Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0098141 Helianthus annuus HOM05D004005 ORTHO05D021354 7.3e-46 186.8 91 100.0
HanXRQChr10g0307841 Helianthus annuus HOM05D004005 ORTHO05D004876 2.4e-20 102.1 61 85.2
Oeu024901.3 Olea europaea HOM05D004005 ORTHO05D004876 7.6e-19 97.1 58 82.8
Sc14g0001030 Simmondsia chinensis HOM05D004005 ORTHO05D004876 1.3e-18 96.3 61 80.3
Cc06_g14320 Coffea canephora HOM05D004005 ORTHO05D004876 1.7e-18 95.9 53 86.8
DCAR_017932 Daucus carota HOM05D004005 ORTHO05D004876 1.7e-18 95.9 61 78.7
Lj9A725G34 Lonicera japonica HOM05D004005 ORTHO05D004876 1.7e-18 95.9 53 86.8
Prupe.1G100000 Prunus persica HOM05D004005 ORTHO05D004876 1.7e-18 95.9 56 80.4
SGA_v2.0_scaffold233G43567 Striga asiatica HOM05D004005 ORTHO05D004876 1.7e-18 95.9 53 84.9
Atru.chr7.422 Acer truncatum HOM05D004005 ORTHO05D004876 2.2e-18 95.5 53 84.9
TAR636G3166 Trochodendron aralioides HOM05D004005 ORTHO05D004876 2.2e-18 95.5 53 84.9
GSVIVG01023713001 Vitis vinifera HOM05D004005 ORTHO05D004876 2.2e-18 95.5 61 77.0
Cc09_g08370 Coffea canephora HOM05D004005 ORTHO05D004876 2.9e-18 95.1 53 83.0
vmacro06047 Vaccinium macrocarpon HOM05D004005 ORTHO05D004876 2.9e-18 95.1 53 84.9
Dinv41324 Davidia involucrata HOM05D004005 ORTHO05D004876 3.8e-18 94.7 53 84.9
Actinidia38657 Actinidia chinensis HOM05D004005 ORTHO05D004876 5.0e-18 94.4 52 86.5
COL.COLO4_10070 Corchorus olitorius HOM05D004005 ORTHO05D004876 5.0e-18 94.4 53 83.0
Nitab4.5_0003269g0020 Nicotiana tabacum HOM05D004005 ORTHO05D004876 5.0e-18 94.4 53 86.8
PSO063G3364 Papaver somniferum HOM05D004005 ORTHO05D004876 5.0e-18 94.4 61 77.0
PSO782G3855 Papaver somniferum HOM05D004005 ORTHO05D004876 5.0e-18 94.4 61 77.0
RcHm_v2.0_Chr4g0405201 Rosa chinensis HOM05D004005 ORTHO05D004876 5.0e-18 94.4 55 80.0
TWI34G0830 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 5.0e-18 94.4 55 80.0
TAR383G0006 Trochodendron aralioides HOM05D004005 ORTHO05D004876 5.0e-18 94.4 52 86.5
CSS0024178 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 6.5e-18 94.0 53 84.9
CSS0035914 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 6.5e-18 94.0 53 84.9
CSS0036046 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 6.5e-18 94.0 53 84.9
Dinv42799 Davidia involucrata HOM05D004005 ORTHO05D004876 6.5e-18 94.0 52 86.5
Dinv43302 Davidia involucrata HOM05D004005 ORTHO05D004876 6.5e-18 94.0 52 86.5
Oeu045108.2 Olea europaea HOM05D004005 ORTHO05D004876 6.5e-18 94.0 53 83.0
TWI63G1233 Tripterygium wilfordii HOM05D004005 ORTHO05D004876 6.5e-18 94.0 52 84.6
Ciclev10008098m.g Citrus clementina HOM05D004005 ORTHO05D004876 8.5e-18 93.6 53 83.0
ECA240G0337 Erigeron canadensis HOM05D004005 ORTHO05D004876 8.5e-18 93.6 53 84.9
Peaxi162Scf00038g00320 Petunia axillaris HOM05D004005 ORTHO05D004876 8.5e-18 93.6 53 84.9
Sed0005377 Sechium edule HOM05D004005 ORTHO05D004876 8.5e-18 93.6 53 83.0
ClCG06G012740 Citrullus lanatus HOM05D004005 ORTHO05D004876 1.1e-17 93.2 53 81.1
MELO3C010189.2 Cucumis melo HOM05D004005 ORTHO05D004876 1.1e-17 93.2 53 81.1
CsaV3_1G029280 Cucumis sativus L. HOM05D004005 ORTHO05D004876 1.1e-17 93.2 53 81.1
FvH4_4g08720 Fragaria vesca HOM05D004005 ORTHO05D004876 1.1e-17 93.2 55 80.0
FAN17G1822 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.1e-17 93.2 55 80.0
FAN22G1768 Fragaria x ananassa HOM05D004005 ORTHO05D004876 1.1e-17 93.2 55 80.0
Lsat_1_v5_gn_7_51181 Lactuca sativa HOM05D004005 ORTHO05D004876 1.1e-17 93.2 53 81.1
MBI14_g16417_MAGBIO Magnolia biondii HOM05D004005 ORTHO05D004876 1.1e-17 93.2 53 83.0
MSTRG.26250 Avicennia marina HOM05D004005 ORTHO05D004876 1.4e-17 92.8 53 81.1
Cpa.g.sc199.4 Carica papaya HOM05D004005 ORTHO05D004876 1.4e-17 92.8 53 81.1
Duzib150G0934 Durio zibethinus HOM05D004005 ORTHO05D004876 1.4e-17 92.8 53 81.1
Duzib187G0310 Durio zibethinus HOM05D004005 ORTHO05D004876 1.4e-17 92.8 55 78.2
ECA234G2728 Erigeron canadensis HOM05D004005 ORTHO05D004876 1.4e-17 92.8 61 75.4
Hma1.2p1_0028F.1_g017890 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 1.4e-17 92.8 53 83.0
Hma1.2p1_0325F.1_g126020 Hydrangea macrophylla HOM05D004005 ORTHO05D004876 1.4e-17 92.8 53 83.0
Nitab4.5_0002545g0030 Nicotiana tabacum HOM05D004005 ORTHO05D004876 1.4e-17 92.8 53 84.9
Rhsim03G0260700 Rhododendron simsii HOM05D004005 ORTHO05D004876 1.4e-17 92.8 53 84.9
Sabra18G0086900 Salix brachista HOM05D004005 ORTHO05D004876 1.4e-17 92.8 53 81.1
Thecc.09G157600 Theobroma cacao HOM05D004005 ORTHO05D004876 1.4e-17 92.8 53 81.1
Duzib168G0635 Durio zibethinus HOM05D004005 ORTHO05D004876 1.9e-17 92.4 53 79.2
Rhsim03G0261200 Rhododendron simsii HOM05D004005 ORTHO05D004876 1.9e-17 92.4 53 83.0
CiPaw.08G000800 Carya illinoinensis HOM05D004005 ORTHO05D004876 2.5e-17 92.0 53 81.1
Eucgr.C01238 Eucalyptus grandis HOM05D004005 ORTHO05D004876 2.5e-17 92.0 53 81.1
Gohir.A08G092600 Gossypium hirsutum HOM05D004005 ORTHO05D004876 2.5e-17 92.0 53 79.2
Gohir.D08G098200 Gossypium hirsutum HOM05D004005 ORTHO05D004876 2.5e-17 92.0 53 79.2
Gorai.004G105600 Gossypium raimondii HOM05D004005 ORTHO05D004876 2.5e-17 92.0 53 79.2
MD16G1260700 Malus domestica HOM05D004005 ORTHO05D004876 2.5e-17 92.0 52 84.6
PGR102G1327 Punica granatum HOM05D004005 ORTHO05D004876 2.5e-17 92.0 53 84.9
PGSC0003DMG400011163 Solanum tuberosum HOM05D004005 ORTHO05D004876 2.5e-17 92.0 53 83.0
CAN.G1190.5 Capsicum annuum HOM05D004005 ORTHO05D004876 3.2e-17 91.7 53 83.0
Migut.K00290 Erythranthe guttata HOM05D004005 ORTHO05D004876 3.2e-17 91.7 53 81.1
Manes.14G150200 Manihot esculenta HOM05D004005 ORTHO05D004876 3.2e-17 91.7 53 81.1
Migut.J01404 Erythranthe guttata HOM05D004005 ORTHO05D004876 4.2e-17 91.3 53 79.2
Solyc07g006160.3 Solanum lycopersicum HOM05D004005 ORTHO05D004876 4.2e-17 91.3 53 83.0
Sopen07g002270 Solanum pennellii HOM05D004005 ORTHO05D004876 4.2e-17 91.3 53 83.0
CSS0032478 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 5.5e-17 90.9 53 81.1
FAN12G2564 Fragaria x ananassa HOM05D004005 ORTHO05D004876 5.5e-17 90.9 55 78.2
FAN12G2633 Fragaria x ananassa HOM05D004005 ORTHO05D004876 5.5e-17 90.9 55 78.2
AUR62039768 Chenopodium quinoa HOM05D004005 ORTHO05D004876 7.2e-17 90.5 53 79.2
Lsat_1_v5_gn_5_88220 Lactuca sativa HOM05D004005 ORTHO05D004876 7.2e-17 90.5 61 73.8
Potri.018G100900 Populus trichocarpa HOM05D004005 ORTHO05D004876 7.2e-17 90.5 53 81.1
HPP92_000253 Vanilla planifolia HOM05D004005 ORTHO05D004876 7.2e-17 90.5 53 81.1
arahy.Tifrunner.gnm1.ann1.GLFY1J Arachis hypogaea HOM05D004005 ORTHO05D004876 9.3e-17 90.1 53 79.2
HanXRQChr03g0065981 Helianthus annuus HOM05D004005 ORTHO05D004876 9.3e-17 90.1 53 81.1
MD13G1275200 Malus domestica HOM05D004005 ORTHO05D004876 9.3e-17 90.1 52 80.8
ATR0580G234 Amborella trichopoda HOM05D004005 ORTHO05D004876 1.2e-16 89.7 53 79.2
arahy.Tifrunner.gnm1.ann1.GWW68B Arachis hypogaea HOM05D004005 ORTHO05D004876 1.2e-16 89.7 53 77.4
AUR62028391 Chenopodium quinoa HOM05D004005 ORTHO05D004876 1.2e-16 89.7 52 80.8
Medtr4g129950 Medicago truncatula HOM05D004005 ORTHO05D004876 1.2e-16 89.7 53 77.4
TPR.G24854 Trifolium pratense HOM05D004005 ORTHO05D004876 1.2e-16 89.7 53 77.4
CSS0050478 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 1.6e-16 89.4 52 82.7
Haze_21258 Corylus avellana HOM05D004005 ORTHO05D004876 1.6e-16 89.4 53 79.2
Lj4g0005184 Lotus japonicus HOM05D004005 ORTHO05D004876 1.6e-16 89.4 53 79.2
unitig_0.g2693 Utricularia gibba HOM05D004005 ORTHO05D004876 1.6e-16 89.4 51 80.4
Lalb_Chr12g0198871 Lupinus albus HOM05D004005 ORTHO05D004876 2.7e-16 88.6 53 77.4
SalBow6G1392 Salvia bowleyana HOM05D004005 ORTHO05D004876 2.7e-16 88.6 53 75.5
THA.LOC104817817 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 2.7e-16 88.6 53 81.1
VMungo1215G0146 Vigna mungo HOM05D004005 ORTHO05D004876 2.7e-16 88.6 53 75.5
EL10Ac8g18886 Beta vulgaris HOM05D004005 ORTHO05D004876 3.6e-16 88.2 53 75.5
Ca_21161_v3 Cicer arietinum L. HOM05D004005 ORTHO05D004876 3.6e-16 88.2 53 75.5
Glyma.02G207800 Glycine max HOM05D004005 ORTHO05D004876 3.6e-16 88.2 53 75.5
Glyma.17G069900 Glycine max HOM05D004005 ORTHO05D004876 3.6e-16 88.2 53 75.5
CDE04G0214 Ceratophyllum demersum HOM05D004005 ORTHO05D004876 4.6e-16 87.8 51 80.4
DCAR_020096 Daucus carota HOM05D004005 ORTHO05D004876 4.6e-16 87.8 53 77.4
A03p59900 Brassica napus HOM05D004005 ORTHO05D004876 1.0e-15 86.7 61 70.5
C07p57960 Brassica napus HOM05D004005 ORTHO05D004876 1.0e-15 86.7 61 70.5
BolC7t46254H Brassica oleracea HOM05D004005 ORTHO05D004876 1.0e-15 86.7 61 70.5
BraA03t15047Z Brassica rapa HOM05D004005 ORTHO05D004876 1.0e-15 86.7 61 70.5
Thhalv10025004m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 1.0e-15 86.7 61 70.5
QL02p094609 Quercus lobata HOM05D004005 ORTHO05D004876 1.0e-15 86.7 53 77.4
Aqoxy5G00992 Aquilegia oxysepala HOM05D004005 ORTHO05D004876 1.4e-15 86.3 53 77.4
AL7G21650 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 1.4e-15 86.3 53 75.5
AT4G30490 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 1.4e-15 86.3 53 75.5
Carub.0007s1010 Capsella rubella HOM05D004005 ORTHO05D004876 1.4e-15 86.3 53 75.5
CARHR238380 Cardamine hirsuta HOM05D004005 ORTHO05D004876 1.4e-15 86.3 53 75.5
THA.LOC104819957 Tarenaya hassleriana HOM05D004005 ORTHO05D004876 1.4e-15 86.3 53 73.6
Phvul.003G152600 Phaseolus vulgaris HOM05D004005 ORTHO05D004876 1.8e-15 85.9 53 75.5
Lalb_Chr13g0300621 Lupinus albus HOM05D004005 ORTHO05D004876 2.3e-15 85.5 53 73.6
Aa31LG2G20040 Aethionema arabicum HOM05D004005 ORTHO05D004876 3.0e-15 85.1 53 73.6
BcaNung00559 Brassica carinata HOM05D004005 ORTHO05D004876 3.9e-15 84.7 61 68.9
Pp3c22_9370 Physcomitrium patens HOM05D004005 ORTHO05D004876 3.9e-15 84.7 53 71.7
Psat0s3878g0040 Pisum sativum HOM05D004005 ORTHO05D004876 3.9e-15 84.7 53 73.6
Sp7g28370 Schrenkiella parvula HOM05D004005 ORTHO05D004876 3.9e-15 84.7 61 68.9
CSS0018523 Camellia sinensis var. sinensis HOM05D004005 ORTHO05D004876 6.7e-15 84.0 59 72.9
Carub.0007s1271 Capsella rubella HOM05D004005 ORTHO05D004876 6.7e-15 84.0 53 75.5
AL7G24540 Arabidopsis lyrata HOM05D004005 ORTHO05D004876 1.1e-14 83.2 53 73.6
AT4G28070 Arabidopsis thaliana HOM05D004005 ORTHO05D004876 1.1e-14 83.2 53 73.6
SEGI_21312 Sequoiadendron giganteum HOM05D004005 ORTHO05D004876 1.9e-14 82.4 53 71.7
Zm00001eb076820 Zea mays HOM05D004005 ORTHO05D004876 1.9e-14 82.4 53 71.7
Zm00001eb426980 Zea mays HOM05D004005 ORTHO05D004876 2.5e-14 82.0 53 71.7
Thhalv10025101m.g Eutrema salsugineum HOM05D004005 ORTHO05D004876 3.3e-14 81.6 53 73.6
BcaNung01599 Brassica carinata HOM05D004005 ORTHO05D004876 4.3e-14 81.3 53 73.6
A01p19450 Brassica napus HOM05D004005 ORTHO05D004876 4.3e-14 81.3 53 73.6
C01p24500 Brassica napus HOM05D004005 ORTHO05D004876 4.3e-14 81.3 53 73.6
BolC1t02399H Brassica oleracea HOM05D004005 ORTHO05D004876 4.3e-14 81.3 53 73.6
BraA01t01885Z Brassica rapa HOM05D004005 ORTHO05D004876 4.3e-14 81.3 53 73.6
CARHR235770 Cardamine hirsuta HOM05D004005 ORTHO05D004876 4.3e-14 81.3 53 71.7
BolC1t03256H Brassica oleracea HOM05D004005 ORTHO05D021354 1.7e-13 79.3 49 77.6
Sp7g26020 Schrenkiella parvula HOM05D004005 ORTHO05D004876 2.8e-13 78.6 53 71.7
Pp3c18_12420 Physcomitrium patens HOM05D004005 ORTHO05D004876 6.3e-13 77.4 53 66.0
SMO145G0222 Selaginella moellendorffii HOM05D004005 ORTHO05D004876 2.4e-12 75.5 53 66.0
BcaC09g50514 Brassica carinata HOM05D004005 ORTHO05D004876 5.3e-12 74.3 53 71.7
Mapoly0020s0008 Marchantia polymorpha HOM05D004005 ORTHO05D004876 6.9e-12 73.9 53 66.0
CBR_g49493 Chara braunii HOM05D004005 ORTHO05D004876 1.2e-11 73.2 58 60.3
Actinidia33309 Actinidia chinensis HOM05D004005 ORTHO05D004876 1.1e-09 66.6 52 69.2
RcHm_v2.0_Chr6g0273951 Rosa chinensis HOM05D004005 ORTHO05D004876 2.5e-09 65.5 55 61.8
AagrBONN_evm.TU.Sc2ySwM_117.2796 Anthoceros agrestis HOM05D004005 ORTHO05D004876 5.1e-07 57.8 49 57.1
FAN12G2076 Fragaria x ananassa HOM05D004005 ORTHO05D004876 6.7e-07 57.4 32 81.2
PRCOL_00006651 Prasinoderma coloniale HOM05D004005 ORTHO05D004876 8.8e-07 57.0 50 54.0
RcHm_v2.0_Chr2g0167931 Rosa chinensis HOM05D004005 ORTHO05D004876 2.0e-06 55.8 32 75.0


User provided reference genes

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