Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0100301 Helianthus annuus HOM05D005518 ORTHO05D001269 0.0e+00 1162.5 660 100.0
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 6.2e-195 684.9 616 68.0
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 2.0e-177 626.7 672 58.2
Lsat_1_v5_gn_1_29580 Lactuca sativa HOM05D005518 ORTHO05D001269 2.8e-155 553.1 689 54.7
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 2.1e-110 404.1 699 42.8
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 2.4e-106 390.6 687 42.4
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 1.6e-102 377.9 705 41.3
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 4.9e-99 366.3 698 42.0
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 2.4e-98 364.0 696 41.4
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 9.9e-92 342.0 708 39.8
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 1.3e-91 341.7 695 40.9
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 7.1e-90 335.9 703 39.8
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 2.1e-89 334.3 702 40.2
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 4.6e-89 333.2 701 39.9
vmacro16655 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 6.0e-89 332.8 694 41.9
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 2.3e-88 330.9 704 39.6
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 3.9e-88 330.1 698 38.0
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 5.1e-88 329.7 703 39.0
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.9e-87 327.8 707 39.9
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 2.5e-87 327.4 705 39.7
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.4e-85 321.6 704 38.4
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 1.4e-85 321.6 643 40.7
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 2.9e-83 313.9 696 40.7
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 4.9e-83 313.2 713 38.0
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 8.4e-83 312.4 705 38.7
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 1.1e-82 312.0 704 38.9
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 1.1e-82 312.0 696 38.6
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.9e-82 311.2 708 38.8
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.4e-82 309.7 699 39.2
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 1.6e-81 308.1 690 37.7
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.1e-81 307.8 691 38.4
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 3.5e-81 307.0 693 38.1
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 4.6e-81 306.6 697 37.6
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 2.3e-80 304.3 703 38.3
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 3.0e-80 303.9 695 36.7
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 3.9e-80 303.5 699 37.3
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 8.7e-80 302.4 696 37.2
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 5.6e-79 299.7 717 38.1
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 7.4e-79 299.3 699 38.6
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.6e-78 298.1 694 38.0
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 3.7e-78 297.0 709 38.1
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 1.1e-77 295.4 705 38.7
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 2.4e-77 294.3 705 38.6
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 3.1e-77 293.9 701 37.4
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 2.6e-76 290.8 699 37.2
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 5.5e-74 283.1 701 39.2
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 3.5e-73 280.4 699 37.9
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 4.6e-73 280.0 623 39.0
Nitab4.5_0005327g0060 Nicotiana tabacum HOM05D005518 ORTHO05D001269 4.6e-73 280.0 688 37.9
ClCG03G003580 Citrullus lanatus HOM05D005518 ORTHO05D001269 2.3e-72 277.7 734 34.9
Lj9A476T55 Lonicera japonica HOM05D005518 ORTHO05D001269 5.1e-72 276.6 660 38.9
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 3.3e-71 273.9 713 37.2
CsaV3_1G009430 Cucumis sativus L. HOM05D005518 ORTHO05D001269 5.6e-71 273.1 704 36.6
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 9.6e-71 272.3 698 36.4
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 2.8e-70 270.8 624 39.1
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 6.2e-70 269.6 774 34.5
Sed0017473 Sechium edule HOM05D005518 ORTHO05D001269 6.2e-70 269.6 706 36.7
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 8.2e-70 269.2 665 37.3
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 1.8e-69 268.1 634 38.5
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 2.4e-69 267.7 640 39.7
Sed0015656 Sechium edule HOM05D005518 ORTHO05D001269 2.4e-69 267.7 704 36.2
MSTRG.9316 Avicennia marina HOM05D005518 ORTHO05D001269 4.0e-69 266.9 630 36.0
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 9.0e-69 265.8 708 35.7
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 2.0e-68 264.6 694 37.0
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 5.8e-68 263.1 701 35.7
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.3e-67 261.9 701 35.4
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 1.7e-67 261.5 697 35.7
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 4.9e-67 260.0 702 35.3
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 6.5e-67 259.6 618 37.9
Nitab4.5_0001664g0120 Nicotiana tabacum HOM05D005518 ORTHO05D001269 1.4e-66 258.5 689 38.8
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 9.3e-66 255.8 696 34.9
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 5.1e-64 250.0 693 35.4
FAN18G1514 Fragaria x ananassa HOM05D000557 ORTHO05D001269 8.7e-64 249.2 641 37.4
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 2.5e-63 247.7 692 34.7
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 2.4e-61 241.1 700 34.6
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 3.1e-61 240.7 693 34.5
MELO3C002344.2 Cucumis melo HOM05D005518 ORTHO05D001269 4.1e-61 240.4 704 35.4
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 4.5e-60 236.9 703 34.0
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 7.7e-60 236.1 687 33.5
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 1.3e-59 235.3 684 34.4
Manes.14G054500 Manihot esculenta HOM05D005518 ORTHO05D001269 5.0e-59 233.4 697 34.4
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 6.5e-59 233.0 734 34.5
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 9.4e-58 229.2 714 33.2
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 2.1e-57 228.0 418 38.8
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 6.7e-56 223.0 703 34.6
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 2.8e-54 217.6 348 43.1
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 2.8e-54 217.6 700 33.4
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 4.5e-52 210.3 697 31.7
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 6.5e-51 206.5 682 32.7
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 3.2e-50 204.1 698 33.0
SalBow1G4741 Salvia bowleyana HOM05D005518 ORTHO05D001269 5.5e-50 203.4 632 34.2
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 9.4e-50 202.6 709 33.1
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 9.4e-50 202.6 650 34.8
Sc04g0000850 Simmondsia chinensis HOM05D005518 ORTHO05D001269 1.0e-48 199.1 691 32.1
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 1.4e-48 198.7 638 32.3
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 5.1e-48 196.8 659 32.9
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 2.0e-47 194.9 692 31.4
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 2.0e-47 194.9 692 32.5
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 2.0e-47 194.9 489 35.2
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 2.0e-47 194.9 643 30.6
HanXRQChr05g0135831 Helianthus annuus HOM05D005518 ORTHO05D001269 9.7e-47 192.6 113 92.9
MD06G1148700 Malus domestica HOM05D005518 ORTHO05D001269 1.4e-45 188.7 688 31.2
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 3.1e-45 187.6 748 30.9
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 2.6e-44 184.5 695 31.7
vmacro16713 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 1.3e-43 182.2 248 48.0
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 1.7e-43 181.8 647 34.0
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 1.7e-43 181.8 644 32.3
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.2e-43 181.4 640 33.6
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 2.9e-43 181.0 716 30.7
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 6.5e-43 179.9 710 31.5
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 1.4e-42 178.7 632 32.3
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 1.9e-42 178.3 459 36.2
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 1.4e-40 172.2 717 33.1
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 2.0e-39 168.3 675 31.0
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 2.0e-39 168.3 250 44.8
MD14G1162500 Malus domestica HOM05D005518 ORTHO05D001269 2.0e-39 168.3 454 36.1
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 9.7e-39 166.0 627 34.1
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 1.7e-38 165.2 627 34.0
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 3.7e-38 164.1 626 33.4
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 6.3e-38 163.3 626 34.5
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 1.2e-36 159.1 721 30.4
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 2.6e-36 157.9 690 29.0
Actinidia25603 Actinidia chinensis HOM05D005518 ORTHO05D001269 3.7e-30 137.5 587 30.2
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 1.1e-29 136.0 624 31.2
vmacro16712 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 4.1e-29 134.0 316 41.1
Sc22g0004150 Simmondsia chinensis HOM05D005518 ORTHO05D001269 1.5e-26 125.6 313 33.2
Duzib068G1391 Durio zibethinus HOM05D005518 ORTHO05D001269 5.5e-26 123.6 333 35.1
MD14G1162600 Malus domestica HOM05D005518 ORTHO05D001269 4.4e-23 114.0 186 40.9
Ca_25438_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 7.0e-21 106.7 197 36.5
Actinidia08857 Actinidia chinensis HOM05D005518 ORTHO05D001269 2.9e-19 101.3 345 33.3
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 5.0e-19 100.5 262 33.2
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 6.6e-19 100.1 531 28.2
Ca_16087_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 1.8e-16 92.0 232 38.4
unitig_22.g5764 Utricularia gibba HOM05D005518 ORTHO05D001269 1.8e-16 92.0 692 25.4
HPP92_027039 Vanilla planifolia HOM05D005518 ORTHO05D001269 8.9e-16 89.7 384 30.2
arahy.Tifrunner.gnm1.ann1.QJ9WGP Arachis hypogaea HOM05D001134 ORTHO05D001035 1.7e-14 85.5 115 49.6
Sc22g0004140 Simmondsia chinensis HOM05D005518 ORTHO05D001269 1.2e-12 79.3 124 42.7
Solyc01g096890.4 Solanum lycopersicum HOM05D007286 ORTHO05D008955 2.3e-11 75.1 416 25.7
Manes.10G063001 Manihot esculenta HOM05D000188 ORTHO05D000362 2.9e-11 74.7 369 29.3
TPR.G36317 Trifolium pratense HOM05D007286 ORTHO05D008955 2.9e-11 74.7 209 35.4
Dinv20486 Davidia involucrata HOM05D007286 ORTHO05D008955 1.5e-10 72.4 209 32.5
Sopen01g040600 Solanum pennellii HOM05D007286 ORTHO05D008955 1.5e-10 72.4 417 26.4
CAN.G134.51 Capsicum annuum HOM05D007286 ORTHO05D008955 4.3e-10 70.9 415 27.2
Rhsim07G0072400 Rhododendron simsii HOM05D007286 ORTHO05D008955 4.3e-10 70.9 174 34.5
Peaxi162Scf00647g00320 Petunia axillaris HOM05D007286 ORTHO05D008955 5.6e-10 70.5 423 26.0
Psat4g141960 Pisum sativum HOM05D007286 ORTHO05D008955 1.2e-09 69.3 325 28.9
Lsat_1_v5_gn_5_41960 Lactuca sativa HOM05D007286 ORTHO05D008955 1.6e-09 68.9 498 24.9
Sabra08G0007300 Salix brachista HOM05D007286 ORTHO05D008955 2.1e-09 68.6 339 26.5
Atru.chr12.1143 Acer truncatum HOM05D007286 ORTHO05D008955 2.8e-09 68.2 319 28.2
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 4.7e-09 67.4 201 33.3
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 4.7e-09 67.4 369 27.6
AagrBONN_evm.TU.Sc2ySwM_117.3581 Anthoceros agrestis HOM05D024742 ORTHO05D008955 8.0e-09 66.6 270 26.7
CSS0007228 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.0e-08 66.2 427 24.6
CSS0046865 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D008955 1.0e-08 66.2 427 24.6
Medtr8g044120 Medicago truncatula HOM05D007286 ORTHO05D008955 1.8e-08 65.5 347 29.7
Cfa018874 Carpinus fangiana HOM05D005518 ORTHO05D001269 2.3e-08 65.1 96 50.0
TWI38G1128 Tripterygium wilfordii HOM05D007286 ORTHO05D008955 4.0e-08 64.3 480 25.6
PGSC0003DMG401027501 Solanum tuberosum HOM05D007286 ORTHO05D008955 5.2e-08 63.9 517 26.7
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 8.9e-08 63.2 351 27.6
Cfa010442 Carpinus fangiana HOM05D007286 ORTHO05D008955 8.9e-08 63.2 358 28.5
Aqoxy1G00088 Aquilegia oxysepala HOM05D007286 ORTHO05D008955 1.2e-07 62.8 333 28.2
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 1.2e-07 62.8 327 27.2
Potri.008G012000 Populus trichocarpa HOM05D007286 ORTHO05D008955 1.5e-07 62.4 175 32.0
arahy.Tifrunner.gnm1.ann1.5NH7JH Arachis hypogaea HOM05D007286 ORTHO05D008955 3.4e-07 61.2 472 25.8
Lj3g0009162 Lotus japonicus HOM05D007286 ORTHO05D008955 3.4e-07 61.2 510 25.9
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 4.4e-07 60.8 618 24.1
Hma1.2p1_0233F.1_g097980 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 5.8e-07 60.5 371 25.9
HanXRQChr07g0192711 Helianthus annuus HOM05D007286 ORTHO05D008955 7.5e-07 60.1 460 25.9
Ca_12172_v3 Cicer arietinum L. HOM05D007286 ORTHO05D008955 1.3e-06 59.3 405 26.2
Actinidia12136 Actinidia chinensis HOM05D007286 ORTHO05D008955 1.7e-06 58.9 349 27.5
Phvul.011G187500 Phaseolus vulgaris HOM05D007286 ORTHO05D008955 2.2e-06 58.5 368 28.0
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 3.7e-06 57.8 455 26.6
COL.COLO4_28923 Corchorus olitorius HOM05D007286 ORTHO05D008955 4.9e-06 57.4 369 27.1
Glyma.08G227900 Glycine max HOM05D007286 ORTHO05D008955 4.9e-06 57.4 369 28.2
Lsat_1_v5_gn_2_81680 Lactuca sativa HOM05D005518 ORTHO05D001269 4.9e-06 57.4 56 55.4
FvH4_7g04960 Fragaria vesca HOM05D007286 ORTHO05D008955 6.4e-06 57.0 385 24.9
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 6.4e-06 57.0 424 27.1
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 8.3e-06 56.6 392 26.3


User provided reference genes

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