Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 1.8e-44 182.2 93 100.0
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 9.8e-38 159.8 91 90.1
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 1.7e-34 149.1 91 82.4
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 4.0e-31 137.9 91 74.7
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 2.0e-30 135.6 91 74.7
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 5.8e-30 134.0 84 77.4
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.6e-27 125.9 90 66.7
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.1e-27 125.6 91 65.9
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 1.7e-26 122.5 91 62.6
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.3e-26 122.1 90 66.7
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.0e-26 121.7 89 69.7
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.9e-26 121.3 89 69.7
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 3.9e-26 121.3 91 65.9
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 3.9e-26 121.3 91 68.1
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 6.6e-26 120.6 90 65.6
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 6.6e-26 120.6 90 65.6
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.1e-25 119.8 90 65.6
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 1.1e-25 119.8 91 58.2
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 1.1e-25 119.8 90 64.4
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 1.1e-25 119.8 90 65.6
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.1e-25 119.8 91 65.9
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 1.5e-25 119.4 84 67.9
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 1.5e-25 119.4 90 63.3
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 1.5e-25 119.4 84 66.7
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.9e-25 119.0 90 64.4
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 1.9e-25 119.0 84 67.9
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 2.5e-25 118.6 83 67.5
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 3.3e-25 118.2 83 67.5
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 3.3e-25 118.2 83 66.3
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 3.3e-25 118.2 83 66.3
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 3.3e-25 118.2 83 66.3
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 4.3e-25 117.9 90 60.0
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 5.6e-25 117.5 83 67.5
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 5.6e-25 117.5 90 63.3
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 7.3e-25 117.1 90 63.3
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 7.3e-25 117.1 89 59.6
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 7.3e-25 117.1 89 65.2
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 9.5e-25 116.7 89 58.4
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 1.2e-24 116.3 89 64.0
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 1.6e-24 115.9 86 60.5
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 2.8e-24 115.2 84 63.1
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 3.6e-24 114.8 90 57.8
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 4.7e-24 114.4 83 62.7
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 4.7e-24 114.4 89 57.3
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 6.2e-24 114.0 86 60.5
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 8.1e-24 113.6 84 66.7
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 8.1e-24 113.6 83 62.7
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 8.1e-24 113.6 83 66.3
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 1.1e-23 113.2 84 60.7
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 1.1e-23 113.2 88 58.0
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 1.4e-23 112.8 87 64.4
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.8e-23 112.5 89 62.9
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 1.8e-23 112.5 82 62.2
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 1.8e-23 112.5 91 60.4
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 1.8e-23 112.5 83 62.7
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 2.3e-23 112.1 89 60.7
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 2.3e-23 112.1 83 65.1
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 2.3e-23 112.1 90 58.9
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 3.1e-23 111.7 82 62.2
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 3.1e-23 111.7 81 64.2
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 3.1e-23 111.7 88 59.1
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 4.0e-23 111.3 83 63.9
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 5.2e-23 110.9 84 64.3
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 5.2e-23 110.9 88 60.2
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 5.2e-23 110.9 91 60.4
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 5.2e-23 110.9 88 59.1
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 6.8e-23 110.5 81 64.2
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 6.8e-23 110.5 85 63.5
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 8.9e-23 110.2 82 62.2
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 8.9e-23 110.2 91 57.1
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 8.9e-23 110.2 88 60.2
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 1.5e-22 109.4 80 73.8
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 1.5e-22 109.4 90 62.2
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 2.0e-22 109.0 83 65.1
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.0e-22 109.0 88 56.8
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.0e-22 109.0 88 60.2
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 2.0e-22 109.0 88 60.2
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.6e-22 108.6 87 62.1
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 3.4e-22 108.2 84 60.7
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 3.4e-22 108.2 89 62.9
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 3.4e-22 108.2 83 60.2
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 5.8e-22 107.5 76 68.4
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 5.8e-22 107.5 87 62.1
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 1.3e-21 106.3 83 57.8
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 2.2e-21 105.5 83 62.7
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 2.9e-21 105.1 89 57.3
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 4.9e-21 104.4 87 59.8
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 4.9e-21 104.4 87 59.8
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 4.9e-21 104.4 87 59.8
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.1e-20 103.2 91 51.6
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.1e-20 103.2 78 62.8
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 9.2e-20 100.1 76 61.8
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 1.2e-19 99.8 69 68.1
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.7e-19 98.6 68 67.6
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 3.5e-19 98.2 69 68.1
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 1.0e-18 96.7 88 52.3
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 3.0e-18 95.1 83 57.8
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 3.0e-18 95.1 83 57.8
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 6.6e-18 94.0 83 57.8
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 6.6e-18 94.0 89 48.3
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 8.6e-18 93.6 82 54.9
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 8.6e-18 93.6 82 54.9
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 8.6e-18 93.6 89 49.4
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 1.1e-17 93.2 83 56.6
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 1.1e-17 93.2 82 53.7
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 3.3e-17 91.7 80 56.2
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 4.3e-17 91.3 80 56.2
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 4.3e-17 91.3 80 56.2
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 5.6e-17 90.9 87 49.4
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 5.6e-17 90.9 83 54.2
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 7.3e-17 90.5 80 56.2
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 7.3e-17 90.5 80 56.2
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 7.3e-17 90.5 90 48.9
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 7.3e-17 90.5 77 58.4
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 9.6e-17 90.1 80 55.0
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 9.6e-17 90.1 80 55.0
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 1.2e-16 89.7 83 53.0
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 1.6e-16 89.4 80 55.0
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 2.8e-16 88.6 80 55.0
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 2.8e-16 88.6 80 55.0
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 3.6e-16 88.2 80 55.0
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 4.7e-16 87.8 83 50.6
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 6.2e-16 87.4 80 53.8
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 6.2e-16 87.4 80 55.0
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 8.1e-16 87.0 80 53.8
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 1.8e-15 85.9 82 53.7
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 2.4e-15 85.5 79 53.2
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 2.4e-15 85.5 80 52.5
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 3.1e-15 85.1 80 53.8
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 3.1e-15 85.1 80 53.8
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 3.1e-15 85.1 80 53.8
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 4.4e-14 81.3 80 48.8
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 5.8e-14 80.9 93 46.2
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 7.6e-14 80.5 73 53.4
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 2.2e-13 79.0 62 66.1
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 4.9e-13 77.8 73 53.4
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 4.9e-13 77.8 73 53.4
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 6.4e-13 77.4 73 53.4
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 1.4e-12 76.3 73 52.1
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 1.9e-12 75.9 60 56.7
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 7.1e-12 73.9 81 50.6
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 4.6e-11 71.2 79 41.8
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 1.1e-09 66.6 83 44.6
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 1.1e-09 66.6 56 57.1
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 9.6e-09 63.5 65 49.2
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 9.6e-09 63.5 83 43.4
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 2.8e-08 62.0 82 45.1
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.4e-07 59.7 66 47.0
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 4.0e-07 58.2 79 38.0


User provided reference genes

Program Settings