-23 114.4 81 74.1
ATR1204G001 Amborella trichopoda HOM05D006511 ORTHO05D007567 9.1e-23 112.5 190 37.4
Os08g0320300 Oryza sativa ssp. japonica HOM05D006511 ORTHO05D007567 2.6e-22 110.9 142 43.7
Cpa.g.sc142.8 Carica papaya HOM05D006511 ORTHO05D007567 1.0e-21 109.0 213 35.2
Nitab4.5_0000009g0490 Nicotiana tabacum HOM05D006511 ORTHO05D007567 1.3e-21 108.6 265 30.9
Nitab4.5_0001489g0030 Nicotiana tabacum HOM05D006511 ORTHO05D007567 1.3e-21 108.6 247 33.2
Lsat_1_v5_gn_0_19000 Lactuca sativa HOM05D006511 ORTHO05D007567 5.0e-21 106.7 111 53.2
Medtr1g067710 Medicago truncatula HOM05D006511 ORTHO05D007567 7.2e-20 102.8 108 43.5
Zm00001eb028220 Zea mays HOM05D006511 ORTHO05D007567 9.4e-20 102.4 232 31.9
Sc01g0000190 Simmondsia chinensis HOM05D006511 ORTHO05D007567 1.4e-18 98.6 105 44.8
Lalb_Chr19g0131901 Lupinus albus HOM05D006511 ORTHO05D007567 1.8e-18 98.2 108 42.6
vmacro11027 Vaccinium macrocarpon HOM05D006511 ORTHO05D007567 4.0e-18 97.1 152 42.1
arahy.Tifrunner.gnm1.ann1.FKD4F4 Arachis hypogaea HOM05D006511 ORTHO05D007567 6.7e-18 96.3 108 40.7
Eucgr.F04078 Eucalyptus grandis HOM05D006511 ORTHO05D007567 6.7e-18 96.3 109 41.3
AL1G48040 Arabidopsis lyrata HOM05D006511 ORTHO05D007567 2.8e-16 90.9 112 42.0
COL.COLO4_36458 Corchorus olitorius HOM05D006511 ORTHO05D007567 1.3e-13 82.0 80 56.2
Nn5g27242 Nelumbo nucifera HOM05D006511 ORTHO05D007567 5.0e-13 80.1 85 48.2
Lalb_Chr19g0131891 Lupinus albus HOM05D006511 ORTHO05D007567 6.5e-13 79.7 76 55.3
Hma1.2p1_1476F.1_g285810 Hydrangea macrophylla HOM05D006511 ORTHO05D007567 3.6e-11 73.9 58 60.3
Ciclev10023084m.g Citrus clementina HOM05D006511 ORTHO05D007567 4.7e-11 73.6 99 39.4
HanXRQChr09g0250421 Helianthus annuus HOM05D006511 ORTHO05D007567 1.2e-09 68.9 83 49.4
Lalb_Chr19g0131881 Lupinus albus HOM05D006511 ORTHO05D007567 3.4e-09 67.4 48 70.8
SMO137G0232 Selaginella moellendorffii HOM05D006511 ORTHO05D007567 3.4e-09 67.4 125 29.6
Haze_13997 Corylus avellana HOM05D006511 ORTHO05D007567 1.2e-06 58.9 60 50.0
Mapoly0161s0026 Marchantia polymorpha HOM05D006511 ORTHO05D007567 4.5e-06 57.0 264 20.8


User provided reference genes

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