Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 2.0e-172 609.0 309 100.0
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 4.4e-127 458.4 290 83.8
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.7e-126 456.4 323 77.1
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 4.3e-114 415.2 290 75.2
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 3.6e-113 412.1 290 74.8
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.5e-106 390.2 294 69.0
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 3.7e-105 385.6 290 69.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 8.1e-105 384.4 290 70.0
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 4.0e-104 382.1 290 67.6
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 5.3e-104 381.7 290 69.3
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 6.9e-104 381.3 290 67.9
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 6.9e-104 381.3 294 67.0
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 6.9e-104 381.3 290 67.6
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.5e-103 380.2 294 67.0
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.5e-103 380.2 290 67.6
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 2.0e-103 379.8 290 67.6
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 4.5e-103 378.6 290 66.9
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.5e-103 378.6 290 66.9
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 5.8e-103 378.3 290 67.6
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 7.6e-103 377.9 291 68.0
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 1.0e-102 377.5 290 67.2
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.7e-102 376.7 290 67.6
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 1.7e-102 376.7 290 67.6
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 2.2e-102 376.3 289 67.1
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 3.8e-102 375.6 290 67.6
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 4.9e-102 375.2 290 65.5
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 4.9e-102 375.2 290 67.6
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 4.9e-102 375.2 290 66.6
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 4.9e-102 375.2 290 66.9
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 4.9e-102 375.2 290 65.9
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 4.9e-102 375.2 290 65.9
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 6.5e-102 374.8 290 65.5
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 6.5e-102 374.8 290 67.6
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 8.4e-102 374.4 290 65.9
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 8.4e-102 374.4 290 67.9
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.1e-101 374.0 290 66.2
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.1e-101 374.0 290 66.9
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 1.9e-101 373.2 290 66.2
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 1.9e-101 373.2 290 66.6
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.9e-101 373.2 290 67.6
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 2.5e-101 372.9 290 67.2
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 3.2e-101 372.5 290 67.2
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 4.2e-101 372.1 290 66.9
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 4.2e-101 372.1 291 65.3
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 7.1e-101 371.3 290 67.2
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 7.1e-101 371.3 290 66.2
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.2e-100 370.5 290 65.5
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 1.6e-100 370.2 290 65.2
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 2.1e-100 369.8 290 66.2
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 2.1e-100 369.8 290 65.5
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 2.1e-100 369.8 290 65.5
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 3.5e-100 369.0 332 60.2
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 1.0e-99 367.5 288 65.3
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 1.3e-99 367.1 290 66.2
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.3e-99 367.1 290 65.2
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 1.8e-99 366.7 290 64.8
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 5.1e-99 365.2 290 64.8
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 8.7e-99 364.4 290 63.8
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 8.7e-99 364.4 290 65.2
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 1.1e-98 364.0 292 66.8
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.1e-98 364.0 290 64.8
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.9e-98 363.2 290 65.9
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 1.9e-98 363.2 290 64.8
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 2.5e-98 362.8 290 64.5
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 3.3e-98 362.5 290 65.5
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 3.3e-98 362.5 291 66.0
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 4.3e-98 362.1 290 65.5
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 5.7e-98 361.7 290 65.5
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 7.4e-98 361.3 290 65.5
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 9.6e-98 360.9 290 64.1
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 1.3e-97 360.5 290 63.4
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 3.7e-97 359.0 290 64.1
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 4.8e-97 358.6 290 65.2
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 6.2e-97 358.2 287 65.5
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 6.2e-97 358.2 287 65.5
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 6.2e-97 358.2 287 65.5
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.4e-96 357.1 290 64.1
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 1.8e-96 356.7 290 64.8
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 2.0e-95 353.2 290 65.2
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 5.8e-95 351.7 290 62.1
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 1.3e-94 350.5 290 61.4
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 1.1e-93 347.4 327 57.8
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 2.5e-93 346.3 290 61.7
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 2.7e-92 342.8 270 66.3
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.3e-91 339.7 270 66.3
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 5.1e-91 338.6 290 60.7
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 8.7e-91 337.8 290 63.4
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 2.4e-88 329.7 290 58.6
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 6.9e-88 328.2 290 58.6
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 9.0e-88 327.8 272 65.8
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 1.7e-86 323.6 289 59.2
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 2.0e-82 310.1 289 59.2
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 4.5e-79 298.9 310 55.2
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 3.9e-75 285.8 243 63.0
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 9.7e-74 281.2 290 51.4
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.1e-72 277.7 290 49.7
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 5.9e-71 271.9 197 69.0
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 1.3e-70 270.8 290 49.7
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 1.5e-69 267.3 195 70.3
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 4.7e-68 262.3 281 56.2
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 8.8e-67 258.1 290 47.2
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.1e-66 257.7 195 68.2
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 2.0e-58 230.3 197 61.9
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 1.3e-54 217.6 283 47.3
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.6e-50 203.4 156 69.9
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.8e-48 197.2 150 68.7
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.1e-40 171.4 143 60.8
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 2.4e-40 170.2 290 35.5
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 2.4e-40 170.2 290 35.5
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 4.1e-40 169.5 130 70.0
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 5.9e-39 165.6 138 60.1
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 1.3e-38 164.5 309 36.2
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 3.9e-38 162.9 294 36.4
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.4e-32 143.7 113 65.5
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 2.4e-32 143.7 72 97.2
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 3.4e-26 123.2 113 58.4
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 7.3e-21 105.5 73 68.5
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 5.2e-19 99.4 126 43.7
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 1.7e-17 94.4 324 27.8
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 1.4e-16 91.3 47 93.6
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 2.4e-16 90.5 56 73.2
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.9e-13 80.9 55 70.9
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 2.4e-11 73.9 80 48.8
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 9.9e-10 68.6 79 49.4
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 8.4e-09 65.5 40 80.0
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 9.3e-08 62.0 33 97.0


User provided reference genes

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