Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0100841 Helianthus annuus HOM05D000069 ORTHO05D224206 2.4e-50 201.8 99 100.0
HanXRQChr04g0100661 Helianthus annuus HOM05D000069 ORTHO05D219619 1.1e-34 149.8 105 77.1
HanXRQChr04g0101471 Helianthus annuus HOM05D000069 ORTHO05D224143 3.1e-34 148.3 105 77.1
HanXRQChr04g0101001 Helianthus annuus HOM05D000069 ORTHO05D012226 1.6e-33 146.0 96 78.1
HanXRQChr04g0096921 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0096991 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0100681 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0100691 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0100721 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0100811 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0101121 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0101131 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0101371 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0101381 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0101391 Helianthus annuus HOM05D000069 ORTHO05D012226 2.7e-33 145.2 104 76.0
HanXRQChr04g0095351 Helianthus annuus HOM05D000069 ORTHO05D012226 3.5e-33 144.8 104 76.0
HanXRQChr04g0095381 Helianthus annuus HOM05D000069 ORTHO05D012226 3.5e-33 144.8 104 76.0
HanXRQChr12g0357221 Helianthus annuus HOM05D000069 ORTHO05D012226 3.5e-33 144.8 104 76.0
HanXRQChr04g0100651 Helianthus annuus HOM05D000069 ORTHO05D012226 7.8e-33 143.7 103 75.7
HanXRQChr04g0100621 Helianthus annuus HOM05D000069 ORTHO05D219829 1.1e-31 139.8 114 70.2
HanXRQChr04g0100641 Helianthus annuus HOM05D000069 ORTHO05D012226 1.1e-31 139.8 96 76.0
HanXRQChr04g0101031 Helianthus annuus HOM05D000069 ORTHO05D222024 1.1e-31 139.8 114 70.2
HanXRQChr04g0100801 Helianthus annuus HOM05D000069 ORTHO05D224690 1.5e-31 139.4 96 75.0
HanXRQChr04g0100991 Helianthus annuus HOM05D000069 ORTHO05D226106 1.9e-31 139.0 114 69.3
HanXRQChr04g0100631 Helianthus annuus HOM05D000069 ORTHO05D012226 3.3e-31 138.3 105 71.4
HanXRQChr04g0101481 Helianthus annuus HOM05D000069 ORTHO05D012226 1.2e-25 119.8 89 74.2
HanXRQChr04g0101411 Helianthus annuus HOM05D000069 ORTHO05D221438 1.3e-16 89.7 44 93.2
ECA247G3234 Erigeron canadensis HOM05D000069 ORTHO05D000060 1.1e-10 70.1 104 41.3
ECA247G3505 Erigeron canadensis HOM05D000069 ORTHO05D000060 1.1e-10 70.1 108 40.7
HPP92_012751 Vanilla planifolia HOM05D000069 ORTHO05D000060 2.4e-10 68.9 99 38.4
HanXRQChr02g0035331 Helianthus annuus HOM05D000069 ORTHO05D000060 2.1e-09 65.9 107 43.0
Lj1g0003547 Lotus japonicus HOM05D000069 ORTHO05D000060 2.1e-09 65.9 104 41.3
Phvul.003G207200 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 2.1e-09 65.9 104 39.4
VMungo1215G1919 Vigna mungo HOM05D000069 ORTHO05D000060 2.1e-09 65.9 102 39.2
HanXRQChr02g0035311 Helianthus annuus HOM05D000069 ORTHO05D000060 2.7e-09 65.5 114 40.4
Lj9A472T86 Lonicera japonica HOM05D000069 ORTHO05D000060 4.6e-09 64.7 102 36.3
Glyma.04G190700 Glycine max HOM05D000069 ORTHO05D000060 6.0e-09 64.3 104 39.4
Eucgr.K02769 Eucalyptus grandis HOM05D000069 ORTHO05D000060 1.0e-08 63.5 100 39.0
CiPaw.11G013900 Carya illinoinensis HOM05D000069 ORTHO05D000060 1.3e-08 63.2 104 39.4
Ca_16108_v3 Cicer arietinum L. HOM05D000069 ORTHO05D000060 1.3e-08 63.2 104 39.4
arahy.Tifrunner.gnm1.ann1.CA7N65 Arachis hypogaea HOM05D000069 ORTHO05D000060 1.7e-08 62.8 107 36.4
arahy.Tifrunner.gnm1.ann1.EH6AZ8 Arachis hypogaea HOM05D000069 ORTHO05D000060 1.7e-08 62.8 107 36.4
HanXRQChr02g0035341 Helianthus annuus HOM05D000069 ORTHO05D000060 1.7e-08 62.8 108 39.8
Lalb_Chr08g0236901 Lupinus albus HOM05D000069 ORTHO05D000060 1.7e-08 62.8 103 40.8
Medtr4g104370 Medicago truncatula HOM05D000069 ORTHO05D000060 1.7e-08 62.8 102 37.3
Phvul.009G170800 Phaseolus vulgaris HOM05D000069 ORTHO05D000060 1.7e-08 62.8 103 38.8
TPR.G22911 Trifolium pratense HOM05D000069 ORTHO05D000060 2.3e-08 62.4 96 40.6
MBI10_g16719_MAGBIO Magnolia biondii HOM05D000069 ORTHO05D000060 3.0e-08 62.0 100 41.0
Lj4g0006748 Lotus japonicus HOM05D000069 ORTHO05D000060 3.9e-08 61.6 94 38.3
MD13G1105500 Malus domestica HOM05D000069 ORTHO05D000060 3.9e-08 61.6 101 37.6
Nitab4.5_0010931g0010 Nicotiana tabacum HOM05D000069 ORTHO05D000060 3.9e-08 61.6 100 41.0
PSO017G5644 Papaver somniferum HOM05D000069 ORTHO05D000060 3.9e-08 61.6 100 39.0
PSO478G0911 Papaver somniferum HOM05D000069 ORTHO05D000060 3.9e-08 61.6 100 39.0
QL10p005827 Quercus lobata HOM05D000069 ORTHO05D000060 3.9e-08 61.6 102 37.3
CANSAT01G1813 Cannabis sativa HOM05D000069 ORTHO05D000060 5.1e-08 61.2 101 36.6
Glyma.17G126300 Glycine max HOM05D000069 ORTHO05D000060 5.1e-08 61.2 94 37.2
Lalb_Chr11g0069941 Lupinus albus HOM05D000069 ORTHO05D000060 5.1e-08 61.2 96 39.6
Potri.015G087500 Populus trichocarpa HOM05D000069 ORTHO05D000060 5.1e-08 61.2 108 38.0
Gohir.A03G063600 Gossypium hirsutum HOM05D000069 ORTHO05D000060 6.6e-08 60.8 100 41.0
Gohir.D03G102700 Gossypium hirsutum HOM05D000069 ORTHO05D000060 6.6e-08 60.8 100 41.0
Gorai.003G108200 Gossypium raimondii HOM05D000069 ORTHO05D000060 6.6e-08 60.8 100 41.0
Lalb_Chr12g0202011 Lupinus albus HOM05D000069 ORTHO05D000060 6.6e-08 60.8 104 36.5
Manes.14G056700 Manihot esculenta HOM05D000069 ORTHO05D000060 6.6e-08 60.8 98 38.8
Aa31LG4G16950 Aethionema arabicum HOM05D000069 ORTHO05D000060 8.6e-08 60.5 101 37.6
Carub.0005s1452 Capsella rubella HOM05D000069 ORTHO05D000060 8.6e-08 60.5 101 38.6
ECA232G4757 Erigeron canadensis HOM05D000069 ORTHO05D000060 8.6e-08 60.5 102 39.2
Glyma.06G174800 Glycine max HOM05D000069 ORTHO05D000060 8.6e-08 60.5 104 37.5
MD14G1166600 Malus domestica HOM05D000069 ORTHO05D000060 8.6e-08 60.5 103 35.9
PSO170G6438 Papaver somniferum HOM05D000069 ORTHO05D000060 8.6e-08 60.5 101 38.6
Sabra12G0065700 Salix brachista HOM05D000069 ORTHO05D000060 8.6e-08 60.5 102 38.2
Sabra15G0110800 Salix brachista HOM05D000069 ORTHO05D000060 8.6e-08 60.5 101 38.6
Thecc.03G119300 Theobroma cacao HOM05D000069 ORTHO05D000060 8.6e-08 60.5 100 40.0
Aqoxy5G03640 Aquilegia oxysepala HOM05D000069 ORTHO05D000060 1.1e-07 60.1 100 38.0
BcaB01g00823 Brassica carinata HOM05D000069 ORTHO05D000060 1.1e-07 60.1 101 38.6
Haze_14177 Corylus avellana HOM05D000072 ORTHO05D000026 1.1e-07 60.1 102 35.3
Duzib205G1773 Durio zibethinus HOM05D000069 ORTHO05D000060 1.1e-07 60.1 100 41.0
Manes.12G019800 Manihot esculenta HOM05D000069 ORTHO05D000060 1.1e-07 60.1 92 39.1
Potri.015G087400 Populus trichocarpa HOM05D000069 ORTHO05D000060 1.1e-07 60.1 102 37.3
Prupe.1G240900 Prunus persica HOM05D000069 ORTHO05D000060 1.1e-07 60.1 103 35.0
Sabra15G0110700 Salix brachista HOM05D000069 ORTHO05D000060 1.1e-07 60.1 102 38.2
SalBow5G3229 Salvia bowleyana HOM05D000069 ORTHO05D000060 1.1e-07 60.1 102 39.2
SalBow5G4191 Salvia bowleyana HOM05D000069 ORTHO05D000060 1.1e-07 60.1 102 39.2
BraA06t25015Z Brassica rapa HOM05D000069 ORTHO05D000060 1.5e-07 59.7 101 37.6
DCAR_026197 Daucus carota HOM05D000069 ORTHO05D000060 1.5e-07 59.7 107 34.6
Peaxi162Scf00089g01022 Petunia axillaris HOM05D000069 ORTHO05D000060 1.5e-07 59.7 99 38.4
Hund18515 Selenicereus undatus HOM05D000069 ORTHO05D000060 1.5e-07 59.7 104 42.3
Hund18563 Selenicereus undatus HOM05D000069 ORTHO05D000060 1.5e-07 59.7 104 42.3
TWI23G1314 Tripterygium wilfordii HOM05D000069 ORTHO05D000060 1.5e-07 59.7 103 36.9
BcaC07g39317 Brassica carinata HOM05D000069 ORTHO05D000060 1.9e-07 59.3 101 37.6
C08p23330 Brassica napus HOM05D000069 ORTHO05D000060 1.9e-07 59.3 101 37.6
BolC8t49963H Brassica oleracea HOM05D000069 ORTHO05D000060 1.9e-07 59.3 101 37.6
RcHm_v2.0_Chr7g0191791 Rosa chinensis HOM05D000069 ORTHO05D000060 1.9e-07 59.3 99 38.4
A06p19330 Brassica napus HOM05D000069 ORTHO05D000060 2.5e-07 58.9 99 37.4
QL03p056236 Quercus lobata HOM05D000069 ORTHO05D000060 2.5e-07 58.9 94 38.3
AL8G24300 Arabidopsis lyrata HOM05D000069 ORTHO05D000060 3.3e-07 58.5 97 38.1
AT5G50260 Arabidopsis thaliana HOM05D000069 ORTHO05D000060 3.3e-07 58.5 102 37.3
Gohir.A12G187000 Gossypium hirsutum HOM05D000069 ORTHO05D000060 3.3e-07 58.5 103 37.9
SHI17335 Sapria himalayana HOM05D000069 ORTHO05D000060 3.3e-07 58.5 102 36.3
VMungo1309G1991 Vigna mungo HOM05D000069 ORTHO05D000060 3.3e-07 58.5 104 36.5
Atru.chr9.968 Acer truncatum HOM05D000069 ORTHO05D000060 4.3e-07 58.2 104 35.6
COL.COLO4_04954 Corchorus olitorius HOM05D000069 ORTHO05D000060 4.3e-07 58.2 100 39.0
MD06G1161000 Malus domestica HOM05D000069 ORTHO05D000060 4.3e-07 58.2 99 35.4
Nitab4.5_0000025g0200 Nicotiana tabacum HOM05D000069 ORTHO05D000060 4.3e-07 58.2 100 39.0
Nitab4.5_0001812g0100 Nicotiana tabacum HOM05D000069 ORTHO05D000060 4.3e-07 58.2 100 39.0
PSO407G0373 Papaver somniferum HOM05D000069 ORTHO05D000060 4.3e-07 58.2 100 37.0
AT3G48350 Arabidopsis thaliana HOM05D000069 ORTHO05D000060 5.6e-07 57.8 101 37.6
Dinv38495 Davidia involucrata HOM05D000069 ORTHO05D000060 5.6e-07 57.8 98 37.8
HanXRQChr09g0272501 Helianthus annuus HOM05D000069 ORTHO05D000060 5.6e-07 57.8 102 36.3
TWI39G0825 Tripterygium wilfordii HOM05D000069 ORTHO05D000060 5.6e-07 57.8 102 36.3
AL5G27760 Arabidopsis lyrata HOM05D000069 ORTHO05D000060 7.3e-07 57.4 101 36.6
Manes.13G020100 Manihot esculenta HOM05D000069 ORTHO05D000060 7.3e-07 57.4 96 36.5
Nitab4.5_0000510g0040 Nicotiana tabacum HOM05D000069 ORTHO05D000060 7.3e-07 57.4 100 40.0
Prupe.5G160900 Prunus persica HOM05D000069 ORTHO05D000060 7.3e-07 57.4 100 38.0
Rhsim12G0170500 Rhododendron simsii HOM05D000069 ORTHO05D000060 7.3e-07 57.4 100 40.0
Thecc.02G266600 Theobroma cacao HOM05D000069 ORTHO05D000060 7.3e-07 57.4 101 39.6
CAN.G472.56 Capsicum annuum HOM05D000069 ORTHO05D000060 9.5e-07 57.0 99 38.4
Dinv11034 Davidia involucrata HOM05D000069 ORTHO05D000060 9.5e-07 57.0 104 37.5
Lj5A101G110 Lonicera japonica HOM05D000069 ORTHO05D000060 9.5e-07 57.0 104 35.6
AUR62022079 Chenopodium quinoa HOM05D000069 ORTHO05D000060 1.2e-06 56.6 102 42.2
Haze_12288 Corylus avellana HOM05D000069 ORTHO05D000060 1.2e-06 56.6 108 37.0
Medtr3g075390 Medicago truncatula HOM05D000069 ORTHO05D000060 1.2e-06 56.6 94 36.2
vmacro19264 Vaccinium macrocarpon HOM05D000069 ORTHO05D000060 1.2e-06 56.6 100 37.0
Carub.0008s1031 Capsella rubella HOM05D000069 ORTHO05D000060 1.6e-06 56.2 99 37.4
Cc04_g10790 Coffea canephora HOM05D000069 ORTHO05D000060 1.6e-06 56.2 100 42.0
Thhalv10010474m.g Eutrema salsugineum HOM05D000069 ORTHO05D000060 1.6e-06 56.2 103 35.9
Lsat_1_v5_gn_3_29981 Lactuca sativa HOM05D000069 ORTHO05D000060 1.6e-06 56.2 104 38.5
PGR044G1049 Punica granatum HOM05D000069 ORTHO05D000060 1.6e-06 56.2 98 36.7
MSTRG.23183 Avicennia marina HOM05D000069 ORTHO05D000060 2.1e-06 55.8 97 38.1
CANSAT80G2103 Cannabis sativa HOM05D000069 ORTHO05D000060 2.1e-06 55.8 98 36.7
CARHR157120 Cardamine hirsuta HOM05D000069 ORTHO05D000060 2.1e-06 55.8 104 36.5
Gohir.D12G190000 Gossypium hirsutum HOM05D000069 ORTHO05D000060 2.1e-06 55.8 103 36.9
HanXRQChr02g0035291 Helianthus annuus HOM05D000069 ORTHO05D000060 2.1e-06 55.8 102 40.2
Lsat_1_v5_gn_4_78480 Lactuca sativa HOM05D000069 ORTHO05D000060 2.1e-06 55.8 102 37.3
Peaxi162Scf00536g00006 Petunia axillaris HOM05D000069 ORTHO05D000060 2.1e-06 55.8 94 37.2
TAR374G0176 Trochodendron aralioides HOM05D000069 ORTHO05D000060 2.1e-06 55.8 100 39.0
AL5G27750 Arabidopsis lyrata HOM05D000069 ORTHO05D000060 2.8e-06 55.5 103 35.0
EL10Ac7g18035 Beta vulgaris HOM05D000069 ORTHO05D000060 2.8e-06 55.5 104 38.5
Ca_19434_v3 Cicer arietinum L. HOM05D000069 ORTHO05D000060 2.8e-06 55.5 102 34.3
HanXRQChr02g0035301 Helianthus annuus HOM05D000069 ORTHO05D000060 2.8e-06 55.5 102 36.3
Lsat_1_v5_gn_1_28720 Lactuca sativa HOM05D000069 ORTHO05D000060 2.8e-06 55.5 108 36.1
Oeu063276.1 Olea europaea HOM05D000069 ORTHO05D000060 2.8e-06 55.5 99 37.4
Solyc03g111730.3 Solanum lycopersicum HOM05D000069 ORTHO05D000060 2.8e-06 55.5 100 39.0
Sopen03g030850 Solanum pennellii HOM05D000069 ORTHO05D000060 2.8e-06 55.5 100 39.0
PGSC0003DMG400015160 Solanum tuberosum HOM05D000069 ORTHO05D000060 2.8e-06 55.5 100 39.0
THA.LOC104798962 Tarenaya hassleriana HOM05D000069 ORTHO05D000060 2.8e-06 55.5 103 35.9
Ah.02g130350 Amaranthus hybridus HOM05D000069 ORTHO05D000060 3.6e-06 55.1 100 36.0
Duzib084G0556 Durio zibethinus HOM05D000069 ORTHO05D000060 3.6e-06 55.1 98 38.8
FAN08G2770 Fragaria x ananassa HOM05D000069 ORTHO05D000060 3.6e-06 55.1 100 36.0
Lj4g0008998 Lotus japonicus HOM05D000069 ORTHO05D000060 3.6e-06 55.1 104 34.6
Rhsim08G0182100 Rhododendron simsii HOM05D000069 ORTHO05D000060 3.6e-06 55.1 100 37.0
GSVIVG01000582001 Vitis vinifera HOM05D000069 ORTHO05D000060 3.6e-06 55.1 104 36.5
CARHR258350 Cardamine hirsuta HOM05D000069 ORTHO05D000060 4.7e-06 54.7 102 35.3
Lsat_1_v5_gn_4_78460 Lactuca sativa HOM05D000069 ORTHO05D000060 4.7e-06 54.7 102 36.3
Manes.06G113000 Manihot esculenta HOM05D000069 ORTHO05D000060 4.7e-06 54.7 104 34.6
Oeu053490.1 Olea europaea HOM05D000069 ORTHO05D000060 4.7e-06 54.7 96 37.5
TPR.G37568 Trifolium pratense HOM05D000069 ORTHO05D000060 4.7e-06 54.7 115 31.3
arahy.Tifrunner.gnm1.ann1.WB0D1L Arachis hypogaea HOM05D000069 ORTHO05D000060 6.2e-06 54.3 104 34.6
Ciclev10020781m.g Citrus clementina HOM05D000069 ORTHO05D000060 6.2e-06 54.3 104 36.5
Nn4g22521 Nelumbo nucifera HOM05D000069 ORTHO05D000060 6.2e-06 54.3 103 35.9
arahy.Tifrunner.gnm1.ann1.JS3M3F Arachis hypogaea HOM05D000069 ORTHO05D000060 8.1e-06 53.9 104 34.6
COL.COLO4_23525 Corchorus olitorius HOM05D000069 ORTHO05D000060 8.1e-06 53.9 93 38.7
Thhalv10013914m.g Eutrema salsugineum HOM05D000069 ORTHO05D000060 8.1e-06 53.9 97 36.1


User provided reference genes

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