Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr04g0097131 Helianthus annuus HOM05D009775 ORTHO05D219867 1.0e-56 223.0 100 100.0
HanXRQChr16g0521301 Helianthus annuus HOM05D009775 ORTHO05D011458 3.5e-17 91.7 62 69.4
HanXRQChr10g0298761 Helianthus annuus HOM05D009775 ORTHO05D011458 7.9e-17 90.5 53 77.4
HanXRQChr16g0505551 Helianthus annuus HOM05D009775 ORTHO05D011458 1.4e-13 79.7 49 73.5
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 1.0e-08 63.5 51 60.8
HanXRQChr03g0072021 Helianthus annuus HOM05D009775 ORTHO05D221878 6.7e-08 60.8 41 68.3
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 1.9e-07 59.3 65 47.7
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 2.5e-07 58.9 65 47.7
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 3.3e-07 58.5 65 46.2
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 4.3e-07 58.2 65 46.2
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 7.4e-07 57.4 65 46.2
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 7.4e-07 57.4 65 46.2
Lsat_1_v5_gn_9_59821 Lactuca sativa HOM05D000726 ORTHO05D025737 9.6e-07 57.0 33 72.7
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 9.6e-07 57.0 65 44.6
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 9.6e-07 57.0 65 44.6
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 1.3e-06 56.6 32 75.0
HanXRQChr10g0299411 Helianthus annuus HOM05D009775 ORTHO05D011458 1.3e-06 56.6 54 50.0
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 1.3e-06 56.6 32 75.0
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 1.6e-06 56.2 32 71.9
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 1.6e-06 56.2 91 38.5
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 1.6e-06 56.2 65 49.2
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 1.6e-06 56.2 32 71.9
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 2.1e-06 55.8 65 44.6
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 2.1e-06 55.8 27 81.5
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 2.8e-06 55.5 27 81.5
HanXRQChr10g0311791 Helianthus annuus HOM05D009775 ORTHO05D011458 2.8e-06 55.5 54 50.0
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 2.8e-06 55.5 27 81.5
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 2.8e-06 55.5 27 81.5
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 2.8e-06 55.5 27 81.5
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 2.8e-06 55.5 27 81.5
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 2.8e-06 55.5 27 81.5
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 3.7e-06 55.1 41 61.0
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 3.7e-06 55.1 27 81.5
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 3.7e-06 55.1 32 68.8
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 3.7e-06 55.1 27 77.8
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 3.7e-06 55.1 32 68.8
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 3.7e-06 55.1 32 68.8
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 3.7e-06 55.1 32 68.8
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 3.7e-06 55.1 27 77.8
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 77.8
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 4.8e-06 54.7 32 68.8
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
FvH4_7g15081 Fragaria vesca HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Sed0024082 Sechium edule HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 4.8e-06 54.7 29 75.9
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 4.8e-06 54.7 27 81.5
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.8e-06 54.7 32 68.8
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 6.2e-06 54.3 27 77.8
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.2e-06 54.3 65 44.6
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 6.2e-06 54.3 32 68.8
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 6.2e-06 54.3 32 68.8
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 6.2e-06 54.3 29 75.9
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 6.2e-06 54.3 32 68.8
Atru.chr5.547 Acer truncatum HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
Aa31LG5G720 Aethionema arabicum HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 74.1
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 74.1
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 8.2e-06 53.9 27 81.5
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 8.2e-06 53.9 91 37.4


User provided reference genes

Program Settings