Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.8e-215 752.3 382 100.0
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 1.5e-180 636.3 385 85.2
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 4.4e-169 598.2 379 81.0
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 7.3e-156 554.3 385 74.8
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 9.6e-156 553.9 363 76.9
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 2.4e-154 549.3 385 73.5
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 3.1e-154 548.9 376 74.7
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 1.2e-153 547.0 389 73.8
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 5.8e-153 544.7 389 72.8
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 1.7e-152 543.1 380 74.7
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.4e-151 540.0 390 71.0
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 2.4e-151 539.3 388 71.4
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 3.2e-151 538.9 377 71.6
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.2e-151 538.5 362 74.9
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 5.4e-151 538.1 378 72.2
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 9.3e-151 537.3 316 82.6
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 9.3e-151 537.3 267 99.6
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.2e-150 537.0 389 71.2
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.2e-150 537.0 362 74.0
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 1.6e-150 536.6 388 70.9
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.7e-150 535.8 384 70.8
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 4.6e-150 535.0 357 74.8
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 6.0e-150 534.6 384 71.9
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 7.9e-150 534.3 333 78.7
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 1.8e-149 533.1 381 72.4
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 3.0e-149 532.3 379 70.4
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 8.7e-149 530.8 334 78.1
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 8.7e-149 530.8 362 73.5
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 1.1e-148 530.4 363 71.9
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.5e-148 530.0 329 78.1
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.5e-148 530.0 390 72.3
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.9e-148 529.6 367 72.2
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 3.3e-148 528.9 379 71.5
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 5.6e-148 528.1 388 72.4
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.4e-148 527.7 369 72.4
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 7.4e-148 527.7 329 78.7
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.3e-147 526.9 316 79.7
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 1.3e-147 526.9 385 71.2
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 2.1e-147 526.2 369 72.4
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 2.1e-147 526.2 358 73.2
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 2.1e-147 526.2 380 71.6
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 2.8e-147 525.8 385 69.4
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 3.7e-147 525.4 339 76.1
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.8e-147 525.0 386 71.5
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 1.4e-146 523.5 388 69.8
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 1.4e-146 523.5 369 72.1
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 2.4e-146 522.7 386 69.4
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 2.4e-146 522.7 384 70.1
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 3.1e-146 522.3 379 71.2
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 3.1e-146 522.3 394 70.1
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 5.3e-146 521.5 360 71.7
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.5e-145 520.0 367 71.7
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 2.0e-145 519.6 348 75.6
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 4.5e-145 518.5 352 73.0
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 5.8e-145 518.1 381 69.6
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 5.8e-145 518.1 388 69.1
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 7.6e-145 517.7 359 71.3
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.0e-144 517.3 382 69.9
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.3e-144 516.9 348 75.0
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 1.3e-144 516.9 328 77.1
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 1.7e-144 516.5 348 74.4
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 1.7e-144 516.5 368 71.2
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 2.9e-144 515.8 348 75.0
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 4.9e-144 515.0 383 68.9
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 6.5e-144 514.6 354 72.6
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.4e-143 513.5 383 68.9
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 2.5e-143 512.7 342 73.1
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 5.5e-143 511.5 345 74.2
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 5.5e-143 511.5 345 74.2
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 9.3e-143 510.8 345 74.2
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 1.2e-142 510.4 349 73.6
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 3.5e-142 508.8 381 67.5
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 6.0e-142 508.1 348 73.6
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 6.0e-142 508.1 385 67.0
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 2.3e-141 506.1 348 73.3
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 5.7e-140 501.5 364 71.4
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 1.4e-138 496.9 359 71.0
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 3.1e-138 495.7 331 72.5
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 9.0e-138 494.2 376 70.5
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.0e-137 493.0 357 71.4
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 1.0e-136 490.7 384 67.2
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.1e-135 487.3 393 64.9
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 4.3e-132 475.3 381 63.5
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 3.1e-130 469.2 276 81.2
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 1.2e-129 467.2 373 64.6
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 4.2e-127 458.8 290 83.8
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 9.4e-127 457.6 274 79.2
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 6.1e-126 454.9 268 82.5
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.3e-123 447.2 355 68.2
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 2.9e-120 436.0 386 61.9
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 1.3e-115 420.6 259 80.3
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 2.2e-115 419.9 316 63.9
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 5.9e-113 411.8 326 59.5
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 3.8e-112 409.1 328 60.4
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 8.5e-112 407.9 309 69.9
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.2e-110 404.1 268 70.5
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 1.6e-105 387.1 267 72.3
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 1.3e-104 384.0 314 58.6
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 2.3e-101 373.2 272 68.8
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 2.2e-99 366.7 289 68.5
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.2e-94 350.9 293 66.9
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 4.7e-86 322.4 231 70.1
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 5.0e-80 302.4 269 63.2
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 6.6e-72 275.4 311 46.0
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 1.9e-71 273.9 318 42.1
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 1.9e-71 273.9 318 42.1
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 3.3e-71 273.1 267 55.8
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 9.5e-71 271.6 334 44.0
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.9e-66 257.3 150 82.0
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 7.1e-66 255.4 166 73.5
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 7.8e-65 251.9 239 58.6
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 2.9e-59 233.4 130 86.2
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 3.7e-59 233.0 166 72.9
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 7.6e-36 155.6 393 32.6
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 2.2e-35 154.1 79 93.7
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 2.9e-35 153.7 90 81.1
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 3.0e-32 143.7 94 70.2
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.4e-29 134.8 91 72.5
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.5e-28 131.3 75 78.7
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 2.4e-21 107.5 104 52.9
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 2.0e-20 104.4 79 59.5
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 4.6e-17 93.2 77 66.2
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 1.8e-16 91.3 47 93.6
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 7.4e-15 85.9 58 67.2
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 1.8e-13 81.3 60 75.0
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 2.4e-13 80.9 54 72.2
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 9.0e-13 79.0 42 95.2
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 1.2e-12 78.6 112 51.8
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.0e-11 75.5 121 40.5
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.0e-11 75.5 121 40.5
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 5.0e-11 73.2 313 27.2
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 1.9e-10 71.2 292 26.7
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 2.5e-10 70.9 285 27.0
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 4.2e-10 70.1 314 25.8
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 5.5e-10 69.7 95 43.2
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 5.5e-10 69.7 275 25.8
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 7.2e-10 69.3 287 26.8
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 9.4e-10 68.9 290 26.2
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 9.4e-10 68.9 345 27.5
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 1.2e-09 68.6 283 27.2
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 1.6e-09 68.2 295 25.8
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 2.7e-09 67.4 298 26.5
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 3.6e-09 67.0 326 27.0
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 6.1e-09 66.2 351 26.8
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 7.9e-09 65.9 306 26.8
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.0e-08 65.5 75 48.0
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 1.4e-08 65.1 61 57.4
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 1.8e-08 64.7 352 26.4
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.8e-08 64.7 286 26.9
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 3.0e-08 63.9 288 25.3
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 3.0e-08 63.9 321 24.9
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 3.0e-08 63.9 57 63.2
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 3.9e-08 63.5 282 27.0
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 3.9e-08 63.5 282 26.6
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 5.1e-08 63.2 285 26.0
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 6.7e-08 62.8 303 27.1
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 8.8e-08 62.4 319 26.3
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 8.8e-08 62.4 319 25.1
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 8.8e-08 62.4 319 25.1
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 8.8e-08 62.4 321 25.5
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 1.1e-07 62.0 319 25.1
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 4.3e-07 60.1 303 24.4
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 4.3e-07 60.1 333 24.3
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 5.7e-07 59.7 347 26.5
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 5.7e-07 59.7 351 25.4
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 7.4e-07 59.3 111 41.4
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 1.7e-06 58.2 287 25.8
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 3.7e-06 57.0 33 75.8
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 3.7e-06 57.0 296 25.0
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 4.8e-06 56.6 341 26.1
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 6.3e-06 56.2 319 24.8
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 8.2e-06 55.8 85 47.1


User provided reference genes

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