Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-233 812.8 426 100.0
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 3.6e-127 459.1 424 65.3
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 1.1e-83 314.7 556 40.5
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 5.6e-80 302.4 547 39.1
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 3.2e-75 286.6 519 39.3
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 3.6e-71 273.1 540 38.1
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-67 261.2 548 35.6
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 5.1e-65 252.7 528 36.4
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-63 248.1 522 37.2
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 2.8e-63 246.9 545 35.4
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 9.0e-62 241.9 574 33.6
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-60 238.0 554 35.2
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 3.9e-57 226.5 534 33.7
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 1.5e-56 224.6 527 33.2
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 9.6e-56 221.9 529 34.2
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 6.5e-52 209.1 540 31.3
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 3.2e-51 206.8 540 31.1
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 7.9e-50 202.2 545 31.6
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-49 201.4 325 44.0
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 3.9e-49 199.9 551 31.2
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 6.7e-49 199.1 551 30.7
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.9e-48 197.6 517 30.9
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 4.3e-48 196.4 544 31.4
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.7e-48 196.1 543 29.5
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.3e-47 194.9 545 29.0
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 2.4e-46 190.7 543 29.5
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 5.3e-46 189.5 526 31.6
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 5.3e-46 189.5 542 29.5
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 1.7e-44 184.5 469 34.5
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 5.0e-44 183.0 532 29.7
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 8.5e-44 182.2 427 32.6
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 2.5e-43 180.6 566 29.9
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 3.2e-43 180.3 535 29.2
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 5.5e-43 179.5 545 30.6
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 9.4e-43 178.7 540 29.3
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 1.6e-42 177.9 441 32.2
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 1.6e-42 177.9 430 32.6
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 4.6e-42 176.4 543 29.7
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 7.9e-42 175.6 558 29.2
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 7.9e-42 175.6 485 31.5
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 7.9e-42 175.6 553 28.9
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 1.0e-41 175.3 537 30.0
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 1.4e-41 174.9 546 29.7
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.4e-41 174.9 541 29.2
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 1.4e-41 174.9 524 30.0
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 2.3e-41 174.1 540 29.3
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 2.3e-41 174.1 472 31.4
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 6.7e-41 172.6 546 29.9
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 1.1e-40 171.8 549 29.7
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.1e-40 171.8 552 28.3
HanXRQChr13g0407821 Helianthus annuus HOM05D003325 ORTHO05D003852 2.0e-40 171.0 372 35.5
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 2.5e-40 170.6 533 28.3
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 2.5e-40 170.6 471 31.0
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 4.3e-40 169.9 483 30.2
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 4.3e-40 169.9 539 27.8
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 7.4e-40 169.1 479 31.7
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 9.7e-40 168.7 536 27.8
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 9.7e-40 168.7 572 27.8
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 9.7e-40 168.7 552 28.4
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 1.3e-39 168.3 544 29.4
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.3e-39 168.3 484 31.8
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 3.7e-39 166.8 539 28.8
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 4.8e-39 166.4 546 29.9
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 4.8e-39 166.4 522 28.2
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 8.2e-39 165.6 546 28.4
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 8.2e-39 165.6 552 27.2
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 1.4e-38 164.9 552 27.2
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 2.4e-38 164.1 335 34.6
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 2.4e-38 164.1 550 28.0
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 4.1e-38 163.3 480 31.2
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 4.1e-38 163.3 486 29.4
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 5.3e-38 162.9 549 27.9
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 6.9e-38 162.5 444 31.5
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 6.9e-38 162.5 545 27.9
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 6.9e-38 162.5 472 32.4
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 9.1e-38 162.2 549 29.3
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 2.0e-37 161.0 479 30.3
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.6e-37 160.6 477 31.2
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 1.0e-36 158.7 477 31.0
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 1.3e-36 158.3 502 29.3
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 2.2e-36 157.5 553 28.8
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 2.9e-36 157.1 277 38.3
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 2.9e-36 157.1 352 34.9
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 8.5e-36 155.6 487 30.8
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 8.5e-36 155.6 539 28.0
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.1e-35 155.2 546 26.6
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.4e-35 154.8 476 30.9
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.4e-35 154.8 482 30.9
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.4e-35 154.8 276 37.7
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 3.2e-35 153.7 552 28.6
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 5.5e-35 152.9 546 27.3
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 9.4e-35 152.1 538 27.3
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 2.1e-34 151.0 549 29.0
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 2.1e-34 151.0 562 26.3
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.7e-34 150.6 294 35.7
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 4.7e-34 149.8 551 28.3
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 7.9e-34 149.1 535 27.9
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 1.4e-33 148.3 531 27.7
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 1.8e-33 147.9 555 29.4
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 1.5e-32 144.8 249 40.6
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 1.5e-32 144.8 482 29.9
Dinv23165 Davidia involucrata HOM05D003325 ORTHO05D003852 5.7e-32 142.9 362 32.0
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 1.7e-31 141.4 531 27.5
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 2.8e-31 140.6 479 29.9
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 3.7e-31 140.2 508 28.9
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 8.2e-31 139.0 472 30.1
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 8.2e-31 139.0 288 36.5
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.1e-30 138.7 472 30.1
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 1.1e-30 138.7 472 30.1
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 1.4e-30 138.3 468 29.7
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 1.2e-29 135.2 539 26.0
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 1.5e-29 134.8 539 27.3
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 1.3e-28 131.7 530 27.4
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 1.7e-28 131.3 536 24.8
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 2.2e-28 131.0 536 24.6
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.8e-28 130.2 538 25.1
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 8.5e-28 129.0 392 30.1
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 4.2e-27 126.7 543 27.1
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 4.2e-27 126.7 544 25.0
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 9.4e-27 125.6 530 27.9
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 3.6e-26 123.6 453 26.0
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 8.0e-26 122.5 471 26.1
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 3.9e-25 120.2 192 41.1
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 5.2e-25 119.8 465 28.0
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 6.7e-25 119.4 539 27.3
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 2.6e-24 117.5 536 24.3
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 2.2e-23 114.4 275 34.5
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 3.7e-23 113.6 485 26.6
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 2.0e-21 107.8 539 25.4
HanXRQChr02g0034301 Helianthus annuus HOM05D003325 ORTHO05D003852 3.5e-21 107.1 157 43.3
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 7.7e-21 105.9 527 24.5
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 1.0e-20 105.5 335 29.6
HanXRQChr02g0034311 Helianthus annuus HOM05D003325 ORTHO05D003852 8.5e-20 102.4 184 39.1
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 7.2e-19 99.4 458 25.1
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 9.4e-19 99.0 457 25.4
BcaC01g06930 Brassica carinata HOM05D003325 ORTHO05D003852 1.2e-18 98.6 458 25.5
C03p62920 Brassica napus HOM05D003325 ORTHO05D003852 1.6e-18 98.2 458 25.5
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 8.0e-18 95.9 536 23.1
HanXRQChr04g0099661 Helianthus annuus HOM05D003325 ORTHO05D003852 1.4e-17 95.1 95 55.8
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 2.3e-17 94.4 469 26.4
Eucgr.B00098 Eucalyptus grandis HOM05D003325 ORTHO05D003852 3.0e-17 94.0 210 33.8
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 6.8e-17 92.8 460 24.1
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 6.8e-17 92.8 460 24.1
HanXRQChr13g0408761 Helianthus annuus HOM05D003325 ORTHO05D003852 2.0e-16 91.3 129 44.2
Migut.N02169 Erythranthe guttata HOM05D003325 ORTHO05D003852 4.4e-16 90.1 389 25.2
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 4.4e-16 90.1 417 26.9
MD06G1139600 Malus domestica HOM05D003325 ORTHO05D003852 5.7e-16 89.7 159 39.0
HanXRQChr13g0403611 Helianthus annuus HOM05D003325 ORTHO05D003852 3.1e-14 84.0 111 44.1
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 5.9e-13 79.7 269 29.7
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 5.9e-13 79.7 265 31.7
Ah.11g045510 Amaranthus hybridus HOM05D003325 ORTHO05D003852 1.0e-12 79.0 139 37.4
ATR0561G042 Amborella trichopoda HOM05D003325 ORTHO05D003852 6.5e-12 76.3 370 24.3
VMungo1309G1507 Vigna mungo HOM05D003325 ORTHO05D003852 5.5e-11 73.2 126 37.3
HanXRQChr04g0099651 Helianthus annuus HOM05D003325 ORTHO05D003852 7.2e-11 72.8 61 55.7
Lj5A94T49 Lonicera japonica HOM05D003325 ORTHO05D003852 3.6e-10 70.5 118 36.4
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 1.4e-09 68.6 129 34.9
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 3.0e-09 67.4 123 33.3
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.5e-08 65.1 301 27.2
QL03p041488 Quercus lobata HOM05D003325 ORTHO05D003852 3.4e-08 63.9 128 34.4
MD06G1139500 Malus domestica HOM05D003325 ORTHO05D003852 4.4e-08 63.5 59 50.8
QL03p041468 Quercus lobata HOM05D003325 ORTHO05D003852 5.7e-08 63.2 125 32.8
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 7.5e-08 62.8 118 37.3
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 7.5e-08 62.8 123 31.7
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 7.5e-08 62.8 123 31.7
EL10Ac5g11389 Beta vulgaris HOM05D003325 ORTHO05D003852 9.8e-08 62.4 124 33.1
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 1.7e-07 61.6 133 32.3
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 1.7e-07 61.6 126 33.3
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 2.8e-07 60.8 128 33.6
FAN08G2527 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.1e-06 58.9 86 43.0
TPR.G496 Trifolium pratense HOM05D003325 ORTHO05D003852 1.1e-06 58.9 114 36.8
Thhalv10004000m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.8e-06 58.2 50 50.0
MD06G1139800 Malus domestica HOM05D003325 ORTHO05D003852 1.8e-06 58.2 161 31.7
AL3G40400 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 2.4e-06 57.8 62 50.0
Sc10g0010530 Simmondsia chinensis HOM05D003325 ORTHO05D003852 4.1e-06 57.0 121 30.6
Migut.O00357 Erythranthe guttata HOM05D003325 ORTHO05D003852 5.4e-06 56.6 126 33.3
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 9.1e-06 55.8 128 32.0


User provided reference genes

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